648 resultados para Crouch, Warren "Gus"


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A report on the potential to transform disadvantaged communities in Lisburn through early intervention.This feasibility study and consultation was commissioned from Barnardo's with funding from the Public Health Agency, by Resurgam Development Trust representing community and youth organisations in disadvantaged communities in the City of Lisburn, including Old Warren, Hilden, Hillhall, Tonagh, Knockmore and Lagan Valley. It involved consultations with a very wide range of community organisations, schools and professional agencies working in Lisburn. It also included research into: the needs of the target areas; the desired outcomes for children and young people; the evidence and arguments for taking an early intervention approach to the issues; the public policy context and the extent that it might support an early intervention approach; and the evidence of the potential impact of delivering particular proven programmes in the target areas of Lisburn. Researched and written by Dr Roger Courtney.

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Access to online repositories for genomic and associated "-omics" datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th-8th 2012, was therefore to provide an overview of the current status of three key Tuberculosis resources, TubercuList (tuberculist.epfl.ch), TB Database (www.tbdb.org), and Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org). Here we summarize some key updates and upcoming features in TubercuList, and provide an overview of the PATRIC site and its online tools for pathogen RNA-Seq analysis.

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Leprosy spectrum and outcome is associated with the host immune response against Mycobacterium leprae. The role of coinfections in leprosy patients may be related to a depression of cellular immunity or amplification of inflammatory responses. Leprosy remains endemic in several regions where human T cell lymphotrophic virus type 1 (HTLV-1), hepatitis B virus (HBV) or hepatitis C virus (HCV) are also endemic. We have evaluated the evidence for the possible role of these viruses in the clinical manifestations and outcomes of leprosy. HTLV-1, HBV and HCV are associated with leprosy in some regions and institutionalization is an important risk factor for these viral coinfections. Some studies show a higher prevalence of viral coinfection in lepromatous cases. Although HBV and HCV coinfection were associated with reversal reaction in one study, there is a lack of information about the consequences of viral coinfections in leprosy. It is not known whether clinical outcomes associated with leprosy, such as development of reactions or relapses could be attributed to a specific viral coinfection. Furthermore, whether the leprosy subtype may influence the progression of the viral coinfection is unknown. All of these important and intriguing questions await prospective studies to definitively establish the actual relationship between these entities.

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The number of agents that are potentially effective in the adjuvant treatment of locally advanced resectable colon cancer is increasing. Consequently, it is important to ascertain which subgroups of patients will benefit from a specific treatment. Despite more than two decades of research into the molecular genetics of colon cancer, there is a lack of prognostic and predictive molecular biomarkers with proven utility in this setting. A secondary objective of the Pan European Trials in Adjuvant Colon Cancer-3 trial, which compared irinotecan in combination with 5-fluorouracil and leucovorin in the postoperative treatment of stage III and stage II colon cancer patients, was to undertake a translational research study to assess a panel of putative prognostic and predictive markers in a large colon cancer patient cohort. The Cancer and Leukemia Group B 89803 trial, in a similar design, also investigated the use of prognostic and predictive biomarkers in this setting. In this article, the authors, who are coinvestigators from these trials and performed similar investigations of biomarker discovery in the adjuvant treatment of colon cancer, review the current status of biomarker research in this field, drawing on their experiences and considering future strategies for biomarker discovery in the postgenomic era.

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El proyecto realizado, se basa en la producción de acrilonitrilo mediante el proceso Sohio. El proceso consiste en la amonoxidación catalítica del propileno, mediante un catalizador de óxidos de metales tales como vanadio y molibdeno. Junto al acrilonitrilo se obtienen como subproductos sulfato de amonio, cianuro de hidrógeno y acetonitrilo “bruto”. Éste último es utilizado como materia prima por otras industrias. Para lograr el objetivo del proyecto, se requiere de un reactor catalítico de tipo lecho fluidizado de grandes dimensiones y por ello, se opta por duplicarlo. También se requiere un cristalizador, para la obtención de la sal de amonio, y además un conjunto de 9 columnas de separación, de las cuales dos son de absorción, cinco de rectificación convencionales y dos de rectificación especiales. Estas dos últimas columnas, son necesarias para la ruptura de los azeótropos resultantes de la interacción acrilonitriloagua y acrilonitrilo-agua, respectivamente (se tiene en una de las dos columnas, una mezcla ternaria acrilonitrilo-acetonitrilo-agua). Debido a la naturaleza de los compuestos manipulados, es estrictamente necesario disponer de unas medias de seguridad especiales en toda la planta, así como en el parque de tanques. Además, hace falta destacar que el proceso, requiere un sistema de control de notable envergadura, (alrededor de 300 señales analógicas y digitales), debido a la complejidad del tren de purificación. En el proceso se intenta optimizar, tanto el consumo de recursos (reutilización del agua generada en el reactor para su uso como absorbente en las unidades de Quench y absorción), como el consumo energético (aprovechamiento de flujos calientes para precalentar otros fríos, generación de vapor en el reactor y a lo largo del proceso con corrientes que requieren de enfriamiento de caudales elevados a altas temperaturas, generación de electricidad con una turbina de cogeneración…). A pesar de esto, no se consiguen beneficios económicos, considerándolo así económicamente inviable. Este ha sido el resultado del estudio del flujo de caja de cada año que siempre ha resultado negativo debido a los elevados costes de producción. Finalmente, se proponen posibles mejoras para hacer viable el proceso. Algunas de estas son: cambiar la materia prima por otra de menor coste (propano en vez de propileno), cambiar el catalizador por uno de conversión mayor, minimizar los costes de tratamiento de residuos reduciendo así los gastos de nueva materia prima, u optimizar el proceso incrementado el precio del inmovilizado para disminuir el coste de producción.

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Land plants need precise thermosensors to timely establish molecular defenses in anticipation of upcoming noxious heat waves. The plasma membrane-embedded cyclic nucleotide-gated Ca(2+) channels (CNGCs) can translate mild variations of membrane fluidity into an effective heat shock response, leading to the accumulation of heat shock proteins (HSP) that prevent heat damages in labile proteins and membranes. Here, we deleted by targeted mutagenesis the CNGCd gene in two Physcomitrella patens transgenic moss lines containing either the heat-inducible HSP-GUS reporter cassette or the constitutive UBI-Aequorin cassette. The stable CNGCd knockout mutation caused a hyper-thermosensitive moss phenotype, in which the heat-induced entry of apoplastic Ca(2+) and the cytosolic accumulation of GUS were triggered at lower temperatures than in wild type. The combined effects of an artificial membrane fluidizer and elevated temperatures suggested that the gene products of CNGCd and CNGCb are paralogous subunits of Ca(2+)channels acting as a sensitive proteolipid thermocouple. Depending on the rate of temperature increase, the duration and intensity of the heat priming preconditions, terrestrial plants may thus acquire an array of HSP-based thermotolerance mechanisms against upcoming, otherwise lethal, extreme heat waves.

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OBJECTIVE: Surface magnetic resonance imaging (MRI) for aortic plaque assessment is limited by the trade-off between penetration depth and signal-to-noise ratio (SNR). For imaging the deep seated aorta, a combined surface and transesophageal MRI (TEMRI) technique was developed 1) to determine the individual contribution of TEMRI and surface coils to the combined signal, 2) to measure the signal improvement of a combined surface and TEMRI over surface MRI, and 3) to assess for reproducibility of plaque dimension analysis. METHODS AND RESULTS: In 24 patients six black blood proton-density/T2-weighted fast-spin echo images were obtained using three surface and one TEMRI coil for SNR measurements. Reproducibility of plaque dimensions (combined surface and TEMRI) was measured in 10 patients. TEMRI contributed 68% of the signal in the aortic arch and descending aorta, whereas the overall signal gain using the combined technique was up to 225%. Plaque volume measurements had an intraclass correlation coefficient of as high as 0.97. CONCLUSION: Plaque volume measurements for the quantification of aortic plaque size are highly reproducible for combined surface and TEMRI. The TEMRI coil contributes considerably to the aortic MR signal. The combined surface and TEMRI approach improves aortic signal significantly as compared to surface coils alone. CONDENSED ABSTRACT: Conventional MRI aortic plaque visualization is limited by the penetration depth of MRI surface coils and may lead to suboptimal image quality with insufficient reproducibility. By combining a transesophageal MRI (TEMRI) with surface MRI coils we enhanced local and overall image SNR for improved image quality and reproducibility.

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New names proposed: Beaveriella nom. nov. for Beaveria Lane, 1970, pre-occupied by Beaveria Lee, 1965 (Trematoda, Troglotrematidae); Monnechroma nom. nov. for Xenochroma Schmidt, 1924, pre-occupied by Xenochroma Warren, 1902 (Lepidoptera, Geometridae). Consequently, the following new combinations are made: Beaveriella nacta (Lane, 1970) comb. nov., B. sagda (Monné & Martins, 1972) comb. nov., Monnechroma azurea (Demets, 1976) comb. nov., M. seabrai (Fragoso & Monné, 1989) comb. nov., M. subpulvereum (Schimidt, 1924) comb. nov., M. tibialis (Giesbert, 1987) comb. nov., and M. uniforme (Gounelle, 1911) comb. nov..

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Estudio filogenético de los géneros de Lithinini de Sudamérica Austral (Lepidoptera, Geometridae): una nueva clasificación. Se evalúa la taxonomía de la tribu Lithinini de Sudamérica Austral sobre la base de un análisis filogenético. Para el análisis se utilizó a Catophoenissa como grupo externo. Se usaron dos aproximaciones filogenéticas para evaluar las relaciones de parentesco: 1) criterio de parsimonia; e 2) inferencia bayesiana. El análisis de parsimonia se realizó a través del programa PAUP y el análisis bayesiano con cadenas de Markov y Monte Carlo a través del programa BayesPhylogenies. Los resultados generados a partir de la hipótesis filogenética permiten proponer una nueva taxonomía para los Lithinini de Sudamérica Austral. Los géneros validos son: Asestra Warren, Acauro Rindge, Calta Rindge, Euclidiodes Warren, Franciscoia Orfila y Schajovskoy, Incalvertia Bartlett-Calvert, Lacaria Orfila y Schajovskoy, Laneco Rindge, Maeandrogonaria Butler, Martindoelloia Orfila y Schajovskoy, Nucara Rindge, Odontothera Butler, Proteopharmacis Warren, Psilaspilates Butler, Rhinoligia Warren, Tanagridia Butler. Los principales cambios respecto de ordenamientos taxonómicos previos son: 1) Yalpa Rindge, es tratado como sinónimo junior de Odontothera. 2) El género Rhinoligia Warren es incorporado a los Lithinini; 3) Se reafirma que Siopla Rindge es sinónimo junior de Asestra, Yapoma Rindge y Duraglia Rindge son sinónimos de Euclidiodes Warren, mientras que Callemo Rindge y Guara Rindge son sinónimos de Tanagridia; 4) Los géneros Calta Rindge, Incalvertia Rindge, Odontothera Butler y Proteopharmacis Warren, sinonimizados por Pitkin, son redefinidos, revalidados e incorporados a la tribu Lithinini. Se describe una nueva especie para el género Franciscoia, F. ediliae Parra. Se incluye un catálogo con los géneros y especies de la tribu de la región, más las figuras de los adultos y genitalias de las principales especies.

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Las características del evento "El Niño" de 1972 fueron examinadas usando descripciones mensuales de temperaturas superficiales del mar, en el Pacífico Oriental Tropical y en la región costera del Perú; así como promedios mensuales de temperaturas de estaciones costeras del Perú y datos de temperatura y salinidad superficiales de cruceros oceanográficos. Las observaciones fueron comparadas con las de los eventos anteriores, especialmente el de 1965 y se establecieron algunas características generales del fenómeno. Se encontró una correlación negativa entre los datos de anomalías de presión atmosférica del aeropuerto de Lima y las anomalías de temperaturas superficiales frente a la costa central y norte del Perú. En marzo de 1971 se hicieron evidentes los primeros indicios del evento de 1972 y el calentamiento de la costa meridional del Perú puede haber comenzado en agosto de 1971

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First host plant records for Iridopsis hausmanni Vargas (Lepidoptera, Geometridae) in the coastal valleys of northern Chile. The trees Haplorhus peruviana Engl. and Schinus molle L. (Anacardiaceae) are mentioned as the first host plant records for the little known native moth Iridopsis hausmanni Vargas, 2007 (Lepidoptera, Geometridae, Ennominae) in the coastal valleys of the northern Chilean Atacama Desert. This is also the first record of Anacardiaceae as host plant for a Neotropical species of Iridopsis Warren, 1894.

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Summary Inorganic phosphate (Pi) is a main limiting nutrient to the growth and production yield of plants in many agro-ecosystems. Plants have evolved a series of metabolic and developmental adaptations to cope with low Pi availability. PH01 has been identified as a protein involved in the loading of Pi into the xylem of roots in Arabidopsis. In this study, the PHO1 gene family in both higher plant Arabidopsis and lower plant Physcomitrella was characterized. Additional ten PHO1 homologues in Arabidopsis and three homologues in Physcomitrella were identified. All proteins harbor a SPX tripartite domain in the N-terminal hydrophilic portion and an EXS domain in the highly conserved C-terminal hydrophobic portion. RT-PCR analysis of the Arabidopsis PHO1 genes revealed a broad pattern of expression in leaves, roots, stems, and flowers for most genes, although two genes are expressed exclusively in flowers, indicating their potential roles not only in Pi transport but also in Pi homeostasis within the Arabidopsis plant. The regulation of gene expression by different nutrient-starvations showed that some genes are strongly up-regulated by elements other than Pi, e.g. by NO3, Mg, and Zn starvation. Northern blot and RT-PCR analysis showed distinct expression patterns of the three Physcomitrella PHO1 genes. The investigation of Pi starvation effects on some Pi-deprivation responsive genes demonstrates that Physcomitrella has evolved a similar mechanism as higher plants to respond to Pi deficiency. Promoter activity analysis for the Physcomitrella PHO1 family genes using promoter-GUS fusions revealed their expression in protonemata and gametophores but at different levels and with different patterns, suggesting these genes may play distinct roles in Pi transport and/or Pi homeostasis in the moss plant. Single knockout mutants of the three genes were generated by gene targeting and one of them displayed a reduced Pi content in the protonemata under Pi starvation. The evolution of the PHO1 family in land plants was also discussed. Together, these findings indicate that the PHO1 family genes, present in a broad range of plant species from lower plants to flowering plants, play important roles in Pi transport and homeostasis. Résumé Le phosphate inorganique (Pi) est un nutriment essentiel à la croissance des plantes et au rendement de la production végétale. Dans beaucoup d'agro-écosystèmes, ce nutriment est limitant. Les plantes ont développé des adaptations métaboliques et développementales pour palier à la faible disponibilité du Pi. Il a été démontré que la protéine PHOI est indispensable au transfert du Pi dans le xylème des racines d' Arabidopsis. Cette étude porte sur la famille de gènes définie par PHO1 ; ceci, dans deux organismes modèles : la plante Arabidopsis pour les végétaux supérieurs, et la mousse Physcomitrella pour les végétaux inférieurs. Dix homologues à PHOI dans Arabidopsis et trois homologues dans Physcomitrella ont été identifiés. Toutes les protéines encodées présentent un domaine tripartite SPX dans leur partie N terminale hydrophile et un domaine EXS dans la partie C terminale hydrophobe hautement conservée d'entre eux. L'analyse par RT-PCR de l'expression des gènes PHO1 dans Arabidopsis révèle une expression ectopique pour la plupart, à l'exception de deux gènes dont l'expression est uniquement florale ; ceci suggère l'implication de cette famille non seulement dans le transport mais aussi dans l'homéostasie du Pi dans Arabidopsis. L'observation de l'expression de ces gènes en fonction de l'absence de différents nutriments montre que certains gènes sont fortement régulés lors de carences en NO3, Mg et Zn. L'analyse par northern blot et RT-PCR met en évidence des profils d'expression distincts pour les trois gènes de Physcomitrella. Les effets de la carence en Pi sur Physcomitrella ont été étudiés par le biais de gènes dépendants connus pour Arabidopsis, les résultats suggèrent un mode de réponse à cette carence conservé entre les végétaux inférieurs et supérieurs. La localisation tissulaire de l'expression de la famille PHO1 dans la mousse a été étudiée au moyen du gène rapporteur GUS fusionné aux différents promoteurs. Ceci a révélé leur expression dans les protonemata et les gametophores, mais à des intensités et avec des profils différents, ce qui suggère des implications distinctes dans le transport et/ou l'homéostasie du Pi dans la mousse. Des simples mutants knockout ont été générés pour chaque gène de mousse ; l'un d'eux présente une diminution du contenu protonemal en Pi lorsque soumis à une carence en Pi. L'évolution de la famille PHO1 dans les plantes terrestres est également discutée. Ensemble, ces résultats indiquent que les gènes de la famille PHO1 sont présents dans une large gamme de plantes allant des végétaux inférieurs aux supérieurs, et cette étude démontre que leur conservation se justifie potentiellement par le fait qu'ils sont probablement impliqués dans des mécanismes conservés de transport et d'homéostasie du Pi.

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Arabidopsis thaliana contains two genes encoding farnesyl diphosphate (FPP) synthase (FPS), the prenyl diphoshate synthase that catalyzes the synthesis of FPP from isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In this study, we provide evidence that the two Arabidopsis short FPS isozymes FPS1S and FPS2 localize to the cytosol. Both enzymes were expressed in E. coli, purified and biochemically characterized. Despite FPS1S and FPS2 share more than 90% amino acid sequence identity, FPS2 was found to be more efficient as a catalyst, more sensitive to the inhibitory effect of NaCl, and more resistant to thermal inactivation than FPS1S. Homology modelling for FPS1S and FPS2 and analysis of the amino acid differences between the two enzymes revealed an increase in surface polarity and a greater capacity to form surface salt bridges of FPS2 compared to FPS1S. These factors most likely account for the enhanced thermostability of FPS2. Expression analysis of FPS::GUS genes in seeds showed that FPS1 and FPS2 display complementary patterns of expression particularly at late stages of seed development, which suggests that Arabidopsis seeds have two spatially segregated sources of FPP. Functional complementation studies of the Arabidopsis fps2 knockout mutant seed phenotypes demonstrated that under normal conditions FPS1S and FPS2 are functionally interchangeable. A putative role for FPS2 in maintaining seed germination capacity under adverse environmental conditions is discussed.

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La mousse haplobiontique Physcomitrella patens est utilisée comme système génétique modèle pour l'étude du développement des plantes. Cependant, l'absence d'un protocole efficace de transformation a constitué jusqu'à présent un gros désavantage méthodologique pour le développement futur de ce système expérimental. Les résultats présentés dans le premier chapitre relatent la mise au point d'un protocole de transformation basé sur la technique de transfert direct de gènes dans des protoplastes par précipitation au PEG. Un essai d'expression transitoire de gènes a été mis au point. Ce protocole a été adapté afin de permettre l'introduction in vivo d'anticorps dans des protoplastes. Le protocole modifié permet d'introduire simultanément du DNA et des IgG dans les cellules, et nous avons démontré que ces anticorps peuvent inactiver spécifiquement le produit d'un gène co-introduit (GUS), ainsi que certaines protéines impliquées dans des processus cellulaires (tubuline). Cet essai, baptisé "essai transitoire d'immuno-inactivation in vivo", devrait être directement applicable à d'autres protoplastes végétaux, et permettre l'élaboration de nouvelles stratégies dans l'étude de processus cellulaires. Le second chapitre est consacré aux expériences de transformation de la mousse avec des gènes conférant une résistance à des antibiotiques. Nos résultats démontrent que l'intégration de gènes de résistance dans le génome de P. patens est possible, mais que cet événement est rare. Il s'agit là néanmoins de la première démonstration d'une transformation génétique réussie de cet organisme. L'introduction de gènes de résistance aux antibiotiques dans les protoplastes de P. patens génère à haute fréquence des clones résistants instables. Deux classes de clones instables ont été identifiés. La caractérisation phénotypique, génétique et moléculaire de ces clones suggère fortement que les séquences transformantes sont concaténées pour former des structures de haut poids moléculaire, et que ces structures sont efficacement répliquées et maintenues dans les cellules résistantes en tant qu'éléments génétiques extrachromosomaux. Ce type de transformation nous permet d'envisager des expériences permettant l'identification des séquences génomiques impliquées dans la replication de l'ADN de mousse. Plusieurs lignées transgéniques ont été retransformées avec des plasmides portant des séquences homologues aux séquences intégrées dans le génome, mais conférant une résistance à un autre antibiotique. Les résultats présentés dans le troisième chapitre montrent que les fréquences de transformation intégrative dans les lignées transgéniques sont 10 fois plus élevées que dans la lignée sauvage, et que cette augmentation est associée à une coségrégation des gènes de résistance dans la plupart des clones testés. Ces résultats génétiques indiquent que l'intégration de séquences d'ADN étranger dans le génome de P. patens a lieu en moyenne 10 fois plus fréquemment par recombinaison homologue que par intégration aléatoire. Ce rapport homologue/aléatoire est 10000 fois supérieur aux rapports obtenus avec d'autres plantes, et fournit l'outil indispensable à la réalisation d'expériences de génétique inverse dans cet organisme à haplophase dominante. THESIS SUMMARY The moss Physcomitrella patens is used as a model genetic system to study plant development, taking advantage of the fact that the haploid gametophyte dominates in its life cycle. But further development of this model system was hampered by the lack of a protocol allowing the genetic transformation of this plant. We have developed a transformation protocol based on PEG-mediated direct gene transfer to protoplasts. Our data demonstrate that this procedure leads to the establishment of an efficient transient gene expression assay. A slightly modified protocol has been developed allowing the in vivo introduction of antibodies in moss protoplasts. Both DNA and IgGs can be loaded simultaneously, and specific antibodies can immunodeplete the product of an expression cassette (GUS) as well as proteins involved in cellular processes (tubulins). This assay, named transient in vivo immunodepletion assay, should be applicable to other plant protoplasts, and offers new approaches to study cellular processes. Transformations have been performed with bacterial plasmids carrying antibiotic resistance expression cassette. Our data demonstrate that integrative transformation occurs, but at low frequencies. This is the first demonstration of a successful genetic transformation of mosses. Resistant unstable colonies are recovered at high frequencies following transformation, and two different classes of unstable clones have been identified. Phenotypical, genetic and molecular characterisation of these clones strongly suggests that bacterial plasmids are concatenated to form high molecular arrays which are efficiently replicated and maintained as extrachromosomal elements in the resistant cells. Replicative transformation in P. patens should allow the design of experiments aimed at the identification of genomic sequences involved in moss DNA replication. Transgenic strains have been retransformed with bacterial plasmids carrying sequences homologous to the integrated transloci, but conferring resistance to another antibiotic. Our results demonstrate an order of magnitude increase of integrative transformation frequencies in transgenic strains as compared to wild-type, associated with cosegregation of the resistance genes in most of these double resistant transgenic strains. These observations provide strong genetic evidence that gene targeting occurs about ten times more often than random integration in the genome of P. patens. Such ratio of targeted to random integration is about 10 000 times higher than previous reports of gene targeting in plants, and provides the essential requirement for the development of efficient reverse genetics in the haplodiplobiontic P. patens.

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The ability to express tightly controlled amounts of endogenous and recombinant proteins in plant cells is an essential tool for research and biotechnology. Here, the inducibility of the soybean heat-shock Gmhsp17.3B promoter was addressed in the moss Physcomitrella patens, using beta-glucuronidase (GUS) and an F-actin marker (GFP-talin) as reporter proteins. In stably transformed moss lines, Gmhsp17.3B-driven GUS expression was extremely low at 25 degrees C. In contrast, a short non-damaging heat-treatment at 38 degrees C rapidly induced reporter expression over three orders of magnitude, enabling GUS accumulation and the labelling of F-actin cytoskeleton in all cell types and tissues. Induction levels were tightly proportional to the temperature and duration of the heat treatment, allowing fine-tuning of protein expression. Repeated heating/cooling cycles led to the massive GUS accumulation, up to 2.3% of the total soluble proteins. The anti-inflammatory drug acetyl salicylic acid (ASA) and the membrane-fluidiser benzyl alcohol (BA) also induced GUS expression at 25 degrees C, allowing the production of recombinant proteins without heat-treatment. The Gmhsp17.3B promoter thus provides a reliable versatile conditional promoter for the controlled expression of recombinant proteins in the moss P. patens.