Seal census raw data of campaigns EMAGE I to V between 1996 and 2000 with links to datasets

The development of models of marine ecosystems in the Southern Ocean is becoming increasingly important as a means of understanding and managing impacts such as exploitation and climate change. Collating data from disparate sources, and understanding biases or uncertainties inherent in those data, are important first steps for improving ecosystem models. This review focuses on seals that breed in ice habitats of the Southern Ocean (i.e. the crabeater seal, Lobodon carcinophaga; Ross seal, Ommatophoca rossii; leopard seal, Hydrurga leptonyx; and Weddell seal, Leptonychotes weddellii). Data on populations (abundance and trends in abundance), distribution and habitat use (movement, key habitat and environmental features) and foraging (diet) are summarised, and potential biases and uncertainties inherent in those data are identified and discussed. Spatial and temporal gaps in knowledge of the populations, habitats and diet of each species are also identified.

Distribution, density and abundance of Antarctic ice seals off Queen Maud Land and the eastern Weddell Sea

The Antarctic Pack Ice Seal (APIS) Program was initiated in 1994 to estimate the abundance of four species of Antarctic phocids: the crabeater seal Lobodon carcinophaga, Weddell seal Leptonychotes weddellii, Ross seal Ommatophoca rossii and leopard seal Hydrurga leptonyx and to identify ecological relationships and habitat use patterns. The Atlantic sector of the Southern Ocean (the eastern sector of the Weddell Sea) was surveyed by research teams from Germany, Norway and South Africa using a range of aerial methods over five austral summers between 1996-1997 and 2000-2001. We used these observations to model densities of seals in the area, taking into account haul-out probabilities, survey-specific sighting probabilities and covariates derived from satellite-based ice concentrations and bathymetry. These models predicted the total abundance over the area bounded by the surveys (30°W and 10°E). In this sector of the coast, we estimated seal abundances of: 514 (95 % CI 337-886) x 10**3 crabeater seals, 60.0 (43.2-94.4) x 10**3 Weddell seals and 13.2 (5.50-39.7) x 10**3 leopard seals. The crabeater seal densities, approximately 14,000 seals per degree longitude, are similar to estimates obtained by surveys in the Pacific and Indian sectors by other APIS researchers. Very few Ross seals were observed (24 total), leading to a conservative estimate of 830 (119-2894) individuals over the study area. These results provide an important baseline against which to compare future changes in seal distribution and abundance.

Distribution and Conservation of the Antillean Manatee in Hispaniola

Antillean manatees (Trichechus manatus manatus) were heavily hunted in the past throughout the Wider Caribbean Region (WCR), and are currently listed as endangered on the IUCN Red List of Threatened Species. In most WCR countries, including Haiti and the Dominican Republic, remaining manatee populations are believed to be small and declining, but current information is needed on their status, distribution, and local threats to the species.

To assess the past and current distribution and conservation status of the Antillean manatee in Hispaniola, I conducted a systematic review of documentary archives dating from the pre-Columbian era to 2013. I then surveyed more than 670 artisanal fishers from Haiti and the Dominican Republic in 2013-2014 using a standardized questionnaire. Finally, to identify important areas for manatees in the Dominican Republic, I developed a country-wide ensemble model of manatee distribution, and compared modeled hotspots with those identified by fishers.

Manatees were historically abundant in Hispaniola, but were hunted for their meat and became relatively rare by the end of the 19th century. The use of manatee body parts diversified with time to include their oil, skin, and bones. Traditional uses for folk medicine and handcrafts persist today in coastal communities in the Dominican Republic. Most threats to Antillean manatees in Hispaniola are anthropogenic in nature, and most mortality is caused by fisheries. I estimated a minimum island-wide annual mortality of approximately 20 animals. To understand the impact of this level of mortality, and to provide a baseline for measuring the success of future conservation actions, the Dominican Republic and Haiti should work together to obtain a reliable estimate of the current population size of manatees in Hispaniola.

In Haiti, the survey of fishers showed a wider distribution range of the species than suggested by the documentary archive review: fishers reported recent manatee sightings in seven of nine coastal departments, and three manatee hotspot areas were identified in the north, central, and south coasts. Thus, the contracted manatee distribution range suggested by the documentary archive review likely reflects a lack of research in Haiti. Both the review and the interviews agreed that manatees no longer occupy freshwater habitats in the country. In general, more dedicated manatee studies are needed in Haiti, employing aerial, land, or boat surveys.

In the Dominican Republic, the documentary archive review and the survey of fishers showed that manatees still occur throughout the country, and occasionally occupy freshwater habitats. Monte Cristi province in the north coast, and Barahona province in the south coast, were identified as focal areas. Sighting reports of manatees decreased from Monte Cristi eastwards to the adjacent province in the Dominican Republic, and westwards into Haiti. Along the north coast of Haiti, the number of manatee sighting and capture reports decreased with increasing distance to Monte Cristi province. There was good agreement among the modeled manatee hotspots, hotspots identified by fishers, and hotspots identified during previous dedicated manatee studies. The concordance of these results suggests that the distribution and patterns of habitat use of manatees in the Dominican Republic have not changed dramatically in over 30 years, and that the remaining manatees exhibit some degree of site fidelity. The ensemble modeling approach used in the present study produced accurate and detailed maps of manatee distribution with minimum data requirements. This modeling strategy is replicable and readily transferable to other countries in the Caribbean or elsewhere with limited data on a species of interest.

The intrinsic value of manatees was stronger for artisanal fishers in the Dominican Republic than in Haiti, and most Dominican fishers showed a positive attitude towards manatee conservation. The Dominican Republic is an upper middle income country with a high Human Development Index. It possesses a legal framework that specifically protects manatees, and has a greater number of marine protected areas, more dedicated manatee studies, and more manatee education and awareness campaigns than Haiti. The constant presence of manatees in specific coastal segments of the Dominican Republic, the perceived decline in the number of manatee captures, and a more conservation-minded public, offer hope for manatee conservation, as non-consumptive uses of manatees become more popular. I recommend a series of conservation actions in the Dominican Republic, including: reducing risks to manatees from harmful fishing gear and watercraft at confirmed manatee hotspots; providing alternative economic alternatives for displaced fishers, and developing responsible ecotourism ventures for manatee watching; improving law enforcement to reduce fisheries-related manatee deaths, stop the illegal trade in manatee body parts, and better protect manatee habitat; and continuing education and awareness campaigns for coastal communities near manatee hotspots.

In contrast, most fishers in Haiti continue to value manatees as a source of food and income, and showed a generally negative attitude towards manatee conservation. Haiti is a low income country with a low Human Development Index. Only a single dedicated manatee study has been conducted in Haiti, and manatees are not officially protected. Positive initiatives for manatees in Haiti include: protected areas declared in 2013 and 2014 that enclose two of the manatee hotspots identified in the present study; and local organizations that are currently working on coastal and marine environmental issues, including research and education on marine mammals. Future conservation efforts for manatees in Haiti should focus on addressing poverty and providing viable economic alternatives for coastal communities. I recommend a community partnership approach for manatee conservation, paired with education and awareness campaigns to inform coastal communities about the conservation situation of manatees in Haiti, and to help change their perceived value. Haiti should also provide legal protection for manatees and their habitat.

(Table 1) Rodent (lemming and vole) densities in 5 study areas in the Canadian Arctic

Lemmings construct nests of grass and moss under the snow during winter, and counting these nests in spring is 1 method of obtaining an index of winter density and habitat use. We counted winter nests after snow melt on fixed grids on 5 areas scattered across the Canadian Arctic and compared these nest counts to population density estimated by mark-recapture on the same areas in spring and during the previous autumn. Collared lemmings were a common species in most areas, some sites had an abundance of brown lemmings, and only 2 sites had tundra voles. Winter nest counts were correlated with lemming densities estimated in the following spring (r(s) = 0.80, P < 0.001), but less well correlated with densities the previous autumn (r(s) = 0.55, P < 0.001). Winter nest counts can be used to predict spring lemming densities with a log-log regression that explains 64% of the observed variation. Winter nest counts are best treated as an approximate index and should not be used when precise, quantitative lemming density estimates are required. Nest counts also can be used to provide general information about habitat-use in winter, predation rates by weasels, and the extent of winter breeding.

Environmental influence on the seasonal movements of satellite-tracked ocean sunfish Mola mola in the north-east Atlantic

Determining the habitat use of mobile marine species is important for understanding responses to climate change and aids the implementation of management and conservation measures. Inference of preferred habitat use has been greatly improved by combining satellite-based oceanographic data with animal tracking techniques. Although there have been several satellite-tracking studies on ocean sunfish Mola mola, limited information is available about either horizontal or vertical environmental preferences. In this study, both geographical movements and diving behaviour of ocean sunfish were explored together with the environmental factors influencing this species’ space use in the north-east Atlantic.

Environmental influence on the seasonal movements of satellite-tracked ocean sunfish Mola mola in the north-east Atlantic

Determining the habitat use of mobile marine species is important for understanding responses to climate change and aids the implementation of management and conservation measures. Inference of preferred habitat use has been greatly improved by combining satellite-based oceanographic data with animal tracking techniques. Although there have been several satellite-tracking studies on ocean sunfish Mola mola, limited information is available about either horizontal or vertical environmental preferences. In this study, both geographical movements and diving behaviour of ocean sunfish were explored together with the environmental factors influencing this species’ space use in the north-east Atlantic.

Modelling the niche for a marine vertebrate: A case study incorporating behavioural plasticity, proximate threats and climate change

[EN] The integration of satellite telemetry, remotely sensed environmental data, and habitat/environmental modelling has provided for a growing understanding of spatial and temporal ecology of species of conservation concern. The Republic of Cape Verde comprises the only substantial rookery for the loggerhead turtle Caretta caretta in the eastern Atlantic. A size related dichotomy in adult foraging patterns has previously been revealed for adult sea turtles from this population with a proportion of adults foraging neritically, whilst the majority forage oceanically. Here we describe observed habitat use and employ ecological niche modelling to identify suitable foraging habitats for animals utilising these two distinct behavioural strategies. We also investigate how these predicted habitat niches may alter under the influence of climate change induced oceanic temperature rises.

Renar och vindkraft II : Vindkraft i drift och effekter på renar och renskötsel

Utbyggnaden av vindkraft inom renskötselområdet har ökat markant det senaste decenniet, trots att kunskapen om påverkan av vindkraftsetableringar ännu inte är fullt utredd och dokumenterad. I den här rapporten beskriver vi framförallt hur vindkraftparker i driftsfas påverkar renarna och renskötseln i tre olika områden. I Malå sameby har vi studerat kalvningsområdet kring Storliden och Jokkmokkslidens vindkraftparker. I Vilhelmina Norra sameby har vi studerat vinterbetesområdet kring Stor-Rotlidens vindkraftpark, samt Lögdeålandets betesområde med Gabrielsbergets vindkraftpark som används av Byrkije reinbetesdistrikt från Norge. För att få en helhetsbild av hur renarna använder sitt betesområde är det viktigt att studera renarnas betes- och förflyttningsmönster långsiktigt och över hela deras betesområde och inte bara inom det lokala området nära parken. Det är också viktigt att ta hänsyn till att renarnas betesutnyttjande skiftar från år till år och mellan olika årstider beroende på väderlek och andra yttre förutsättningar. Vi vill också understryka vikten av att kombinera den traditionella kunskapen från renskötarna med vedertagna vetenskapliga analysmetoder för att besvara de frågor som är viktiga för att kunna bedriva en hållbar renskötsel. Vi har undersökt renarnas användning av områdena genom att utföra spillningsinventeringar under åren 2009-2015 (endast i Malå sameby), och genom att följa renar utrustade med GPS-halsband under åren 2005-2015. Datat är insamlat före och under byggfas och under driftsfas (för Gabrielsberget finns GPS-data endast för driftsfasen). Vi har analyserat data genom att utveckla statistiska modeller för val av betesområde för varje område där vi har beräknat hur renarna förhåller sig till vindkraftparksområdet före, under och efter byggnation, och på Gabrielsberget när parken varit avstängd under 40 dagar och under drift vid olika renskötselsituationer. Genom intervjuer, möten och samtal, samt information från Gabrielsbergets vindkraftparks kontrollprogram, har vi tagit del av renskötarnas erfarenheter av hur renarnas beteende, och därmed även renskötseln, påverkats av vindkraftsutbyggnaden i respektive område. Våra resultat visar att renarna både på kalvnings- och på vinterbetesområden påverkas negativt av vindkraftsetableringarna (Tabell a). Renarna undviker att beta i områden där de kan se och/eller höra vindkraftsverken och föredrar att vistas i områden där vindkraftverken är skymda. I kalvningsområdet i Malå ökade användningen av skymda områden med 60 % under driftsfas. I vinterbetesområdet på Gabrielsberget, när renarna utfodrades i parken och kantbevakades intensivt för att stanna i parkområdet under driftsfas, ökade användningen av skymda områden med 13 % jämfört med när de inte var utfodrade och fick ströva mer fritt. Resultaten visar också att renarna minskar sin användning av området nära vindkraftparkerna. I kalvningslandet i Malå minskar renarna sin användning av områden inom 5 km från parkerna med 16-20 %. Vintertid vid Gabrielsbergets vindkraftpark undvek renarna parken med 3 km. Våra resultat visar även att renarnas betesro minskar inom en radie på 4 km från vindkraftparkerna under kalvningsperioden och tiden därefter i jämförelse med perioden före byggfas. Exakta avstånd som renarna påverkas beror på förutsättningarna i respektive område, exempelvis hur topografin ser ut eller om området är begränsat av stängsel eller annan infrastruktur. Förändringarna i habitatutnyttjande i våra studieområden blev tydligare när parkerna var centralt belägna i renarnas betesområde, som i kalvningsområdet i Malå eller i vinterbeteslandet på Gabrielsberget, medan det inte var lika tydliga effekter kring Stor-Rotlidens park, som ligger i utkanten av ett huvudbetesområde. Oftast är snöförhållandena bättre ur betessynpunkt högre upp i terrängen än nere i dalgångarna, på grund av stabilare temperatur, vind som blåser bort snötäcket och mer variation i topografin. Därför kan etablering av vindkraftparker i höglänta områden försämra möjligheten att använda sådana viktiga reservbetesområden under vintrar med i övrigt dåliga snöförhållanden, vilka blir allt vanligare i och med klimatförändringarna. Våra resultat tyder inte direkt på att renarna påverkats negativt under dåliga betesvintrar men fler år av studier behövs för att ytterligare klargöra hur vindkraft påverkar renarna under dessa vintrar. Våra studier har visat att etablering av vindkraft har konsekvenser för renskötseln under både barmarkssäsongen och under vintern, men effekterna förmodas få störst inverkan inom vinterbetesområdet där det är svårt att hitta alternativa betesområden för renarna. Under sommaren är betestillgången oftast mindre begränsad och renarna kan lättare hitta alternativa områden. En direkt konsekvens av Gabrielsbergets vindkraftpark som är placerad mitt i ett vinterbetesområde har blivit att renarna behöver tillskottsutfodras och bevakas intensivare för att de inte ska gå ut ur området. När den naturliga vandringen mellan olika betesområden störs för att renarna undviker att vistas i ett område kan det leda till att den totala tillgången till naturligt bete minskar och att man permanent måste tillskottsutfodra, alternativt minska antalet renar. Annan infrastruktur som vägar och kraftledningar påverkar också renarna. Vid Storliden och Jokkmokksliden och vid Stor-Rotliden där data samlats in innan vindkraftparken uppfördes visar våra resultat att renarna undviker de omkringliggande landsvägarna redan innan parkerna etablerades. Vid Stor-Rotliden ökar dock renarna användningen av områden nära vägarna efter att parken är byggd. På Gabrielsberget, där vi endast har data under drifttiden, är renarna närmare vägarna (även stora vägar som E4) när renskötarna minskar på kantbevakningen för att inte hålla renarna nära parken. Detta ökar naturligtvis risken för trafikolyckor och innebär att renskötarna måste bevaka dessa områden intensivare. Sist i rapporten presenterar vi förslag till åtgärder som kan användas för att underlätta arbetet för renskötseln om det är så att en vindkraftpark redan är byggd. Några exempel på åtgärder som är direkt kopplat till parken är att stänga av vägarna in i vindkraftparken för att förhindra nöjeskörning med skoter och bil under den tiden renarna vistas i området samt tät dialog mellan vindkraftsbolag och sameby angående vinterväghållningen av vägarna till och inom vindkraftparken. Andra mer regionala åtgärder för att förbättra förutsättningarna för renskötselarbetet på andra platser för samebyn, kan vara att sätta stängsel längst större vägar och järnvägar (t.ex. E4:an eller stambanan) i kombination med strategiskt utplacerade ekodukter. Detta för att underlätta och återställa möjligheterna till renarnas fria strövning och renskötarnas flytt av renar mellan olika betesområden.   

Migration and Residence Patterns of Salmonids in Puget Sound, Washington

Thesis (Ph.D.)--University of Washington, 2016-08

Génomique des populations et association génotype-phénotype des écotypes de touladi du Lac Supérieur

L’apparition et le maintien d’écotypes adaptés à différentes niches écologiques, en situation de sympatrie, est régit par une multitude de facteurs. Ceux-ci sont essentiels pour la compréhension des processus évolutifs impliqués mais aussi pour la gestion et la conservation des populations en question. Le touladi (Salvelinus namaycush) est un salmonidé reconnu pour la présence d’écotypes liée à l’utilisation des ressources et de l’habitat à travers l’Amérique du Nord. Un total de quatre écotypes a été décrit vivant dans le lac Supérieur, se différenciant par l’habitat utilisé, l’alimentation, la morphologie ainsi que l’ostéologie. L’objectif principal de la présente étude était de quantifier l’étendue de la différentiation génétique entre les différents sites d’échantillonnage ainsi qu’entre les différents écotypes. Un second objectif était d’identifier des marqueurs potentiellement sous sélection entre les différents écotypes reflétant de possibles adaptations locales. Pour ce faire, un total de 486 individus, représentant les quatre écotypes pour chacun des quatre sites d’échantillonnages, a été génotypé à 6822 SNPs (polymorphisme de nucléotide simple). De plus, des analyses morphométriques ont été effectuées afin de caractériser l’ampleur de la divergence morphologique entre les écotypes à chacun des sites. Les résultats ont montré une différentiation génétique, bien que faible, plus prononcée entre les sites d’échantillonnage qu’entre les écotypes à chacun de ces sites. Des indices indiquant la présence de sélection divergente ont aussi été décelés entre les écotypes ou en association avec des variations morphologiques, dont certains marqueurs représentant des traits importants dans la divergence des différents écotypes. Les résultats de cette étude permettront une meilleure gestion et conservation des populations de touladi du lac Supérieur en plus d’éclairer le choix possible de populations sources pour l’ensemencement des autres Grands Lacs.

Navigating uncertain waters: a critical review of inferring foraging behaviour from location and dive data in pinnipeds

In the last thirty years, the emergence and progression of biologging technology has led to great advances in marine predator ecology. Large databases of location and dive observations from biologging devices have been compiled for an increasing number of diving predator species (such as pinnipeds, sea turtles, seabirds and cetaceans), enabling complex questions about animal activity budgets and habitat use to be addressed. Central to answering these questions is our ability to correctly identify and quantify the frequency of essential behaviours, such as foraging. Despite technological advances that have increased the quality and resolution of location and dive data, accurately interpreting behaviour from such data remains a challenge, and analytical methods are only beginning to unlock the full potential of existing datasets. This review evaluates both traditional and emerging methods and presents a starting platform of options for future studies of marine predator foraging ecology, particularly from location and two-dimensional (time-depth) dive data. We outline the different devices and data types available, discuss the limitations and advantages of commonly-used analytical techniques, and highlight key areas for future research. We focus our review on pinnipeds - one of the most studied taxa of marine predators - but offer insights that will be applicable to other air-breathing marine predator tracking studies. We highlight that traditionally-used methods for inferring foraging from location and dive data, such as first-passage time and dive shape analysis, have important caveats and limitations depending on the nature of the data and the research question. We suggest that more holistic statistical techniques, such as state-space models, which can synthesise multiple track, dive and environmental metrics whilst simultaneously accounting for measurement error, offer more robust alternatives. Finally, we identify a need for more research to elucidate the role of physical oceanography, device effects, study animal selection, and developmental stages in predator behaviour and data interpretation.

Spatial behavior of two coral reef fishes within a Caribbean Marine Protected Area

A better understanding of the key ecological processes of marine organisms is fundamental to improving design and effective implementation of marine protected areas (MPAs) and marine biodiversity. The movement behavior of coral reef fish is a complex mechanism that is highly linked to species life-history traits, predation risk and food resources. We used passive acoustic telemetry to study monthly, daily and hourly movement patterns and space use in two species, Schoolmaster snapper (Lutjanus apodus) and Stoplight parrotfish (Sparisoma viride). We investigated the spatial overlap between the two species and compared intra-specific spatial overlap between day and night. Presence-absence models showed different diel presence and habitat use patterns between the two species. We constructed a spatial network of the movement patterns, which showed that for both species when fish were detected by the array of receivers most movements were made around the coral reef habitat while occasionally moving to silt habitats. Our results show that most individuals made predictable daily crepuscular migrations between different locations and habitat types, although individual behavioral changes were observed for some individuals across time. Our study also highlights the necessity to consider multiple species during MPA implementation and to take into account the specific biological and ecological traits of each species. The low number of fish detected within the receiver array, as well as the intraspecific variability observed in this study, highlight the need to compare results across species and individuals to be used for MPA management.

Using satellite telemetry and environmental niche modelling to inform conservation targets for a long-distance migratory raptor in its wintering grounds

Understanding the ecology of migratory birds during the non-breeding season is necessary for ensuring their conservation. Using satellite telemetry data we describe winter ranging behaviour and movements of pallid harriers Circus macrourus that bred in Kazakhstan. We developed an ecological niche model for the species in Africa, to identify the most suitable wintering areas for pallid harriers and the importance of habitat in determining the location of those areas. We also assessed how well represented suitable areas are in the network of protected areas. Individual harriers showed relatively high fidelity to wintering areas but with potential for interannual changes. The ecological niche model highlighted the importance of open habitats with natural vegetation. Most suitable areas for the species were located in eastern Africa. Suitable areas had a patchy distribution but were relatively well included in the network of protected areas. The preferential use of habitats with natural vegetation by wintering pallid harriers and the patchiness of the most suitable areas highlight the harrier's vulnerability to land-use changes and the associated loss of natural vegetation in Africa. Conservation of harriers could be enhanced by preserving natural grasslands within protected areas and improving habitat management in the human-influenced portions of the species’ core wintering areas.

Spatiotemporal Variation in Abundance and Social Structure of Bottlenose Dolphins in the Florida Coastal Everglades

Bottlenose dolphins (Tursiops truncatus) are large-bodied predators that are locally abundant in the coastal Everglades. Because of their potential to exert strong top-down effects on their communities, it is important to understand how spatiotemporal variation in biotic and abiotic factors affects the abundance and behavior of dolphins. This study combined two years of transect surveys with photographic identification methods to assess spatiotemporal variation in the abundance and group sizes of bottlenose dolphins across four large regions of the coastal Everglades including the Shark and Harney Rivers, Whitewater Bay, and coastal oceans of the Gulf of Mexico and Florida Bay. Dolphin abundance was similar across wet and dry seasons, except in river habitats where abundances were higher during the dry season. Group sizes were largest in Florida Bay and open water. Dolphins may be relatively resilient to abiotic changes in the coastal Everglades, with the possible exception of river habitats.