Molecular Dissection of Mycobacterium tuberculosis Integration Host Factor Reveals Novel Insights into the Mode of DNA Binding and Nucleoid Compaction

Background: mIHF belongs to a subfamily of proteins, distinct from E. coli IHF. Results: Functionally important amino acids of mIHF and the mechanism(s) underlying DNA binding, DNA bending, and site-specific recombination are distinct from that of E. coli IHF. Conclusion: mIHF functions could contribute beyond nucleoid compaction. Significance: Because mIHF is essential for growth, the molecular mechanisms identified here can be exploited in drug screening efforts. The annotated whole-genome sequence of Mycobacterium tuberculosis revealed that Rv1388 (Mtihf) is likely to encode for a putative 20-kDa integration host factor (mIHF). However, very little is known about the functional properties of mIHF or the organization of the mycobacterial nucleoid. Molecular modeling of the mIHF three-dimensional structure, based on the cocrystal structure of Streptomyces coelicolor IHF duplex DNA, a bona fide relative of mIHF, revealed the presence of Arg-170, Arg-171, and Arg-173, which might be involved in DNA binding, and a conserved proline (Pro-150) in the tight turn. The phenotypic sensitivity of Escherichia coli ihfA and ihfB strains to UV and methyl methanesulfonate could be complemented with the wild-type Mtihf but not its alleles bearing mutations in the DNA-binding residues. Protein-DNA interaction assays revealed that wild-type mIHF, but not its DNA-binding variants, binds with high affinity to fragments containing attB and attP sites and curved DNA. Strikingly, the functionally important amino acid residues of mIHF and the mechanism(s) underlying its binding to DNA, DNA bending, and site-specific recombination are fundamentally different from that of E. coli IHF. Furthermore, we reveal novel insights into IHF-mediated DNA compaction depending on the placement of its preferred binding sites; mIHF promotes DNA compaction into nucleoid-like or higher order filamentous structures. We therefore propose that mIHF is a distinct member of a subfamily of proteins that serve as essential cofactors in site-specific recombination and nucleoid organization and that these findings represent a significant advance in our understanding of the role(s) of nucleoid-associated proteins.

Role of interface curvature on stress distribution under indentation for ZrN/Zr multilayer coating

Contact damage in curved interface nano-layeredmetal/nitride (150 (ZrN)/10 (Zr) nm) multilayer is investigated in order to understand the role of interface morphology on contact damage under indentation. A finite element method (FEM) model was formulated with different wavelengths of 1000 nm, 500 nm, 250 nm and common height of 50 nm, which gives insight on the effect of different curvature on stress field generated under indentation. Elastic-plastic properties were assigned to the metal layer and substrate while the nitride layer was assigned perfectly elastic properties. Curved interface multilayers show delamination along the metal/nitride interface and vertical cracks emanating from the ends of the delamination. FEM revealed the presence of tensile stress normal to the interface even under the contact, along with tensile radial stresses, both present at the valley part of the curve, which leads to vertical cracks associated with interfacial delamination. Stress enhancement was seen to be relatively insensitive to curvature. (C) 2014 Elsevier B.V. All rights reserved.

Lipase mediated enzymatic degradation of polydioxanone in solution

The enzymatic biodegradation of polydioxanone (PDO) in trifluoroethanol (TFE) at various temperatures (25-55 degrees C) was studied with two different types of lipases, namely immobilized enzyme Novozym 435 and free enzyme porcine pancreas lipase. The biodegradation process was monitored by gel permeation chromatography (GPC). Both enzymes showed the optimum activity at 37 degrees C and Novozym 435 exhibited better thermal stability over the experimental temperature range. A continuous distribution kinetic model was employed to describe the biodegradation process and the model was used to fit the experimental data satisfactorily and obtain kinetic parameters. (C) 2014 Elsevier Ltd. All rights reserved.

Studies on the effects of varying secondary gas properties in a low entrainment ratio supersonic ejector

A dilution cum purge ejector for application in fuel cells represents a domain of ejector operation involving low entrainment ratio with differing secondary and primary gas; which is hardly investigated and a cohesive design framework is not readily available. We comprehensively study a constant area ejector using analytical, experimental and numerical tools at low entrainment ratio (0.004-0.065) with Air, Helium and Argon as secondary gas while the primary gas is Air. For the first time, limits of operating parameters used in control volume method to design the ejector are found to be highly dependent on the secondary molecular weight. The entrainment ratio in the ejector (low for Helium and high for Argon) is affected by the molecular weight and the static pressure within the ejector (low for Air and high for Argon & Helium) by the gamma of the secondary gas. Sufficient suction pressure (0.3-0.55 bar) is generated by the ejector thereby preventing any backflow of secondary gas at all primary stagnation pressures (1.5, 2.2 and 3.1 bar). Numerical results agree well with experimental results. The ejector is shown to completely dilute and purge the secondary flow, meeting all key design requirements. (C) 2014 Elsevier Ltd. All rights reserved.

Males and females of the social wasp Ropalidia marginata do not differ in their cuticular hydrocarbon profiles and do not seem to use any long-distance volatile mate attraction cues

Sex pheromones are vital in communication between individuals belonging to opposite sexes and form an integral part of the reproductive biology of various species. Among insects, sexual dimorphism in CHCs has been reported from diverse taxa spanning seven different orders, and thereby CHCs have been implicated as sex pheromones. Because males and females of the primitively eusocial wasp Ropalidia marginata touch each other with their antennae during mating, before engaging in sperm transfer, a sex pheromone that is perceived via contact chemosensation through the antennae can possibly exist in this species. Since CHCs have been implied as sex pheromones in various insects (including hymenopterans), and since sexual dimorphism of CHCs should be an obligatory prerequisite for them to act as sex pheromones, we investigated whether males and females of R. marginata differ in their CHC profiles. We found only nonvolatile CHCs, and our results show absence of sexual dimorphism in CHCs, suggesting that CHCs do not function as sex pheromone in this species. A behavioral assay failed to show presence of mate attraction at a distance, thereby showing the absence of volatile long-distance mate attraction cues (that may originate from sources other than and in addition to CHCs).

Differential viability response of prokaryotes and eukaryotes to high strength pulsed magnetic stimuli

The present study examines the efficacy of a high strength pulsed magnetic field (PMF) towards bacterial inactivation in vitro, without compromising eukaryotic cell viability. The differential response of prokaryotes Staphylococcus aureus (MESA), Staphylococcus epidermidis, and Escherichia coli], and eukaryotes C2C12 mouse myoblasts and human mesenchymal stem cells, hMSCs] upon exposure to varying PMF stimuli (1-4 T, 30 pulses, 40 ms pulse duration) is investigated. Among the prokaryotes, similar to 60% and similar to 70% reduction was recorded in the survival of staphylococcal species and E. coli, respectively at 4 T PMF as evaluated by colony forming unit (CPU) analysis and flow cytometry. A 2-5 fold increase in intracellular ROS (reactive oxygen species) levels suggests oxidative stress as the key mediator in PMF induced bacterial death/injury. The 4 T PMF treated staphylococci also exhibited longer doubling times. Both TEM and fluorescence microscopy revealed compromised membranes of PMF exposed bacteria. Under similar PMF exposure conditions, no immediate cytotoxicity was recorded in C2C12 mouse myoblasts and hMSCs, which can be attributed to the robust resistance towards oxidative stress. The ion interference of iron containing bacterial proteins is invoked to analytically explain the PMF induced ROS accumulation in prokaryotes. Overall, this study establishes the potential of PMF as a bactericidal method without affecting eukaryotic viability. This non-invasive stimulation protocol coupled with antimicrobial agents can be integrated as a potential methodology for the localized treatment of prosthetic infections. (C) 2015 Elsevier B.V. All rights reserved.

Sonic hedgehog-responsive lipoxygenases and cyclooxygenase-2 modulate Dectin-1-induced inflammatory cytokines

Immune responses during fungal infections are predominately mediated by 5/15-lipoxygenases (LO)-or cyclooxygenase (COX)-2-catalysed bioactive eicosanoid metabolites like leukotrienes, lipoxins and prostaglandins. Although few host mediators of fungi-triggered eicosanoid production have been established, the molecular mechanism of expression and regulation of 5-LO, 15-LO and COX-2 are not well-defined. Here, we demonstrate that, macrophages infected with representative fungi Candida albicans, Aspergillus flavus or Aspergillus fumigatus or those treated with Curdlan, a selective agonist of pattern recognition receptor for fungi Dectin-1, displays increased expression of 5-LO, 15-LO and COX-2. Interestingly, Dectin-1-responsive Syk pathway activates mTOR-sonic hedgehog (SHH) signaling cascade to stimulate the expression of these lipid metabolizing enzymes. Loss-of-function analysis of the identified intermediaries indicates that while Syk-mTOR-SHH pathway-induced 5-LO and 15-LO suppressed the Dectin-l-responsive pro-inflammatory signature cytokines like TNE-alpha, IL-1 beta and IL-12, Syk-mTOR-SHH-induced COX-2 positively regulated these cytokines. Dectin-1-stimulated IL-6, however, is dependent on 5-LO, 15-LO and COX-2 activity. Together, the current study establishes Dectin-1-arbitrated host mediators that direct the differential regulation of immune responses during fungal infections and thus are potential candidates of therapeutic intervention. (C) 2015 Elsevier Ltd. All rights reserved.

Effect of current density on the microstructure and corrosion properties of plasma electrolytic oxidation (PEO) coatings on AM50 Mg alloy produced in an electrolyte containing clay additives

Plasma electrolytic oxidation coatings were produced on AM50 Mg alloy in alkaline phosphate based electrolyte with montmorillonite clay additives employing current densities of 30, 60, and 120 mA/cm(2). The effect of current density on the microstructure and corrosion properties of the coating was investigated. The clay additives got melted and reactively incorporated into the coating forming an amorphous phase, at all the current densities. However, the coating was predominantly amorphous only at 30 mA/cm(2) and with increasing current density, increasing fractions of crystalline phases were formed. Higher current densities resulted in increased thickness of the coating, but reduced the compactness of the coatings. Electrochemical impedance spectroscopy tests in 0.5 wt.% (0.08 M) and 3.5 wt.% (0.6 M) NaCl solution revealed that the coatings processed at 30 mA/cm(2) exhibited a relatively better initial corrosion resistance owing to its relatively defect-free barrier layer and compactness of the coating. However, the presence of amorphous phases in significant amounts and lack of MgO in the coating resulted in increased rate of dissolution of the coatings and degradation of corrosion resistance. Coatings produced at higher current densities exhibited initial inferior corrosion resistance due to a more defective barrier layer and increased porosity in pore band and outer porous layer. However, the increased amount of crystalline phases and an increased amount of MgO, which resisted dissolution, counterbalanced the negative effects of defective barrier and increased porosity resulting in a relatively lower rate of the degradation of the corrosion resistance. Thus, the corrosion resistance of all the coatings continuously decreased with time and became similar after prolonged immersion in NaCl solution. Increasing current density, therefore, did not prove to be beneficial for the improvement of the corrosion performance of the PEO coatings. (C) 2016 Elsevier B.V. All rights reserved.

Determinación de la incidencia de parásitos internos en los bovinos del Complejo uno y dos de la Empresa Genética Agenor Gómez, Boaco, Nicaragua

El presente trabajo se realizó en el periodo comprendido entre Noviembre y Diciembre de 1989, con el objetivo de investigar la infestación de parásitos gastrointestinales y pulmonares de mayor importancia económica en los bovinos del complejo 1 y 2 de la empresa genética Agenor Gómez. Boaco, Nicaragua. Se muestrearon 242 animales, entre bovinos de la raza Aberdeen Angus y Brahman, distribuidos en las categorías siguientes: C1 (0-1 año), C2 (1-3 años) y C3 (>3 años). Las muestras fueron extraídas directamente del recto animal, luego refrigeradas a 5°C y fueron analizadas en laboratorio de parasitología del MIDINRA, localizado en municipio de Camoapa V región. La cantidad de huevos y larvas se registró para cada género empleando las técnicas de sedimentación en agua, flotación con solución salina saturada y el método de larvoscopia e identificación con fotografías. Al realizar el ANDEVA por género de parásitos reportados en el análisis coprológico para la variable N° de huevos y larvas/gr de heces, se encontró que existen diferencias significativas con P>0.05 entre los promedios observados de los diferentes hatos. Los niveles de infestación promedio en los distintos hatos oscilaron entre 0u y 2lu; donde u= número de huevos y larvas/gramos de heces. De estos 48 promedios (8 hatos por 6 géneros de parásitos), 6 alcanzaron valores >9; 1 hato C1 de la upe Las Brisas con media de 2lu del género Haemonchus, 1 hato e de la upe San Miguel con media de 20.87u del género Strongyloides, 1 hato C2 de la upe San Jorge con media de 17.69u del género Strongyloides, 2 hatos C1 de las upe las Brisas y San Miguel con medias de 10.67u y medias de 10.5u respectivamente, ambos del género Coccidia y 1 hato e2 de la upe San Jorge con media de 9.6lu del género Coccidia. En los promedios restantes se obtuvieron valores <6u perteneciendo a la calificación leve. Posteriormente se realizó un análisis de correlación para determinar el grado de asociación existente entre cada uno de los géneros de parásitos económicamente importantes, encontrándose que el género Coccidia presentó el mayor grado de correlación con respecto a los demás géneros encontrados, se encontró que las correlaciones >= 0.25 corresponden a los géneros Coccidia, Moniezia, Neoascaris, Strongyloides y Haemonchus con r de 0.25, 0.25, 0.48, 0.30 respectivamente, similar para Haemonchus y Moniezia con r de 0.289.

Peligro aviario: Caracterización de la vegetación y determinación de las especies que son atractivas para la fauna silvestre en las areas verdes del Aeropuerto Internacional Augusto C. Sandino, Managua, Nicaragua

Se evaluó la diversidad, estructura y fenología de la flora en las áreas verdes del Aeropuerto Internacional Augusto C. Sandino con el fin de determinar las especies que son atractivas para fauna silvestre de peligro para la aviación, sea por que les provee de alimento o de refugio y hábitat. Y por otro lado, brindar recomendaciones sobre especies con potencial para formar parte de las áreas verdes del aeropuerto. Para ello, se establecieron parcelas anidadas de 2 x 2 m, 5 x 5 m y 10 x 10 m en las cuales se tomaron los datos en los estratos herbáceos, arbustivos y arbóreos respectivamente. Las parcelas se establecieron aleatoriamente en tres sitios dentro del aeropuerto: en el bosque seco al oeste del aeropuerto (BSO), en la Fuerza Aérea (FA) y en el área verde alrededor de la pista de aterrizaje (AVP). Dentro de las parcelas se contaron 117 árboles en todos los sitios, los cuales estaban agrupados en 11 especies, 10 géneros, 8 familias y 4 órdenes. Las especies arbóreas de mayor densidad fueron: Calycophyllum candidissimum(450 individuos/ ha), Albizia niopides (344), Azadirachta indica (289) y Senna siamea (261) y el sitio que presento mayor diversidad y densidad de árboles fue FA. Fueron contados 36 individuos de arbustos, pertenecientes a las especiesCapsicum annum (1) yLantana camara (35). En cuanto a especies herbáceas se contaron 11,845 individuos dentro de las unidades de muestreo, agrupados en 28 especies, 23 géneros, 14 familias y 13 órdenes, siendo el AVP el sitio que registró mayor diversidad y densidad de las mismas. Las especies herbáceas con mayores densidades fueron Cenchrus brownii (256,282.05 individuos/ha), Cynodon dactylon (141,538.46), Digitaria decumbens(106,794.87), Bothriochloa pertusa(51,282.05), Elytaria imbricada (38,846.15) y Panicum maximum (30,192.31). De las 41 especies vegetales, se determinó la fenología completa para 3�, de estas, 6 (�9.35%) florecen y fructifican todo el año:Cordia dentata, Boerhavia erecta, Chamaesyce hyssopifolia, Eleucine indica, Melanthera nivea y Rhynchosia minima. Entre las especies arbóreas mayormente atractivas para la fauna silvestre se determinaron: Albizia niopoides, Manguifera indica, Spondias mombin, Cordia dentata, Guazuma ulmifoliay Calycophyllum candidissimum al ser considerados proveedores de alimentos y refugio a la fauna silvestre, por sus frutos, flores con abundante néctar, copas con poca obstrucción visual (alta densidad de hojas) y ramificaciones horizontales propias para el perchaje de las aves de alto tamaño. Dentro de la vegetación herbáceas se determinaron especies como Tridax procumbensy Tribulus terrestis formando densos tapetes de vegetación con flores atractivas para insectos en el período seco, los cuales a la vez eran focos de atracción para aves insectívoras como: Hirundus rustica (Golondrinas), Quiscalus mexicanus (Zanate), Molotrus aeneus (Tordos), Egretta thula (Garza blanca) que permanecen en las áreas verdes alrededor de la pista de aterrizaje y que peligran colisionar con los aviones. Por otra parte, las especies de la familia Poaceae fueron registradas como proveedoras de granos a las aves del grupo de las Columbidae (Palomas). Especies de gramíneas de gran porte como Panicum maximum, P. antidotale, Sorgum halapensis, además de poseer semillas grandes (>0.3 cm), formaban corredores por donde se desplazan mamífero medianos, reptiles y aves. Dentro del mismo áreas se determinaron dos especies (B. pertusay C. dactylon) que por su baja estatura (menos de 0.3 m), reproducción vegetativa y semillas muy pequeña o ausentes, son ideales para establecer en los alrededores de la pista de aterrizaje. Mediante un ensayo se evaluó su establecimiento, el cual resulto satisfactorio al competir y ganar espacio ante otras monocotiledones y dicotiledonesas, principalmente C. dactylon

Examination of the LBM in simulation of microchannel flow in transitional regime

The gas flows in micro-electro-mechanical systems possess relatively large Knudsen number and usually belong to the slip flow and transitional flow regimes. Recently the lattice Boltzmann method (LBM) was proposed by Nie et al. in Journal of Statistical Physics, vol. 107, pp. 279-289, in 2002 to simulate the microchannel and microcavity flows in the transitional flow regime. The present article intends to test the feasibility of doing so. The results of using the lattice Boltzmann method and the direct simulation Monte Carlo method show good agreement between them for small Kn (Kn = 0.0194), poor agreement for Kn = 0.194, and large deviation for Kn = 0.388 in simulating microchannel flows. This suggests that the present version of the lattice Boltzmann method is not feasible to simulate the transitional channel flow.