Biodiversity as an index of regime shift in the eastern Bering Sea

Data collected from an annual groundf ish survey of the eastern Bering Sea shelf from 1975 to 2002 were used to estimate biomass and biodiversity indexes for two fish guilds: f latfish and roundfish. Biomass estimates indicated that several species of f latfish (particularly rock sole, arrowtooth flounder, and f lathead sole), several large sculpins (Myoxocephalus spp.), bigmouth (Hemitripterus bolini), and skates (Bathyraja spp.) had increased. Declining species included several f latfish species and many smaller roundfish species of sculpins, eelpouts (Lycodes spp.), and sablefish (Anoplopoma fimbria). Biodiversity indexes were calculated by using biomass estimates for both guilds from 1975 through 2002 within three physical domains on the eastern Bering Sea shelf. Biodiversity trends were found to be generally declining within the roundfish guild and generally increasing within the f latfish guild and varied between inner, middle, and outer shelf domains. The trends in biodiversity indexes from this study correlated strongly with the regime shift reported for the late 1970s and 1980s.

An Index of Abundance for Coastal Species of Juvenile Sharks from the Northeast Gulf of Mexico

A fishery-independent assessment of juvenile coastal shark populations in U.S. waters of the northeast Gulf of Mexico was conducted using two methods: gillnets and longlines. Surveys were conducted monthly during April–October in two fixed sampling areas from 1996 to 1998. The Atlantic sharpnose shark, Rhizoprionodon terraenovae, and the blacktip shark, Carcharhinus limbatus, were the most common species captured with either longlines or gillnets. An additional 14 shark species were captured, and juvenile indices of abundance were developed for 8 species with gillnets and 6 species of sharks with longlines. Trends in catch-per-unit-effort were found to vary depending on species. Length-frequency information revealed that the majority of sharks captured were juveniles. Given the direct relationship between stock and recruitment for sharks, continued monitoring of juvenile abundance will aid in determining the strength of the parental stock size and for predicting future population strength.

Radiolarian flux in the Santa Barbara Basin as an index of climate variability

Annual radiolarian flux (1954-1986) extrapolated from varved Santa Barbara Basin sediments was compared to instrumental data to examine the effect of interannual climate variability. Paleo-reconstructions over large geographic areas or 10^3 years and longer typically rely on changes in species composition to signal environment or climate shifts. In the relatively short period studied, climate fluctuations were insufficient to significantly alter the assemblage, but there was considerable variability in the total flux of radiolarians. This variability, greatest on 5- to 25-year time scales, appears to be linked to regional climate variability. Total flux correlates to regional California sea surface temperature and the composite of sea level pressure over the Northern Hemisphere for years of high radiolarian flux resembles positive PNA circulation.

Some aspects on growth and condition index of Saccostrea cucullata (Born), Cerithium rubus (Desh) and Tellina angulata Gmelin from Bombay coast

Size variation, growth, condition index and spawning periodicities of three species of molluscs were studied for a period of 15 months from a polluted and a relatively clean marine habitat near Bombay, Maharashtra, India. Growth of Saccostrea cucullata was 1.2 times and of Cerithium rubus was 1.6 times higher in unpolluted habitat than the polluted water. Spawning was during premonsoon in S. cucullata, post monsoon in C. rubus and monsoon in Tellina angulata. Condition index and percentage edibility values were higher at less polluted stations.

Chemical changes in skin mucin as an index of early stages of spoilage in fish

Results of a preliminary investigation on the overall chemical nature of fish skin mucin in lung fish, Clarias batrachus, with special reference to water soluble low molecular weight compounds, are presented. Changes observed during room temperature spoilage have been studied with a view to present a new approach towards the assessment of freshness in fish inspection. pH of the mucin was distinctly alkaline (8.2) and remained unchanged during spoilage. Much of the nitrogen was found to be present in the glycoprotein fraction. Free amino acids and purine bases were present in appreciable quantities in the aqueous extracts which registered a significant increase after 10 hrs. Post-mortem increase in total solids was accompanied by a slight rise in protein nitrogen which may indicate tissue breakdown. Increase in TVN was also observed to occur earlier in the outside mucin as compared to the inside muscle. Presence of free sugars or sialic acid could not be confirmed nor was there any indication of cholesterol and lipoid material as stated in earlier literature.

A statistical index of growth condition in an aquaculture experiment

A simple statistical index, for evaluating the condition of growth in an aquaculture experiment and indicating the extent of effect of any plausible rival hypothesis, is presented.

Annual variations of biotic integrity in the upper Yangtze River using an adapted index of biotic integrity (IBI)

Adaptive modification and use of Karr's index of biotic integrity (IBI) for the upper Yangtze River, including 12 metrics in five categories, have typically occurred in line with the data collected by 6-year commercial fisheries investigation. These investigations were undertaken annually in four sections of the Upper Yangtze main channel between 1997 and 2002. These four monitoring sections (Yibin - YB, Hejiang - HJ, Mudong - MD, and Yichang - YC) were selected because they represent the part of the river that will be covering a 1000 kin stretch that includes the future Three Gorges Reservoir (TGR), upstream of the Three Gorges Dam (TGD), an area influenced by the construction of TGD. in addition, historical data were used to show changes in the watershed by comparison with field investigations recently. The biotic integrity of the four sections were calculated and classified into different levels annually for recognizing its spatial and temporal variations. It was observed that IBI scores were becoming lower diminishingly since 1997 in all the four sections. Because all the data were collected before the impoundment of the Three Gorges Reservoir, it is obvious that human activities, especially over-fishing, must be crucial factor instead of damming in the upper Yangtze River in that period. (C) 2008 Published by Elsevier Ltd.

Measurement of chirp parameter and modulation index of a semiconductor laser based on optical spectrum analysis

A novel and simple method for measuring the chirp parameter, frequency, and intensity modulation indexes of directly modulated lasers is proposed in a small-signal modulation scheme. A graphical approach is presented. An analytical solution to the measurement of low chirp parameters is also given. The measured results agree well with those obtained using the conventional methods.

Radiation-use efficiency and the harvest index of winter wheat at different nitrogen levels and their relationships to canopy spectral reflectance

Radiation-use efficiency (RUE, g/MJ) and the harvest index (HI, unitless) are two helpful characteristics in interpreting crop response to environmental and climatic changes. They are also increasingly important for accurate crop yield simulation, but they are affected by various environmental factors. In this study, the RUE and HI of winter wheat and their relationships to canopy spectral reflectance were investigated based on the massive field measurements of five nitrogen (N) treatments. Crop production can be separated into light interception and RUE. The results indicated that during a long period of slow growth from emergence to regreening, the effect of N on crop production mainly showed up in an increased light interception by the canopy. During the period of rapid growth from regreening to maturity, it was present in both light interception and RUE. The temporal variations of RUEAPAR (aboveground biomass produced per unit of photosynthetically active radiation absorbed by the canopy) during the period from regreening to maturity had different patterns corresponding to the N deficiency, N adequacy and N-excess conditions. Moreover, significant relationships were found between the RUEAPAR and the accumulative normalised difference vegetation index (NDVI) in the integrated season (R-2 = 0.68), between the HI and the accumulative NDVI after anthesis (R-2 = 0.89), and between the RUEgrain (ratio of grain yield to the total amount of photosynthetically active radiation absorbed by the canopy) and the accumulative NDVI of the whole season (R-2 = 0.89) and that after anthesis (R-2 = 0.94). It suggested that canopy spectral reflectance has the potential to reveal the spatial information of the RUEAPAR, HI and RUEgrain. It is hoped that this information will be useful in improving the accuracy of crop yield simulation in large areas.

Pervasive autocorrelation of the chemical index of alteration in sedimentary profiles and its palaeoenvironmental implications

The chemical index of alteration has been used widely for reconstruction of the palaeoclimate. However, the mechanisms and environmental factors controlling the chemical index of alteration of sediments are not yet fully understood. In this study, autocorrelations of the chemical index of alteration in nine sedimentary profiles, from both the land and the sea, spanning different geological times, are discussed. The sediments of these profiles have different origins (dust, fluvial or ocean sediments) and are from various climate situations and sedimentary environments. Autocorrelations of chemical index of alteration series are ubiquitously evident in all profiles. It is suggested here that autocorrelations may be caused by post-depositional changes such as persistent weathering and diagenesis. As a result, the chemical index of alteration may not reflect climatic conditions during the time of sediment deposition. This study strongly recommends the confirmation of the reliability and veracity of the chemical index of alteration before it is adopted to evaluate the weathering degree of parent rocks and to reconstruct the past climate. Significant autocorrelations in loess profiles were specifically observed, suggesting that the existing understanding of loess deposition in terms of climate conditions requires re-examination, and that previous reconstructions of rapid climate changes (for example, in centennial-millennial scales) should be treated with caution.

Diversity index of mucosal resident T lymphocyte repertoire predicts clinical prognosis in gastric cancer

© 2015 Taylor & Francis Group, LLC.A characteristic immunopathology of human cancers is the induction of tumor antigen-specific T lymphocyte responses within solid tumor tissues. Current strategies for immune monitoring focus on the quantification of the density and differentiation status of tumor-infiltrating T lymphocytes; however, properties of the TCR repertoire - including antigen specificity, clonality, as well as its prognostic significance β remain elusive. In this study, we enrolled 28 gastric cancer patients and collected tumor tissues, adjacent normal mucosal tissues, and peripheral blood samples to study the landscape and compartmentalization of these patients’ TCR β repertoire by deep sequencing analyses. Our results illustrated antigen-driven expansion within the tumor compartment and the contracted size of shared clonotypes in mucosa and peripheral blood. Most importantly, the diversity of mucosal T lymphocytes could independently predict prognosis, which strongly underscores critical roles of resident mucosal T-cells in executing post-surgery immunosurveillance against tumor relapse.