Data compilation on the biological response to ocean acidification: environmental and experimental context of data sets and related literature

The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation hosted at the data publisher PANGAEA was initiated in 2008 and is updated on a regular basis (doi:10.1594/PANGAEA.149999). By January 2015, a total of 581 data sets (over 4 000 000 data points) from 539 papers had been archived. Here we present the developments of this data compilation five years since its first description by Nisumaa et al. (2010). Most of study sites from which data archived are still in the Northern Hemisphere and the number of archived data from studies from the Southern Hemisphere and polar oceans are still relatively low. Data from 60 studies that investigated the response of a mix of organisms or natural communities were all added after 2010, indicating a welcomed shift from the study of individual organisms to communities and ecosystems. The initial imbalance of considerably more data archived on calcification and primary production than on other processes has improved. There is also a clear tendency towards more data archived from multifactorial studies after 2010. For easier and more effective access to ocean acidification data, the ocean acidification community is strongly encouraged to contribute to the data archiving effort, and help develop standard vocabularies describing the variables and define best practices for archiving ocean acidification data.

La «Relación de lugares y pueblos donde se saca la grana de la Ciudad de Cholula » (México) de 1600. Alcance y contenido

Asturias ha sido una región emigrante y América uno de los destinos más buscados por muchos de los asturianos emigrantes desde tiempos de la Edad Moderna. Fruto de esas migraciones, los archivos nobiliarios asturianos albergan algunos documentos que hacen referencia explícita al territorio americano o a las estancias de asturianos en América. En este trabajo se pretende dar a conocer un documento «americano» que hace referencia exclusiva a un territorio de América, la ciudad de Cholula (México) y que se conserva descontextualizado en un fondo nobiliario del occidente de Asturias. En él se hace una descripción cuantitativa y cualitativa del número de nopales y su cultivo en la Cholula del siglo XVI. Se realiza también un análisis de la naturaleza del documento como fuente histórica en relación con el fondo documental en el que se custodia y se contrasta con obras contemporáneas.

Kulttuurimaiseman syntyvaiheita Ala-Satakunnasta. Köyliönjärven kansallismaiseman kehittyminen 1600-1800-luvuilla Karhian ja Kankaanpään kylissä

Karhian ja Kankaanpään kylien muodostama jakokunta on 1600-1800-luvuilla muodostanut talonpoikaisen Köyliön muun pitäjän kuuluessa Köyliön kartanoiden alaisuuteen. Tutkimus keskittyy tämän kyläalueen maisemahistoriaan tarkastellen omistussuhteita ja maanjakoa. Tarkastelut on tehty pääosin 1700-lukuisten karttojen ja isojaon toimitusasiakirjojen kautta. Muuna tutkimusmateriaalina on käytetty arkistolähteitä sekä 1800-luvun ja 1900-luvun alun karttamateriaalia. Osana tutkimusta olen asemoinut yli 100 kartanosaa koordinaatistoon. Kylien asutus oli vielä 1600-luvulla keskittynyt vanhoille kylätonteille. Tutkimuksessa on tarkasteltu talojen ja asutuksen siirtymistä pois kylätonteilta 1700- ja 1800-lukujen aikana. Karhian vanha kylätontti autioitui 1800-luvun loppuun mennessä. Kankaanpään vanhalla kylätontilla tilakeskusten määrä väheni yhdeksästä kolmeen vastaavana ajanjaksona. Kylätonttien autioitumiseen vaikutti isojaon lisäksi hetkelliset omistusten keskittymiset. Tutkimuksessa havaitsin talonpoikaisen Köyliön olleen 1600- ja 1700-luvuilla uhattuna säätyläisten omistusten lisääntyessä kylässä. Aiemmassa historiankirjoituksessa romantisoitu talonpoikainen Köyliö ei ollutkaan niin itsenäinen kuin oli annettu ymmärtää. Uutena faktana havaitsin suurimman osan kylien taloista kuuluneen 1651-1679 Loimaan vapaaherrankunnan läänitykseen, joka osaltaan on estänyt Köyliön kartanon perintörälssin laajemman leviämisen alueelle. Kankaanpäähän muodostettiin 1700-luvun vaihteessa ratsutila, joka oli osin säätyläisten omistama. Pääosa kylän muista tiloista oli tämän rusthollin augmentteina käytännössä läänitetty ratsutilallisille. Talonpoikainen omistus vahventui ja keskittyi 1800-luvulla. Köyliönjärven rantaeroosion vaikutuksia alueen maisemahistoriaan tarkastellessani havaitsin Karhian kylän keskiaikaisen kylätontin ja tunnistamieni vanhimpien peltojen osin sortuneen järveen jo 1600-luvulla. Samasta syystä ennen rantaviivaa kulkenut Huovintie/Pyhän Henrikin tie siirrettiin isojaon yhteydessä karkaisemaan vanhan kylävainion pitkät peltosarat. Rantaeroosio saattaa selittää myös tämän pitkään viljellyn alueen arkeologisten löytöjen vähäisyyden. Tutkimuksen tavoitteena on myös arvioida poikkitieteellisten tutkimusmenetelmien soveltuvuutta maiseman ja historian tutkimiseen. Tämä tutkimus on poikkitieteellinen analyysi maisema-alueesta, eräänlainen maisemahistoriallinen selvitys, jonka tavoitteena on kuitenkin olla perinteisiä selvityksiä syväluotaavampi. Opinnäytetyön tekijä on aiemmalta koulutukseltaan yhdyskuntatekniikan diplomi-insinööri, jonka tutkinnossa maisemantutkimus oli sivuaineena. FM-tutkinnon sivuaineena tekijällä on Visuaalinen kulttuuri Aalto yliopiston Taideteollisesta korkeakoulusta.

Reproducing Women: Female Bodily Narratives and English Patriarchies, 1600-1660

During the early Stuart period, England’s return to male monarchal rule resulted in the emergence of a political analogy that understood the authority of the monarch to be rooted in the “natural” authority of the father; consequently, the mother’s authoritative role within the family was repressed. As the literature of the period recognized, however, there would be no family unit for the father to lead without the words and bodies of women to make narratives of dynasty and legitimacy possible. Early modern discourse reveals that the reproductive roles of men and women, and the social hierarchies that grow out of them, are as much a matter of human design as of divine or natural law. Moreover, despite the attempts of James I and Charles I to strengthen royal patriarchal authority, the role of the monarch was repeatedly challenged on stage and in print even prior to the British Civil Wars and the 1649 beheading of Charles I. Texts produced at moments of political crisis reveal how women could uphold the legitimacy of familial and political hierarchies, but they also disclose patriarchy’s limits by representing “natural” male authority as depending in part on women’s discursive control over their bodies. Due to the epistemological instability of the female reproductive body, women play a privileged interpretive role in constructing patriarchal identities. The dearth of definitive knowledge about the female body during this period, and the consequent inability to fix or stabilize somatic meaning, led to the proliferation of differing, and frequently contradictory, depictions of women’s bodies. The female body became a site of contested meaning in early modern discourse, with men and women struggling for dominance, and competitors so diverse as to include kings, midwives, scholars of anatomy, and female religious sectarians. Essentially, this competition came down to a question of where to locate somatic meaning: In the opaque, uncertain bodies of women? In women’s equally uncertain and unreliable words? In the often contradictory claims of various male-authored medical treatises? In the whispered conversations that took place between women behind the closed doors of birthing rooms? My dissertation traces this representational instability through plays by William Shakespeare, John Ford, Thomas Middleton, and William Rowley, as well as in monstrous birth pamphlets, medical treatises, legal documents, histories, satires, and ballads. In these texts, the stories women tell about and through their bodies challenge and often supersede male epistemological control. These stories, which I term female bodily narratives, allow women to participate in defining patriarchal authority at the levels of both the family and the state. After laying out these controversies and instabilities surrounding early modern women’s bodies in my first chapter, my remaining chapters analyze the impact of women’s words on four distinct but overlapping reproductive issues: virginity, pregnancy, birthing room rituals, and paternity. In chapters 2 and 3, I reveal how women construct the inner, unseen “truths” of their reproductive bodies through speech and performance, and in doing so challenge the traditional forms of male authority that depend on these very constructions for coherence. Chapter 2 analyzes virginity in Thomas Middleton and William Rowley’s play The Changeling (1622) and in texts documenting the 1613 Essex divorce, during which Frances Howard, like Beatrice-Joanna in the play, was required to undergo a virginity test. These texts demonstrate that a woman’s ability to feign virginity could allow her to undermine patriarchal authority within the family and the state, even as they reveal how men relied on women to represent their reproductive bodies in socially stabilizing ways. During the British Civil Wars and Interregnum (1642-1660), Parliamentary writers used Howard as an example of how the unruly words and bodies of women could disrupt and transform state politics by influencing court faction; in doing so, they also revealed how female bodily narratives could help recast political historiography. In chapter 3, I investigate depictions of pregnancy in John Ford’s tragedy, ‘Tis Pity She’s a Whore (1633) and in early modern medical treatises from 1604 to 1651. Although medical texts claim to convey definitive knowledge about the female reproductive body, in actuality male knowledge frequently hinged on the ways women chose to interpret the unstable physical indicators of pregnancy. In Ford’s play, Annabella and Putana take advantage of male ignorance in order to conceal Annabella’s incestuous, illegitimate pregnancy from her father and husband, thus raising fears about women’s ability to misrepresent their bodies. Since medical treatises often frame the conception of healthy, legitimate offspring as a matter of national importance, women’s ability to conceal or even terminate their pregnancies could weaken both the patriarchal family and the patriarchal state that the family helped found. Chapters 4 and 5 broaden the socio-political ramifications of women’s words and bodies by demonstrating how female bodily narratives are required to establish paternity and legitimacy, and thus help shape patriarchal authority at multiple social levels. In chapter 4, I study representations of birthing room gossip in Thomas Middleton’s play, A Chaste Maid in Cheapside (1613), and in three Mistris Parliament pamphlets (1648) that satirize parliamentary power. Across these texts, women’s birthing room “gossip” comments on and critiques such issues as men’s behavior towards their wives and children, the proper use of household funds, the finer points of religious ritual, and even the limits of the authority of the monarch. The collective speech of the female-dominated birthing room thus proves central not only to attributing paternity to particular men, but also to the consequent definition and establishment of the political, socio-economic, and domestic roles of patriarchy. Chapter 5 examines anxieties about paternity in William Shakespeare’s The Winter’s Tale (1611) and in early modern monstrous birth pamphlets from 1600 to 1647, in which children born with congenital deformities are explained as God’s punishment for the sexual, religious, and/or political transgressions of their parents or communities. Both the play and the pamphlets explore the formative/deformative power of women’s words and bodies over their offspring, a power that could obscure a father’s connection to his children. However, although the pamphlets attempt to contain and discipline women’s unruly words and bodies with the force of male authority, the play reveals the dangers of male tyranny and the crucial role of maternal authority in reproducing and authenticating dynastic continuity and royal legitimacy. My emphasis on the socio-political impact of women’s self-representation distinguishes my work from that of scholars such as Mary Fissell and Julie Crawford, who claim that early modern beliefs about the female reproductive body influenced textual depictions of major religious and political events, but give little sustained attention to the role female speech plays in these representations. In contrast, my dissertation reveals that in such texts, patriarchal society relies precisely on the words women speak about their own and other women’s bodies. Ultimately, I argue that female bodily narratives were crucial in shaping early modern culture, and they are equally crucial to our critical understanding of sexual and state politics in the literature of the period.

Turun kaupungin ruutukaava-alueen kartografinen kuvaaminen 1600-luvulta nykypäivään

Kaupunkikartoituksen historia alkaa Suomessa Olof Gangiuksen piirtämästä kaupunkikartasta vuodelta 1634. Tämä kartta on Suomen vanhin mittauksiin perustuva kaupunkikartta. Myöhemmin Turusta, Suomen vanhimmasta kaupungista, on julkaistu karttoja runsaasti, joista tässä työssä käsitellään kymmentä aikakaudelleen tyypillistä kuvausta vuodesta 1634 vuoteen 2011. Tutkimuksessa vertaillaan karttoja, joiden mittaustavassa tai valmistusajankohdassa on jokin tietty erikoisuutensa tai tunnusmerkkinsä. Kaikki tutkittavat historialliset kartat on oikaistu koordinaatistoon paikkatieto-ohjelmalla. Tutkimuksessa selvitetään miten koordinaatistoon oikaistut eri aikakausien kartat kuvaavat Turun ruutukaava-aluetta. Vertailussa keskitytään pääasiassa tiettyihin kohteisiin (tuomiokirkkoon, Turun linnaan, Vartiovuorenmäkeen ja Kauppatoriin), koska ne ovat löydettävissä suurimmassa osassa kartoista. Tutkimuksessa tarkastellaan tapahtuneita kaupunkikuvaamisessa tapahtuineita muutoksia vuosisatojen ajalta ja syitä niihin. Lisäksi pohditaan paikkatieto-ohjelmien hyötyjä ja haasteita historiallisiin karttoihin perustuvissa tutkimuksissa. Tutkimuksessa vertaillaan historiallisia kaupunkikarttoja retrospektiivisesti toisiinsa sekä lisäksi jokaista karttaa verrataan nykyiseen ruutukaavarakenteeseen.. Tutkimuksessa on myös selvitetty kaupunkikartoituksen historiaa laajasti. Tuloksissa esiin nousi Turun kaupungin muuttuminen maaseutumaisesta asutuskeskittymästä runsasväestöiseksi kaupungiksi. Kasvanut väestömäärä ja runsastunut rakennus- ja liikennekanta ovat muovanneet kaupunkirakennetta vahvasti ja nämä muutokset näkyvät kartoilla selkeästi. Teknologian sekä mittausvälineiden ja -tapojen kehittyminen ovat osaltaan muokanneet eri aikakauden karttoja. Tutkimuksessa selvisi karttojen mittaustulosten tarkkuuden suuri vaihtelevuus riippumatta kartan valmistusvuodesta. Aineiston vanhin kartta on virhekeskiarvoa vertaillen parempi mittaustarkkuudeltaan kuin aineiston nuorin oikaistu kartta. Tutkimustulosten perusteella Turun ruutukaava-alueella on suuri määrä kohteita, joiden kuvaaminen kartoilla on ollut tärkeää kartoitustoiminnan aloituksesta asti.

A kingdom near lost: English military recovery in Ireland, 1600-03

Ireland was rarely a peaceful realm for Elizabeth I, but Hugh O’Neill, Earl of Tyrone and his allies brought the edifice of English power in Ireland to the brink of collapse. The war in Ireland at the end of the sixteenth century devoured money, lives and reputations at a prodigious rate. However seven years of Irish success ended when in 1600 the Queen appointed Charles Blount, Lord Mountjoy as Lord Deputy. Success replaced failure, but only after the new Lord Deputy transformed English strategy and rebuilt the army into an instrument fit for purpose.

Suicide and community psychiatric care

A preliminary survey of 34 suicides among patients attending community services for the chronically mentally ill revealed a rate of 520 per 100,000 admitted. In contrast to earlier hospital surveys, no risk variables were identified for patients dying by suicide. Thirty-four percent of suicides occurred within one week of the last treatment and 59% within 3 months of service entry. It appears that early and intensive follow-up may be necessary to prevent suicide among patients receiving community psychiatric care.

Relationship over time between psychological distress and physical activity in colorectal cancer survivors

Purpose Increased physical activity in colorectal cancer patients is related to improved recurrence free and overall survival. Psychological distress after cancer may place patients at risk of reduced physical activity; but paradoxically also act as a motivator for positive lifestyle change. The relationship between psychological distress and physical activity after cancer over time has not been described. Methods A prospective survey of 1966 (57% response) colorectal cancer survivors assessed the psychological distress variables of anxiety, depression, somatisation, cancer threat appraisal as predictors of physical activity five, 12, 24 and 36 months post-diagnosis 978 respondents had valid data for all time points. Results Higher somatisation was associated with greater physical inactivity (Relative risk ratio (RRR) =1.12; 95% CI=[1.1, 1.2]) and insufficient physical activity (RRR=1.05; [0.90, 1.0]). Respondents with a more positive appraisal of their cancer were significantly (p=0.031) less likely to be inactive (RRR=0.95; [0.90, 1.0]) or insufficiently active (RRR=0.96). Fatigued and obese respondents and current smokers were more inactive. Respondents whose somatisation increased between two time periods were less likely to increase their physical activity over the same period (p<0.001). Respondents with higher anxiety at one time period were less likely to have increased their activity at the next assessment (p=0.004). There was no association between depression and physical activity. Conclusions Cancer survivors who experience somatisation and anxiety are at greater risk of physical inactivity. The lack of a clear relationship between higher psychological distress and increasing physical activity argues against distress as a motivator to exercise in these patients.

Low-fat oxidation may be a factor in obesity among men with schizophrenia

Objective: Obesity associated with atypical antipsychotic medications is an important clinical issue for people with schizophrenia. The purpose of this project was to determine whether there were any differences in resting energy expenditure (REE) and respiratory quotient (RQ) between men with schizophrenia and controls. Method: Thirty-one men with schizophrenia were individually matched for age and relative body weight with healthy, sedentary controls. Deuterium dilution was used to determine total body water and subsequently fat-free mass (FFM). Indirect calorimetry using a Deltatrac metabolic cart was used to determine REE and RQ. Results: When corrected for FFM, there was no significant difference in REE between the groups. However, fasting RQ was significantly higher in the men with schizophrenia than the controls. Conclusion: Men with schizophrenia oxidised proportionally less fat and more carbohydrate under resting conditions than healthy controls. These differences in substrate utilisation at rest may be an important consideration in obesity in this clinical group.

Poly-immunoglobulin receptor-mediated transport of IgA into the male genital tract is important for clearance of chlamydia muridarum infection

Problem: Chlamydia trachomatis is the most common sexually transmitted infection worldwide. While infection in females requires a Th1 response for clearance, such a response in males may disrupt the immune privileged nature of the male reproductive tract, potentially contributing to infertility. Method of study: We investigated the role of IgA in protection against an intrapenile Chlamydia muridarum infection of C57BL/6 and pIgR−/− mice. Results: Here, we show that the poly immunoglobulin receptor is the main pathway for IgA transport into the male reproductive tract. The high levels of IgA seen in prostatic fluid of wild-type mice correlate with reduction in chlamydial infection both in vitro and in vivo. Conclusion: These findings indicate that a Chlamydia vaccine that induces neutralizing IgA in the prostate will aid in the protection against infection in males.