Bioaccessibility of metals and human health risk assessment in community urban gardens

Pseudo-total (i.e. aqua regia extractable) and gastric-bioaccessible (i.e. glycine + HCl extractable) concentrations of Ca, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were determined in a total of 48 samples collected from six community urban gardens of different characteristics in the city of Madrid (Spain). Calcium carbonate appears to be the soil property that determines the bioaccessibility of a majority of those elements, and the lack of influence of organic matter, pH and texture can be explained by their low levels in the samples (organic matter) or their narrow range of variation (pH and texture). A conservative risk assessment with bioaccessible concentrations in two scenarios, i.e. adult urban farmers and children playing in urban gardens, revealed acceptable levels of risk, but with large differences between urban gardens depending on their history of land use and their proximity to busy areas in the city center. Only in a worst-case scenario in which children who use urban gardens as recreational areas also eat the produce grown in them would the risk exceed the limits of acceptability

Impact on agronomic parameters in Vines and wine quality of foliar treatments with specific fractions of yeast derivatives

In hot Spanish climate, Toledo, Syrah and Sauvignon blanc Vineyard were treated in pre veraison with yeast derivatives RD-LM and RD- LA to stimulate phenolic and aromatic maturity respectively (application of yeast derivatives specifically designed to be used with the patent foliar application technology WO/2014/024039, Lallemand Inc. Canada). For studied effects in berry and wine composition three harvest time had been done. Experimented yeast derivatives had no significant effects on yield components and vegetative growth in both varieties. The Syrah RD-LM variety presented higher total and extractable anthocyanins and also more amount of tannins, although this last ones are not evident in the sensory analysis. The sensory analysis of wine has given very similar results in both varieties but with significant results in favored by phenols and tannins derived RD- LM and RD-LA respectively.

Enhanced methionine levels and increased nutritive value of seeds of transgenic lupins (Lupinus angustifolius L.) expressing a sunflower seed albumin gene

With the aim of improving the nutritive value of an important grain legume crop, a chimeric gene specifying seed-specific expression of a sulfur-rich, sunflower seed albumin was stably transformed into narrow-leafed lupin (Lupinus angustifolius L.). Sunflower seed albumin accounted for 5% of extractable seed protein in a line containing a single tandem insertion of the transferred DNA. The transgenic seeds contained less sulfate and more total amino acid sulfur than the nontransgenic parent line. This was associated with a 94% increase in methionine content and a 12% reduction in cysteine content. There was no statistically significant change in other amino acids or in total nitrogen or total sulfur contents of the seeds. In feeding trials with rats, the transgenic seeds gave statistically significant increases in live weight gain, true protein digestibility, biological value, and net protein utilization, compared with wild-type seeds. These findings demonstrate the feasibility of using genetic engineering to improve the nutritive value of grain crops.

NMR characterization of altered lignins extracted from tobacco plants down-regulated for lignification enzymes cinnamylalcohol dehydrogenase and cinnamoyl-CoA reductase

Homologous antisense constructs were used to down-regulate tobacco cinnamyl-alcohol dehydrogenase (CAD; EC 1.1.1.195) and cinnamoyl-CoA reductase (CCR; EC 1.2.1.44) activities in the lignin monomer biosynthetic pathway. CCR converts activated cinnamic acids (hydroxycinnamoyl–SCoAs) to cinnamaldehydes; cinnamaldehydes are then reduced to cinnamyl alcohols by CAD. The transformations caused the incorporation of nontraditional components into the extractable tobacco lignins, as evidenced by NMR. Isolated lignin of antisense-CAD tobacco contained fewer coniferyl and sinapyl alcohol-derived units that were compensated for by elevated levels of benzaldehydes and cinnamaldehydes. Products from radical coupling of cinnamaldehydes, particularly sinapaldehyde, which were barely discernible in normal tobacco, were major components of the antisense-CAD tobacco lignin. Lignin content was reduced in antisense-CCR tobacco, which displayed a markedly reduced vigor. That lignin contained fewer coniferyl alcohol-derived units and significant levels of tyramine ferulate. Tyramine ferulate is a sink for the anticipated build-up of feruloyl–SCoA, and may be up-regulated in response to a deficit of coniferyl alcohol. Although it is not yet clear whether the modified lignins are true structural components of the cell wall, the findings provide further indications of the metabolic plasticity of plant lignification. An ability to produce lignin from alternative monomers would open new avenues for manipulation of lignin by genetic biotechnologies.

Phototactic Migration of Dictyostelium Cells Is Linked to a New Type of Gelsolin-related Protein

The molecular and functional characterization of a 125-kDa Ca2+-extractable protein of the Triton X-100–insoluble fraction of Dictyostelium cells identified a new type of a gelsolin-related molecule. In addition to its five gelsolin segments, this gelsolin-related protein of 125 kDa (GRP125) reveals a number of unique domains, two of which are predicted to form coiled-coil regions. Another distinct attribute of GRP125 concerns the lack of sequence elements known to be essential for characteristic activities of gelsolin-like proteins, i.e. the severing, capping, or nucleation of actin filaments. The subcellular distribution of GRP125 to vesicular compartments suggests an activity of GRP125 different from actin-binding, gelsolin-related proteins. GRP125 expression is tightly regulated and peaks at the transition to the multicellular pseudoplasmodial stage of Dictyostelium development. GRP125 was found indispensable for slug phototaxis, because slugs fail to correctly readjust their orientation in the absence of GRP125. Analysis of the GRP125-deficient mutant showed that GRP125 is required for coupling photodetection to the locomotory machinery of slugs. We propose that GRP125 is essential in the natural environment for the propagation of Dictyostelium spores. We also present evidence for further representatives of the GRP125 type in Dictyostelium, as well as in heterologous cells from lower to higher eukaryotes.

Biosynthesis of Camalexin from Tryptophan Pathway Intermediates in Cell-Suspension Cultures of Arabidopsis1

Camalexin (3-thiazol-2′-yl-indole) is the principal phytoalexin that accumulates in Arabidopsis after infection by fungi or bacteria. Camalexin accumulation was detectable in Arabidopsis cell-suspension cultures 3 to 5 h after inoculation with Cochliobolus carbonum (Race 1), and then increased rapidly from 7 to 24 h after inoculation. Levels of radioactivity incorporated into camalexin during a 1.5-h pulse labeling with [14C]anthranilate also increased with time after fungal inoculation. The levels of radioactive incorporation into camalexin increased rapidly between 7 and 18 h after inoculation, and then decreased along with camalexin accumulation. Relatively low levels of radioactivity from [14C]anthranilate incorporated into camalexin in the noninoculated controls. Autoradiographic analysis of the accumulation of chloroform-extractable metabolites labeled with [14C]anthranilate revealed a transient increase in the incorporation of radioactivity into indole in fungus-inoculated Arabidopsis cell cultures. The time-course measurement of radioactive incorporation into camalexin during a 1.5-h pulse labeling with [14C]indole was similar to that with [14C]anthranilate. These data suggest that indole destined for camalexin synthesis is produced by a separate enzymatic reaction that does not involve tryptophan synthase.

Developmental Expression and Substrate Specificities of Alfalfa Caffeic Acid 3-O-Methyltransferase and Caffeoyl Coenzyme A 3-O-Methyltransferase in Relation to Lignification1

The biosynthesis of monolignols can potentially occur via two parallel pathways involving free acids or their coenzyme A (CoA) esters. Caffeic acid 3-O-methyltransferase (COMT) and caffeoyl CoA 3-O-methyltransferase (CCOMT) catalyze functionally identical reactions in these two pathways, resulting in the formation of mono- or dimethoxylated lignin precursors. The activities of the two enzymes increase from the first to the sixth internode in stems of alfalfa (Medicago sativa L.), preceding the deposition of lignin. Alfalfa CCOMT is highly similar at the amino acid sequence level to the CCOMT from parsley, although it contains a six-amino acid insertion near the N terminus. Transcripts encoding both COMT and CCOMT are primarily localized to vascular tissue in alfalfa stems. Alfalfa CCOMT expressed in Escherichia coli catalyzes O-methylation of caffeoyl and 5-hydroxyferuloyl CoA, with preference for caffeoyl CoA. It has low activity against the free acids. COMT expressed in E. coli is active against both caffeic and 5-hydroxyferulic acids, with preference for the latter compound. Surprisingly, very little extractable O-methyltransferase activity versus 5-hydroxyferuloyl CoA is present in alfalfa stem internodes, in which relative O-methyltransferase activity against 5-hy-droxyferulic acid increases with increasing maturity, correlating with increased lignin methoxyl content.

Effects of Oxygen on Nodule Physiology and Expression of Nodulins in Alfalfa1

Early nodulin 2 (ENOD2) transcripts and protein are specifically found in the inner cortex of legume nodules, a location that coincides with the site of a barrier to O2 diffusion. The extracellular glycoprotein that binds the monoclonal antibody MAC236 has also been localized to this site. Thus, it has been proposed that these proteins function in the regulation of nodule permeability to O2 diffusion. It would then be expected that the levels of ENOD2 mRNA/protein and MAC236 antigen would differ in nodules with different permeabilities to O2. We examined the expression of ENOD2 and other nodule-expressed genes in Rhizobium meliloti-induced alfalfa nodules grown under 8, 20, or 50% O2. Although there was a change in the amount of MAC236 glycoprotein, the levels of ENOD2 mRNA and protein did not differ significantly among nodules grown at the different [O2], suggesting that neither ENOD2 transcription nor synthesis is involved in the long-term regulation of nodule permeability. Moreover, although nodules from all treatments reduced their permeability to O2 as the partial pressure of O2 (pO2) was increased to 100%, the levels of extractable ENOD2 and MAC236 proteins did not differ from those measured at the growth pO2, further suggesting that if these proteins are involved in a short-term regulation of the diffusion barrier, they must be involved in a way that does not require increased transcription or protein synthesis.

Drought-Induced Effects on Nitrate Reductase Activity and mRNA and on the Coordination of Nitrogen and Carbon Metabolism in Maize Leaves1

Maize (Zea mays L.) plants were grown to the nine-leaf stage. Despite a saturating N supply, the youngest mature leaves (seventh position on the stem) contained little NO3− reserve. Droughted plants (deprived of nutrient solution) showed changes in foliar enzyme activities, mRNA accumulation, photosynthesis, and carbohydrate and amino acid contents. Total leaf water potential and CO2 assimilation rates, measured 3 h into the photoperiod, decreased 3 d after the onset of drought. Starch, glucose, fructose, and amino acids, but not sucrose (Suc), accumulated in the leaves of droughted plants. Maximal extractable phosphoenolpyruvate carboxylase activities increased slightly during water deficit, whereas the sensitivity of this enzyme to the inhibitor malate decreased. Maximal extractable Suc phosphate synthase activities decreased as a result of water stress, and there was an increase in the sensitivity to the inhibitor orthophosphate. A correlation between maximal extractable foliar nitrate reductase (NR) activity and the rate of CO2 assimilation was observed. The NR activation state and maximal extractable NR activity declined rapidly in response to drought. Photosynthesis and NR activity recovered rapidly when nutrient solution was restored at this point. The decrease in maximal extractable NR activity was accompanied by a decrease in NR transcripts, whereas Suc phosphate synthase and phosphoenolpyruvate carboxylase mRNAs were much less affected. The coordination of N and C metabolism is retained during drought conditions via modulation of the activities of Suc phosphate synthase and NR commensurate with the prevailing rate of photosynthesis.

Overexpression of Nitrate Reductase in Tobacco Delays Drought-Induced Decreases in Nitrate Reductase Activity and mRNA1

Transformed (cauliflower mosaic virus 35S promoter [35S]) tobacco (Nicotiana plumbaginifolia L.) plants constitutively expressing nitrate reductase (NR) and untransformed controls were subjected to drought for 5 d. Drought-induced changes in biomass accumulation and photosynthesis were comparable in both lines of plants. After 4 d of water deprivation, a large increase in the ratio of shoot dry weight to fresh weight was observed, together with a decrease in the rate of photosynthetic CO2 assimilation. Foliar sucrose increased in both lines during water stress, but hexoses increased only in leaves from untransformed controls. Foliar NO3− decreased rapidly in both lines and was halved within 2 d of the onset of water deprivation. Total foliar amino acids decreased in leaves of both lines following water deprivation. After 4 d of water deprivation no NR activity could be detected in leaves of untransformed plants, whereas about 50% of the original activity remained in the leaves of the 35S-NR transformants. NR mRNA was much more stable than NR activity. NR mRNA abundance increased in the leaves of the 35S-NR plants and remained constant in controls for the first 3 d of drought. On the 4th d, however, NR mRNA suddenly decreased in both lines. Rehydration at d 3 caused rapid recovery (within 24 h) of 35S-NR transcripts, but no recovery was observed in the controls. The phosphorylation state of the protein was unchanged by long-term drought. There was a strong correlation between maximal extractable NR activity and ambient photosynthesis in both lines. We conclude that drought first causes increased NR protein turnover and then accelerates NR mRNA turnover. Constitutive NR expression temporarily delayed drought-induced losses in NR activity. 35S-NR expression may therefore allow more rapid recovery of N assimilation following short-term water deficit.

Nuclear particles containing RNA polymerase III complexes associated with the junctional plaque protein plakophilin 2

Plakophilin 2, a member of the arm-repeat protein family, is a dual location protein that occurs both in the cytoplasmic plaques of desmosomes as an architectural component and in an extractable form in the nucleoplasm. Here we report the existence of two nuclear particles containing plakophilin 2 and the largest subunit of RNA polymerase (pol) III (RPC155), both of which colocalize and are coimmunoselected with other pol III subunits and with the transcription factor TFIIIB. We also show that plakophilin 2 is present in the pol III holoenzyme, but not the core complex, and that it binds specifically to RPC155 in vitro. We propose the existence of diverse nuclear particles in which proteins known as plaque proteins of intercellular junctions are complexed with specific nuclear proteins.

Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA.

In this report we show that yeast expressing brome mosaic virus (BMV) replication proteins 1a and 2a and replicating a BMV RNA3 derivative can be extracted to yield a template-dependent BMV RNA-dependent RNA polymerase (RdRp) able to synthesize (-)-strand RNA from BMV (+)-strand RNA templates added in vitro. This virus-specific yeast-derived RdRp mirrored the template selectivity and other characteristics of RdRp from BMV-infected plants. Equivalent extracts from yeast expressing 1a and 2a but lacking RNA3 contained normal amounts of 1a and 2a but had no RdRp activity on BMV RNAs added in vitro. To determine which RNA3 sequences were required in vivo to yield RdRp activity, we tested deletions throughout RNA3, including the 5',3', and intercistronic noncoding regions, which contain the cis-acting elements required for RNA3 replication in vivo. RdRp activity was obtained only from cells expressing 1a, 2a, and RNA3 derivatives retaining both 3' and intercistronic noncoding sequences. Strong correlation between extracted RdRp activity and BMV (-)-strand RNA accumulation in vivo was found for all RNA3 derivatives tested. Thus, extractable in vitro RdRp activity paralleled formation of a complex capable of viral RNA synthesis in vivo. The results suggest that assembly of active RdRp requires not only viral proteins but also viral RNA, either to directly contribute some nontemplate function or to recruit essential host factors into the RdRp complex and that sequences at both the 3'-terminal initiation site and distant internal sites of RNA3 templates may participate in RdRp assembly and initiation of (-)-strand synthesis.

Eficiência de fontes, dinâmica do magnésio no solo sob a cultura do café no Brasil e comparação da análise de K, Ca e Mg em solos do Arkansas-EUA seco em estufa e úmido de campo

A cultura do café no Brasil tem apresentado frequente deficiência de magnésio (Mg) limitando sua produtividade, portanto faz-se necessário o estudo de fontes que contenham Mg para essa cultura. Por outro lado, o estudo das metodologias de análise de K, Ca e Mg no solo é um outro ponto que precisa ser estudado para melhor manejo da fertilidade do solo e recomendação de adubações. Objetivou-se com o primeiro experimento avaliar a eficiência de fontes de magnésio para a cultura do café e a dinâmica deste nutriente no perfil do solo. E com o experimento desenvolvido em Arkansas-EUA, avaliar as correlações entre as concentrações de nutrientes do solo seco em estufa e úmido de campo extraídos com Mehlich-3 e 1 mol L-1 NH4OAc. Observou-se que o óxido e oxissulfato de Mg elevaram os valores de pH e CTC e diminuíram a concentração de H + Al do solo. As fontes diminuíram a disponibilidade de K e Ca, e aumentaram o Mg no solo. Na planta, óxido e sulfato de Mg proporcionaram maior concentração de Mg foliar. Apenas no segundo ano de avaliação houve aumento de produtividade do café. Os fertilizantes óxido e oxissulfato de Mg obtiveram o maior índice de eficiência agronômica em relação ao carbonato de Mg. No segundo experimento, K, Ca e Mg extraíveis com Mehlich-3 e NH4OAc foram altamente correlacionados (r2> 0,95) tanto para solo úmido de campo quanto para o seco em estufa. A relação entre as concentrações de K no solo seco em estufa e úmido de campo para Mehlich-3 e NH4OAc foram muito semelhantes e altamente correlacionados (r2 = 0,92). A secagem do solo em estufa teve efeito mínimo sobre as concentrações de Ca e reduziu a concentração de Mg tanto para Mehlich-3 quanto para NH4OAc. Entre os nutrientes estudados, a concentração de K foi a mais afetada pela secagem em estufa, necessitando de pesquisas de campo para correlacionar e calibrar novas recomendações agronômicas.

Química da matéria orgânica e pedogênese em Latossolos húmicos sob vegetação de cerrado

A matéria orgânica do solo (MOS) representa um importante reservatório de carbono (C) nos ecossistemas terrestres. O conteúdo de C estocado no solo pode ser liberado para a atmosfera na forma de CO2, com a decomposição da MOS, ou pode ser aumentado com a entrada de resíduos e retenção da MOS. Nesse sentido, é importante entender os mecanismos de estabilidade e retenção da MOS para predizer como os solos respondem a mudanças, quer sejam elas induzidas por alterações climáticas ou por práticas de manejo. Dentro dos Latossolos, classe que ocupa cerca de 32 % do território brasileiro, há aqueles que possuem horizonte A húmico hiper espesso e, portanto, com maior estoque de C. Aspectos sobre a origem, formação e preservação do horizonte A húmico destes solos em suas ocorrências em diferentes biomas ainda não foram completamente elucidados e estão estritamente ligados à fonte, dinâmica e mecanismos de preservação e distribuição da MOS no solo. O objetivo deste trabalho é entender a gênese da MO dos Latossolos húmicos que ocorrem no Bioma Cerrado, por meio da caracterização molecular pela técnica da pirólise acoplada à cromatografia gasosa e espectroscopia de massas (pirólise - CG/EM). Para isso, foram coletadas amostras dos horizontes A em dois perfis de Latossolos com horizonte A húmico (LH1, LH2) e um perfil de Latossolo com horizonte A moderado (solo de referência; LNH) situados em superfície de aplanamento adjacente à Serra do Espinhaço, no município de Grão Mogol - MG, sob clima tropical semi-úmido e vegetação de cerrado sensu strictu. Por meio da descrição morfológica dos solos em diferentes níveis de observação (campo, lupa e microscópio) procurou-se entender melhor os mecanismos de espessamento do horizonte A e a distribuição de partículas de carvão ao longo do perfil. As amostras dos horizontes foram submetidas ao fracionamento físico e extração da MOS, gerando as seguintes frações: fração leve livre (FLL); fração leve oclusa (FLO), fração extraível com NaOH (EXT) e resíduo (RES). A morfologia dos perfis evidencia a intensa e longa atividade biológica (fauna e raízes) a que esses solos foram e estão submetidos. Isso explica a abundância de microagregados e a consequente macropososidade elevada, assim como a ampla distribuição de fragmentos de carvão em todo o horizonte A, e parte do B, com dimensões milimétricas a submilimétricas, sugerindo a fragmentação destes ao longo do tempo. Foi evidenciado o maior conteúdo de carvões nos dois LHs em comparação ao LNH. A distribuição da MOS nas frações estudadas foi a mesma para os três perfis estudados: RES>EXT>FLL>FLO, que mostra a importância da fração RES para estes solos. Produtos da carbonização (Black carbon; BC: hidrocarbonetos poliaromáticos) foram mais abundantes na fração RES e FLO, no entanto, a maior diferença qualitativa entre a MOS de LHs e LNH diz respeito à abundância de BC na fração RES, que é maior em LHs do que LNH; confirmando a maior quantidade de carvões em LHs verificada na morfologia. Um índice de degradação do BC foi estabelecido com base em análise fatorial com os todas as frações estudadas e produtos poliaromáticos. Este índice, aplicado às frações EXT e RES, mostrou que a degradação do BC aumenta com a profundidade/idade, e não houve diferenças significativas entre os perfis estudados. Portanto, LHs provavelmente tem maior entrada de carvões, o que deve estar ligado a um histórico de maior incidência de incêndios ou maior abundância local de espécies arbóreas.

Impacto da diversidade bacteriana sob a degradação clorotalonil no solo manejado com biochar

A diversidade microbiana é geralmente considerada por seu papel nos principais processos do ecossistema, tais como a decomposição da matéria orgânica e ciclos biogeoquímicos. No entanto, informações sobre o impacto da diversidade em funções menores, como degradação de xenobióticos são escassas. Nós estudamos a partir da abordagem da \'diluição para extinção\', o papel da diversidade sobre a capacidade da comunidade microbiana em degradar o fungicida clorotalonil (organoclorado). Também estudamos o comportamento da comunidade bacteriana após aplicação do pesticida no solo com e sem biochar. A diversidade microbiana do solo natural foi alterada artificialmente por diluição, constituindo um gradiente de diversidade (SN > 10-1 > 10-3 > 10-6), seguido pela inoculação em amostras de solo estéril e posterior reestruturação (15 dias). Após a reestruturação da comunidade, as amostras foram manejadas com biochar (1% m/m) e tratadas com a dose de campo do CHT. O comportamento da comunidade bacteriana foi estudo por PCR-DGGE e qPCR do gene 16S rDNA através de um experimento com molécula fria (não radiomarcada). Enquanto a capacidade de degradação do CHT foi estudada por radiorespirometria (14C-CHT). Inicialmente, a comunidade de bactérias foi influenciada pelo gradiente de diversidade obtido por diluição. A separação dos grupos bacterianos se mostrou bastante similar nos três primeiros períodos pré-aplicação do CHT (SN > 10-1 - 10-3 > 10-6), enquanto que no período de 15 dias, a dinâmica de grupos foi alterada (SN > 10-1 > 10-3 - 10-6). O fungicida e o biochar não exerceram efeitos na comunidade bacteriana no tempo zero (imediatamente após a aplicação), a modificação no perfil da comunidade foi atribuído à diluição. Nos períodos de 21 e 42 dias, o perfil comunidade bacteriana apresentou forte modificação. Os grupos bacterianos se mostraram mais dispersos quando considerado somente o CHT. Embora, a análise de ANOSIM indicou não haver diferença nas amostras com e sem biochar, sugerindo que o clorotalonil foi quem mais contribuiu na dispersão dos grupos bacterianos. No período de 42 d, a comunidade apresentou resposta positiva, sendo observado aumentos no número de bandas e no índice de Shannon em todos tratamentos. Isto possivelmente, devido a menor concentração do fungicida disponível na solução do solo, diminuindo assim, os efeitos deletérios sobre a comunidade. Os dados de qPCR não apresentaram alteração no número de copias do gene 16S rDNA em todos os tratamentos. A remoção da diversidade impactou fortemente a capacidade da comunidade bacteriana de degradar o clorotalonil. Apesar da capacidade de degradar não ter sido perdida, a mínima alteração na diversidade promoveu elevada redução na taxa de mineralização do CHT. A dissipação do CHT se mostrou rápida (D50 < 1 dia) em todos os tratamentos, além disso, a formação de 14C-resíduos não extraíveis foi constituiu um dos principais mecanismos de dissipação do CHT. A partir da degradação do fungicida, foram detectados três metabólitos. Conclui-se que a modificação por diluição da diversidade bacteriana promoveu impacto negativo na mineralização do clorotalonil. E que a formação de resíduos não extraíveis consistiu no principal mecanismo de dissipação do CHT em ambos solos.