Diversidade e distribuição do gênero Alvania (Mollusca, Gastropoda: Rissoidae) no litoral brasileiro

Os Rissoidae Gray, 1847 são compostos por conchas pequenas ou micro-conchas, abundantes nos mares de todo mundo. Uma grande diversidade das espécies desse grupo é encontrada nas zonas de maré baixa e ao longo do litoral, onde há a maior ocorrência de algas, rochas, corais e outros locais que fornecem abrigo, todavia muitos ocorrem também em zonas de mar profundo. Em Rissoidae, Alvania é um dos mais diversos quanto ao número de espécies, sendo frequentes as descrições ou re-descrições dentro desse gênero. O objetivo desse trabalho foi determinar a diversidade e a distribuição de Alvania, para assim descrever e ampliar o conhecimento sobre a fauna no litoral brasileiro, através das análises conquiológicas, além da distribuição geográfica e batimétrica das espécies desse gênero. Todo o material é proveniente de coleções de museus, campanhas oceanográficas e também de material coletado no segundo semestre de 2010 e em 2011. Anteriormente, foram listadas 7 espécies para a costa oeste do Atlântico, sendo que no presente trabalho três dessas espécies não foram encontradas. Foram analisados 3599 indivíduos pertencentes a dez espécies: Alvania auberiana (Orbigny, 1842); Alvania cancapae Bouchet & Warén, 1993; Alvania colombiana Rommer & Moore, 1988; Alvania faberi De Jong & Coomans, 1988; Alvania tarsodes (Watson, 1886), Alvania valeriae Absalão, 1993, além de quatro possíveis novas espécies: Alvania sp. nov. 1, Alvania sp. nov. 2, Alvania sp. nov. 3, Alvania sp. nov.4.

Geologia e paleontologia do biohermito da Formação Pirabas (Mioceno Inferior)

O presente trabalho compreende o estudo geológico e paleontológico detalhado da litofácies recifal da Formação Pirabas, Estado do Pará, aflorante na Praia do Maçarico, município de Salinópolis, como um corpo pequeno, isolado e lenticular, que deve ter se desenvolvido na rampa interna da plataforma do Mar de Pirabas. O conteúdo biótico é rico e variado, composto por três grupos de algas coralíneas, poríferos, corais, briozoários, equinoides, foraminíferos, ostracodes, e moluscos. Foram reconhecidos neste recife em mancha três estágios de sucessão ecológica, estabilização, colonização e diversificação, onde as finas crostas micríticas reconhecidas na parte superior do estágio diversificação indicam degradação das condições ambientais favoráveis à acreção recifal, provavelmente devido a continentalização do sítio deposicional. O exame petrográfico revelou apenas uma microfácies deposicional, biomicrito, sem consideráveis variações texturais e composicionais. A cimentação marinha é predominante, representada por massas microcristalinas e cimentos micríticos, localmente neomorfisados para bioesparito, e detritos carbonáticos advindos do fluxo biogênico inconsolidado, resultantes principalmente da dispersão de cristais de aragonita dos fragmentos algálicos, acumulados sob a forma de lama micrítica. Para a gênese da bioconstrução as algas foram fundamentais na consolidação e modelagem do arcabouço, principalmente as macroalgas vermelhas, decisivas para a proteção e cimentação dos demais organismos.

Eventos biológicos da Formação Pirabas (Mioceno Inferior)

Este trabalho trata sobre a identificação dos eventos biológicos globais, regionais e locais da Formação Pirabas, sob a luz dos modernos conceitos de análise e evolução geobiológica de bacias sedimentares, integrando os processos geológicos crustais do Neógeno com as respostas adaptativas e filogenéticas das biotas marinhas. Foram caracterizados bioeventos globais de inovação e radiação entre os moluscos e sirênios e,bioeventos regionais de radiação e dispersão biogeográfica de biválvios, gastrópodes, crustáceos decápodes, equinóides, corais escleractíneos, briozoários, ostracodes e foraminíferos, assim como de extinção da espécie Orthaulax pugnax. Também foram reconhecidos bioeventos locais de expansão biogeográfica da flórula, de uma comunidade estenobiôntica, bem como variações ecofenotípicas nas espécies também registradas nas demais áreas da Província Biogeográfica Caribeana.

ORIGIN AND EARLY DIVERSIFICATION OF THE PHYLUM CNIDARIA VERRILL: MAJOR DEVELOPMENTS IN THE ANALYSIS OF THE TAXON'S PROTEROZOIC-CAMBRIAN HISTORY

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Zoeal stages and megalopa of Mithrax hispidus (Herbst, 1790) (Decapoda: Brachyura: Majoidea: Mithracidae): A reappraisal of larval characters from laboratory cultured material and a review of larvae of the Mithrax-Mithraculus species complex

Mithrax hispidus (Herbst, 1790) is a mithracid majoid crab occurring on sand, corals and rocks in waters of the western Atlantic. Larval development consists of two zoeal stages and a megalopa. All larval stages are described in detail based on multiple cultures. Prior to this study, larvae of M hispidus were considered to be different and grouped separately from most other larvae of Mithrax, primarily based on setation. A detailed morphological examination, based on the same specimens used for the first description, revealed that the inclusion of M hispidus in a separate group is not valid as zoeae now fully agree with the morphological characteristics defined for the other group of five Mithrax species, including M. pleuracanthus, M. verrucosus, M. caribbaeus, M. coryphe, and M. forceps. This illustrates the importance of precisely recording morphological details such as setation, which may otherwise lead to incorrect interpretations with regard to perceived taxonomic affinities. A comparison of larvae of the Mithrax -Mithraculus species complex does not support separation into two genera. Larval evidence supports the recently suggested adult-based synonymization of M caribbaeus with M. hispidus.

Emerging Marine Diseases: Climate Links and Anthropogenic Factors

Mass mortalities due to disease outbreaks have recently affected major taxa in the oceans. For closely monitored groups like corals and marine mammals, reports of the frequency of epidemics and the number of new diseases have increased recently. A dramatic global increase in the severity of coral bleaching in 1997-98 is coincident with high El Niño temperatures. Such climate-mediated, physiological stresses may compromise host resistance and increase frequency of opportunistic diseases. Where documented, new diseases typically have emerged through host or range shifts of known pathogens. Both climate and human activities may have also accelerated global transport of species, bringing together pathogens and previously unexposed host populations.

The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis

Dactylotrochus cervicornis (= Tridacophyllia cervicornis Moseley, 1881), which occurs in Indo-Pacific waters between 73 and 852 m, was originally described as an astraeid but was later transferred to the Caryophylliidae. Assumed to be solitary, this species has no stolons and only one elongated fossa, and is unique among azooxanthellate scleractinians in often displaying extremely long thecal extensions that are septate and digitiform. Based on both molecular phylogenetic analyses (partial mitochondrial CO1 and 16S rDNA, and partial nuclear 28S rDNA) and morphological characteristics, we propose the transfer of D. cervicornis from the Caryophylliidae to the Agariciidae, making it the first extant representative of the latter family that is solitary and from deep water (azooxanthellate). The basal position of D. cervicornis within the agariciids implied by our analyses strengthens the case for inclusion of fossil species that were solitary, such as Trochoseris, in this family and suggests that the ancestor of this scleractinian family, extant members of which are predominantly colonial and zooxanthellate, may have been solitary and azooxanthellate.

An illustrated key to the genera and subgenera of the Recent azooxanthellate Scleractinia (Cnidaria, Anthozoa), with an attached glossary

The 120 presently recognized genera and seven subgenera of the azooxanthellate Scleractinia are keyed using gross morphological characters of the corallum. All genera are illustrated with calicular and side views of coralla. All termes used in the key are defined in an illustrated glossary. A table of all species-level keys, both comprehensive and faunistic, is provided covering the last 40 years.

Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis

The endemic marine sponge Arenosclera brasiliensis (Porifera, Demospongiae, Haplosclerida) is a known source of secondary metabolites such as arenosclerins A-C. In the present study, we established the composition of the A. brasiliensis microbiome and the metabolic pathways associated with this community. We used 454 shotgun pyrosequencing to generate approximately 640,000 high-quality sponge-derived sequences (similar to 150 Mb). Clustering analysis including sponge, seawater and twenty-three other metagenomes derived from marine animal microbiomes shows that A. brasiliensis contains a specific microbiome. Fourteen bacterial phyla (including Proteobacteria, Cyanobacteria, Actinobacteria, Bacteroidetes, Firmicutes and Cloroflexi) were consistently found in the A. brasiliensis metagenomes. The A. brasiliensis microbiome is enriched for Betaproteobacteria (e.g., Burkholderia) and Gammaproteobacteria (e.g., Pseudomonas and Alteromonas) compared with the surrounding planktonic microbial communities. Functional analysis based on Rapid Annotation using Subsystem Technology (RAST) indicated that the A. brasiliensis microbiome is enriched for sequences associated with membrane transport and one-carbon metabolism. In addition, there was an overrepresentation of sequences associated with aerobic and anaerobic metabolism as well as the synthesis and degradation of secondary metabolites. This study represents the first analysis of sponge-associated microbial communities via shotgun pyrosequencing, a strategy commonly applied in similar analyses in other marine invertebrate hosts, such as corals and algae. We demonstrate that A. brasiliensis has a unique microbiome that is distinct from that of the surrounding planktonic microbes and from other marine organisms, indicating a species-specific microbiome.

Human Abuses of Coral Reefs- Adaptive Responses and Regime Transitions

During the last few decades, coral reefs have become a disappearing feature of tropical marine environments, and those reefs that do remain are severely threatened. It is understood that humans have greately altered the environment under which these ecosystems previously have thrived and evoloved. Overharvesting of fish stocks, global warming and pollution are some of the most prominent threats, acting on coral reefs at several spatial and temporal scales. Presently, it is common that coral reefs have been degraded into alternative ecosystem regimes, such as macroalgae-dominated or sea urchin-barren. Although these ecosystems could potentially return to coral dominance in a long-term perspective, when considdering current conditions, it seems likely that they will persist in their degraded states. Thus, recovery of coral reefs cannot be taken for granted on a human timescale. Multiple stressors and disturbances, which are increasingly characteristic of coral reef environments today, are believed to act synergistically and produce ecological surprises. However, current knowledge of effects of compounded disturbances and stress is limited. Based on five papers, this thesis investigates the sublethal response of multiple stressors on coral physiology, as well as the effects of compounded stress and disturbance on coral reef structure and function. Adaptive responses to stress and disturbance in relation to prior experience are highlighted. The thesis further explores how inherent characteristics (traits) of corals and macroalgae may influence regime expression when faced with altered disturbance regimes, in particular overfishing, eutrophication, elevated temperature, and enhanced substrate availability. Finally, possibilities of affecting the resilience of macroalgae-dominaed reefs and shifting the community composition towards a coral-dominated regime are explored.

Climatic and stratigraphic paleoindicators from the Canary Island

[EN] The last 5 Myr  are characterized by cliamatic variations globally and are reflected in ancient fossiliferous marine deposits visible in the Canary Islands. The fossils contained are identificated as paleoecological and paleoclimatic indicators. The Mio-Pliocene Transit is represented by the coral Siderastrea micoenica Osasco, 1897; the gastropods Rothpletzia rudista Simonelli, 1890; Ancilla glandiformis (Lamarck, 1822); Strombus coronatus Defrance, 1827 and Nerita emiliana Mayer, 1872 and the bivalve Gryphaea virleti Deshayes, 1832 as most characteristic fossils  and typical of a very warm climate and littoral zone. Associated  lava flows  have been dated radiometrically  and provides a range between  8.9 and about 4.2 Kyr. In the mid-Pleistocene, about 400,000 years ago, the called Marine Isotope Stage 11, a strong global warming that caused a sea level rise happens. Remains of the MIS 11  are preserved on the coast of Arucas (Gran Canaria), and associated with a tsunami in Piedra Alta (Lanzarote). These fossilifeorus  deposits contains the bivalve Saccostrea cucullata (Born, 1780), the gastropod Purpurellus gambiensis (Reeve, 1845) and the corals Madracis pharensis (Heller, 1868) and Dendrophyllia cornigera (Lamarck, 1816). Both sites have been dated by K-Ar on pillow lavas (approximately 420,000 years) and by Uranium Series on corals (about 481,000 years) respectively. The upper Pleistocene starts with another strong global warming known as the last interglacial or marine isotope  stage (MIS) 5.5, about 125,000 years ago, which also left marine  fossil deposits exposed in parallel to current in Igueste of San Andrés (Tenerife),  El Altillo, the  city of Las Palmas de Gran Canaria  and Maspalomas (Gran Canaria),  Matas Blancas, the Playitas and Morrojable (Fuerteventura ) and in Playa Blanca and Punta Penedo (Lanzarote ). The fossil coral Siderastrea radians (Pallas , 1766 ) currently living in the Cape Verde Islands , the Gulf of Guinea and the Caribbean has allowed Uranium series dating. The gastropods Strombus bubonius Lamarck, 1822 and Harpa doris (Röding , 1798 ) currently living in the Gulf of Guinea. Current biogeography using synoptic data obtained through satellites provided by the ISS Canary Seas provides data of Ocean Surface Temperature (SST) and Chlorophyll a (Chlor a) . This has allowed the estimation of these sea conditions during interglacials compared to today .

Variazione della capacità riproduttiva del corallo Leptopsammia pruvoti (Scleractinia, Dendrophylliidae) lungo un gradiente latitudinale di temperatura

La temperatura influenza molti dei processi fisiologici degli organismi marini e, considerato che la riproduzione dei coralli sembrerebbe essere sensibile agli stress, è necessario comprendere come questa possa reagire ai cambiamenti climatici globali per riuscire a prevedere le future risposte delle popolazioni. Leptopsammia pruvoti (Scleractinia, Dendrophylliidae) è un corallo solitario non zooxantellato presente in Mediterraneo e lungo le coste Atlantiche dal Portogallo alla Gran Bretagna meridionale, dalla superficie fino a 70 metri di profondità.. È un organismo gonocorico con fecondazione interna. In questo lavoro di tesi sono stati analizzati gli aspetti della gametogenesi di L. pruvoti a diverse latitudini per ottenere risultati preliminari riguardanti le possibili correlazioni tra attività riproduttiva e parametri ambientali (temperatura e irradianza). Tale studio si colloca all’interno del progetto europeo sul riscaldamento globale e biologia dei coralli FP7–IDEAS-ERC “Corals and Global Warming: The Mediterranean versus the Red Sea” (CoralWarm). I risultati presentati in questo lavoro sono relativi a cinque popolazioni di L. pruvoti (Genova, Calafuria, Palinuro, Scilla e Pantelleria) disposte lungo un gradiente latitudinale di temperatura e irradianza nel versante occidentale della penisola italiana. I campioni sono stati raccolti mediante campionamenti mensili effettuati tramite immersioni subacquee. Su ogni campione sono state effettuate misurazioni biometriche e analisi cito-istometriche. Nelle popolazioni analizzate i parametri riproduttivi (fecondità, abbondanza, indice gonadico, dimensione) sono stati messi in relazione con la temperatura di fondo (DT, °C) e l’irradianza solare (W/m2) peculiari di ogni sito. L. pruvoti ha mostrato una sessualità gonocorica in tutti i siti considerati. In tutte le popolazioni, la presenza di due stock di ovociti e la distribuzione degli stadi di maturazione degli spermiari durante le fasi di attività riproduttiva, nell’arco dell’anno, hanno permesso di definire un periodo di reclutamento e uno di maturità gonadica, suggerendo che tali eventi siano influenzati dai cambiamenti stagionali della temperatura dell’acqua e del fotoperiodo. Nel periodo di reclutamento, la fecondità presentava una debole correlazione positiva con i parametri ambientali considerati. Al momento della maturità gonadica gli ovociti erano di dimensioni maggiori e meno numerosi rispetto al periodo precedente, nelle popolazioni con una maggiore temperatura e irradianza. Una possibile interpretazione potrebbe essere l’esistenza di un processo di fusione degli ovociti nel periodo di maturità gonadica che sembrerebbe più marcato nelle popolazioni più calde e maggiormente irradiate. La spermatogenesi, diversamente, non ha delineato finora un pattern chiaramente interpretabile. Con i dati attualmente in nostro possesso, non possiamo tuttavia escludere che le differenze riscontrate nelle dimensioni di ovociti e spermiari lungo il gradiente latitudinale considerato siano dovute a un lieve sfasamento nel raggiungimento della maturità gonadica, pur mantenendo la medesima stagionalità nel ciclo riproduttivo delle diverse popolazioni. Ulteriori studi saranno necessari per poter meglio comprendere i complessi meccanismi che regolano e controllano i processi riproduttivi al variare dei parametri ambientali. In questo modo sarà possibile considerare i risulti ottenuti nel contesto dei cambiamenti climatici globali.

Sedimentary environments and climate change: a case study (late Miocene, central Crete)

In this study, conditions of deposition and stratigraphical architecture of Neogene (Tortonian, 11-6,7Ma) sediments of southern central Crete were analysed. In order to improve resolution of paleoclimatic data, new methods were applied to quantify environmental parameters and to increase the chronostratigraphic resolution in shallow water sediments. A relationship between paleoenvironmental change observed on Crete and global processes was established and a depositional model was developed. Based on a detailed analysis of the distribution of non geniculate coralline red algae, index values for water temperature and water depth were established and tested with the distribution patterns of benthic foraminifera and symbiont-bearing corals. Calcite shelled bivalves were sampled from the Algarve coast (southern Portugal) and central Crete and then 87Sr/86Sr was measured. A high resolution chronostratigraphy was developed based on the correlation between fluctuations in Sr ratios in the measured sections and in a late Miocene global seawater Sr isotope reference curve. Applying this method, a time frame was established to compare paleoenvironmental data from southern central Crete with global information on climate change reflected in oxygen isotope data. The comparison between paleotemperature data based on red algae and global oxygen isotope data showed that the employed index values reflect global change in temperature. Data indicate a warm interval during earliest Tortonian, a second short warm interval between 10 and 9,5Ma, a longer climatic optimum between 9 and 8Ma and an interval of increasing temperatures in the latest Tortonian. The distribution of coral reefs and carpets shows that during the warm intervals, the depositional environment became tropical while temperate climates prevailed during the cold interval. Since relative tectonic movements after initial half-graben formation in the early Tortonian were low in southern central Crete, sedimentary successions strongly respond to global sea-level fluctuation. A characteristic sedimentary succession formed during a 3rd order sea-level cycle: It comprises mixed siliciclastic-limestone deposited during sea-level fall and lowstand, homogenous red algal deposits formed during sea-level rise and coral carpets formed during late rise and highstand. Individual beds in the succession reflect glacioeustatic fluctuations that are most prominent in the mixed siliciclastic-limestone interval. These results confirm the fact that sedimentary successions deposited at the critical threshold between temperate and tropical environments develop characteristic changes in depositional systems and biotic associations that can be used to assemble paleoclimatic datasets.

Parameter estimation in a growth model for a biological population

The motivating problem concerns the estimation of the growth curve of solitary corals that follow the nonlinear Von Bertalanffy Growth Function (VBGF). The most common parameterization of the VBGF for corals is based on two parameters: the ultimate length L∞ and the growth rate k. One aim was to find a more reliable method for estimating these parameters, which can capture the influence of environmental covariates. The main issue with current methods is that they force the linearization of VBGF and neglect intra-individual variability. The idea was to use the hierarchical nonlinear model which has the appealing features of taking into account the influence of collection sites, possible intra-site measurement correlation and variance heterogeneity, and that can handle the influence of environmental factors and all the reliable information that might influence coral growth. This method was used on two databases of different solitary corals i.e. Balanophyllia europaea and Leptopsammia pruvoti, collected in six different sites in different environmental conditions, which introduced a decisive improvement in the results. Nevertheless, the theory of the energy balance in growth ascertains the linear correlation of the two parameters and the independence of the ultimate length L∞ from the influence of environmental covariates, so a further aim of the thesis was to propose a new parameterization based on the ultimate length and parameter c which explicitly describes the part of growth ascribable to site-specific conditions such as environmental factors. We explored the possibility of estimating these parameters characterizing the VBGF new parameterization via the nonlinear hierarchical model. Again there was a general improvement with respect to traditional methods. The results of the two parameterizations were similar, although a very slight improvement was observed in the new one. This is, nevertheless, more suitable from a theoretical point of view when considering environmental covariates.

Mediterranean-type climate in the South Aegean (Eastern Mediterranean) during the Late Miocene: Evidence from isotope and element proxies

The present-day climate in the Mediterranean region is characterized by mild, wet winters and hot, dry summers. There is contradictory evidence as to whether the present-day conditions (“Mediterranean climate”) already existed in the Late Miocene. This thesis presents seasonally-resolved isotope and element proxy data obtained from Late Miocene reef corals from Crete (Southern Aegean, Eastern Mediterranean) in order to illustrate climate conditions in the Mediterranean region during this time. There was a transition from greenhouse to icehouse conditions without a Greenland ice sheet during the Late Miocene. Since the Greenland ice sheet is predicted to melt fully within the next millennia, Late Miocene climate mechanisms can be considered as useful analogues in evaluating models of Northern Hemispheric climate conditions in the future. So far, high resolution chemical proxy data on Late Miocene environments are limited. In order to enlarge the proxy database for this time span, coral genus Tarbellastraea was evaluated as a new proxy archive, and proved reliable based on consistent oxygen isotope records of Tarbellastraea and the established paleoenvironmental archive of coral genus Porites. In combination with lithostratigraphic data, global 87Sr/86Sr seawater chronostratigraphy was used to constrain the numerical age of the coral sites, assuming the Mediterranean Sea to be equilibrated with global open ocean water. 87Sr/86Sr ratios of Tarbellastraea and Porites from eight stratigraphically different sampling sites were measured by thermal ionization mass spectrometry. The ratios range from 0.708900 to 0.708958 corresponding to ages of 10 to 7 Ma (Tortonian to Early Messinian). Spectral analyses of multi-decadal time-series yield interannual δ18O variability with periods of ~2 and ~5 years, similar to that of modern records, indicating that pressure field systems comparable to those controlling the seasonality of present-day Mediterranean climate existed, at least intermittently, already during the Late Miocene. In addition to sea surface temperature (SST), δ18O composition of coral aragonite is controlled by other parameters such as local seawater composition which as a result of precipitation and evaporation, influences sea surface salinity (SSS). The Sr/Ca ratio is considered to be independent of salinity, and was used, therefore, as an additional proxy to estimate seasonality in SST. Major and trace element concentrations in coral aragonite determined by laser ablation inductively coupled plasma mass spectrometry yield significant variations along a transect perpendicular to coral growth increments, and record varying environmental conditions. The comparison between the average SST seasonality of 7°C and 9°C, derived from average annual δ18O (1.1‰) and Sr/Ca (0.579 mmol/mol) amplitudes, respectively, indicates that the δ18O-derived SST seasonality is biased by seawater composition, reducing the δ18O amplitude by 0.3‰. This value is equivalent to a seasonal SSS variation of 1‰, as observed under present-day Aegean Sea conditions. Concentration patterns of non-lattice bound major and trace elements, related to trapped particles within the coral skeleton, reflect seasonal input of suspended load into the reef environment. δ18O, Sr/Ca and non-lattice bound element proxy records, as well as geochemical compositions of the trapped particles, provide evidence for intense precipitation in the Eastern Mediterranean during winters. Winter rain caused freshwater discharge and transport of weathering products from the hinterland into the reef environment. There is a trend in coral δ18O data to more positive mean δ18O values (–2.7‰ to –1.7‰) coupled with decreased seasonal δ18O amplitudes (1.1‰ to 0.7‰) from 10 to 7 Ma. This relationship is most easily explained in terms of more positive summer δ18O. Since coral diversity and annual growth rates indicate more or less constant average SST for the Mediterranean from the Tortonian to the Early Messinian, more positive mean and summer δ18O indicate increasing aridity during the Late Miocene, and more pronounced during summers. The analytical results implicate that winter rainfall and summer drought, the main characteristics of the present-day Mediterranean climate, were already present in the Mediterranean region during the Late Miocene. Some models have argued that the Mediterranean climate did not exist in this region prior to the Pliocene. However, the data presented here show that conditions comparable to those of the present-day existed either intermittently or permanently since at least about 10 Ma.