The E(NK) model: extending the NK model to incorporate gene-by-environment interactions and epistasis for diploid genomes

The haploid NK model developed by Kauffman can be extended to diploid genomes and to incorporate gene-by-environment interaction effects in combination with epistasis. To provide the flexibility to include a wide range of forms of gene-by-environment interactions, a target population of environment types (TPE) is defined. The TPE consists of a set of E different environment types, each with their own frequency of occurrence. Each environment type conditions a different NK gene network structure or series of gene effects for a given network structure, providing the framework for defining gene-by-environment interactions. Thus, different NK models can be partially or completely nested within the E environment types of a TPE, giving rise to the E(NK) model for a biological system. With this model it is possible to examine how populations of genotypes evolve in context with properties of the environment that influence the contributions of genes to the fitness values of genotypes. We are using the E(NK) model to investigate how both epistasis and gene-by-environment interactions influence the genetic improvement of quantitative traits by plant breeding strategies applied to agricultural systems. © 2002 Wiley Periodicals, Inc.

The GP problem: quantifying gene-to-phenotype relationships

In this paper we refer to the gene-to-phenotype modeling challenge as the GP problem. Integrating information across levels of organization within a genotype-environment system is a major challenge in computational biology. However, resolving the GP problem is a fundamental requirement if we are to understand and predict phenotypes given knowledge of the genome and model dynamic properties of biological systems. Organisms are consequences of this integration, and it is a major property of biological systems that underlies the responses we observe. We discuss the E(NK) model as a framework for investigation of the GP problem and the prediction of system properties at different levels of organization. We apply this quantitative framework to an investigation of the processes involved in genetic improvement of plants for agriculture. In our analysis, N genes determine the genetic variation for a set of traits that are responsible for plant adaptation to E environment-types within a target population of environments. The N genes can interact in epistatic NK gene-networks through the way that they influence plant growth and development processes within a dynamic crop growth model. We use a sorghum crop growth model, available within the APSIM agricultural production systems simulation model, to integrate the gene-environment interactions that occur during growth and development and to predict genotype-to-phenotype relationships for a given E(NK) model. Directional selection is then applied to the population of genotypes, based on their predicted phenotypes, to simulate the dynamic aspects of genetic improvement by a plant-breeding program. The outcomes of the simulated breeding are evaluated across cycles of selection in terms of the changes in allele frequencies for the N genes and the genotypic and phenotypic values of the populations of genotypes.

James W. Gerard: His image of imperial Germany, 1913-1918

The subject of this study was a typical, if in some respects well qualified, U.S. ambassadorial appointee for his time, the early twentieth century: an attorney, judge, and politician who served competently in his one diplomatic assignment, in Berlin, before returning to private life.—Ed.

Assessment of bioelectrical impedance analysis for the prediction of total body water in cystic fibrosis

The aim of this study was to compare the measurement of total body water (TBW) by deuterium ((H2O)-H-2) dilution and bioelectrical impedance analysis (BIA) in patients with cystic fibrosis (CF) and healthy controls. Thirty-six clinically stable patients with CF (age 25.4 +/- 5.6 yrs) and 42 healthy controls (age 25.4 +/- 4.8) were recruited into this study. TBW was measured by (H2O)-H-2 dilution and predicted by BIA in patients and controls. The TBW predicted from BIA was significantly different from TBW as measured using (H2O)-H-2 in patients (P

Effects of soil water availability on water use efficiency of Eucalyptus cloeziana and Eucalyptus argophloia plants

Effects of soil water availability on transpiration efficiency (WUET), instantaneous water use efficiency (WUEi) and carbon isotope composition (delta(13)C) were investigated in 7-month-old plants of humid coastal (Gympie) and dry inland ( Hungry Hills) provenances of Eucalyptus cloeziana F. Muell. and in a dry inland provenance of E. argophloia Blakely (Chinchilla), supplied with 100 (W-100), 70 (W-70) and 50% (W-50) of their water requirements. At W-100, WUET of the three provenances were not significantly different but as available soil moisture decreased, E. argophloia produced greater biomass and demonstrated significantly higher WUET than either E. cloeziana provenance. Midday WUEi was not significantly affected by watering regime within each provenance but was lowest in E. argophloia. A decrease in soil water availability caused a consistent increase in delta(13)C values in all three provenances; however, delta(13)C values of E. argophloia in all three water regimes were significantly lower than those of E. cloeziana provenances, which did not differ significantly from each other. For all three provenances, delta(13)C was not correlated with WUEi but height and root collar diameter were negatively correlated to delta(13)C. There was little evidence of differences in delta(13)C, WUET and WUEi between E. cloeziana provenances but clear differences between E. cloeziana and E. argophloia. The high WUET, low WUEi and low delta(13)C for E. argophloia may have implications in the selection of Eucalyptus provenances for commercial forestry in low-rainfall regions.

Influência da idade na resistência natural da madeira de Eucalyptus grandis W. Hill ex. Maiden ao ataque de cupim de madeira seca (Cryptotermes brevis)

Este trabalho objetivou testar a resistência natural da madeira de Eucalyptus grandis de quatro diferentes idades (10, 14, 20 e 25 anos) ao ataque de cupins de madeira seca. As amostras foram retiradas da prancha diametral, na região próxima ao cerne mais externo, em número de seis unidades por tora, de cada uma das 16 árvores (quatro de cada idade). Cada par de amostras foi colocado em contato com 40 indivíduos, da espécie Cryptotermes brevis (cupim de madeira seca), avaliando-se cada par comparativamente com corpos-de-prova de madeira altamente suscetível ao ataque de cupins, no caso a madeira de Pinus elliottii, sob idênticas condições laboratoriais, mediante observações em intervalos periódicos. Ao término do ensaio foram registrados a porcentagem de cupins mortos e o número de furos, além do desgaste produzido por esses insetos. Verificou-se que a madeira de 10 anos foi a mais severamente atacada, com desgaste semelhante ao da testemunha. As madeiras de 14, 20 e 25 anos não diferiram estatisticamente entre si, quanto à resistência natural ao ataque de cupim de madeira seca, todas classificadas como de desgaste acentuado. A madeira de todas as idades mostrou-se altamente suscetível ao ataque de cupins, revelando a baixa resistência natural da espécie.

Hegel, Spinoza e o indivíduo : fraqueza ou fortaleza?

O presente trabalho apresenta um debate de cunho ontoteológico que envolve os autores G.W.F Hegel e Baruch Spinoza. Hegel é autor de um capítulo em uma de suas obras mais extensas, as Lições sobre a História da Filosofia, de uma crítica veemente à Spinoza, seu predecessor a quem, por outro lado, deve uma declarada estima. Por essa razão, buscou-se balizar as posições de ambos os autores no tocante à relação do indivíduo com o absoluto, em vias de uma redenção do sistema de Spinoza, por meio do encontro do conceito de individualidade em sua efetividade, às vistas de Hegel. Nosso trabalho dedicouse majoritariamente à uma análise metodológica crítica que levou cada um dos autores ao nosso objeto de estudo, o indivíduo.

“To laugh in tragic joy” – a linguagem poética de W. B. Yeats em Lapis Lazuli

Artigo em texto integral no link da versão do editor

James W. Carey. Uma voz que clamou por mais e melhor democracia

A notícia da morte de James W. Carey, aos 71 anos, no passado dia 23 de Maio de 2006 deixou um profundo vazio na comunidade de estudiosos da comunicação e do jornalismo. Considerado nos EUA como um dos mais influentes pensadores do último terço do século XX nesta área de estudo, embora pouco conhecido na Europa, Carey foi e será uma referência para quem, nos tempos actuais, insiste, mesmo que romanticamente, em pensar a comunicação como ritual cultural de cooperação e democracia.

Blistering of W-Ta composites at different irradiation energies

Pure tungsten and tantalum plates and tungsten-tantalum composites produced via mechanical alloying and spark plasma sintering were bombarded with He+ and D+ energetic ion beams and deuterium plasmas. The aim of this experiment is to study the effects caused by individual helium and deuterium exposures and to evidence that the modifications induced in the composites at different irradiation energies could be followed by irradiating the pristine constituent elements under the same experimental conditions, which is relevant considering the development of tailored composites for fusion applications. Higher D retentions, especially in tungsten, and superficial blistering are observed in both components after helium exposure. The blistering is magnified in the tantalum phase of composites due to its higher ductility and to water vapour production under deuterium irradiation. At lower irradiation energies the induced effects are minor. After plasma exposure, the presence of tantalum does not increase the D content in the composites. (C) 2013 Elsevier B.V. All rights reserved.