Quantification of the diversity among common bean accessions using Ward-MLM strategy

The present work aimed at evaluating the divergence among common bean accessions by their agronomic, morphological and molecular traits, based on the Ward-MLM procedure. A collection of 57 accessions from the gene bank of Universidade Federal do Espírito Santo was used in this study, from which: 31 were landraces belonging to the community Fortaleza, in the municipality of Muqui, ES, Brazil; 20 accessions were provided by Embrapa Trigo; and 6 were commercial cultivars. Five agronomic traits (plant cycle, number of seeds per pod, number of pods per plant, weight of 100 seeds, and grain yield), five morphological traits (growth habit, plant size, seed shape, seed color, and commercial group) and 16 microsatellite primers were evaluated. High genetic variability was detected considering morphological, agronomic and molecular traits in the 57 common bean accessions studied. The Ward-MLM procedure showed that the ideal number of groups was five, according to the pseudo F and pseudo t² criteria. The accessions from Andean origin had heavier seeds than others and formed a cluster. The Ward-MLM statistical procedure is a useful technique to detect genetic divergence and to cluster genotypes by simultaneously using morphological, agronomic and molecular data.

Occurrence of weeds in Cassava savanna plantations in Roraima

A phyto-sociological survey is the first step to implement integrated weed management in crops. In this study, weed occurrence was evaluated in cassava plantations in the savannah of Roraima in northern Brazil. Harvest was performed randomly 80 times in 10 crops over four seasons (January, February, March, and April 2012). The harvested plants were cut at ground level, sorted out per species, identified, quantified, and weighed on a 0.01 g precision scale. A descriptive analysis was conducted of the phyto-sociological parameters (frequency, density, abundance, total number of individuals per species, relative frequency, relative density, relative abundance and importance value index) for the collected species. A description was also made of the botanical classes, families, species, type of propagation, life cycle, growth habit, total number of species and dry weight ha-1. The community in the surveyed area was considered to have a heterogeneous composition, comprising 27 species. The species presenting the highest density per hectare were Digitaria sanguinalis (210,500), Brachiaria brizantha (111,000), Brachiaria decumbens (86,500) and Brachiaria humidicola (69,000). Digitaria sanguinalis had the highest relative density (28.08), relative abundance (26.16) and importance value index (65,34). Most weeds had herbaceous growth habit.

Association mapping of partitioning loci in barley

Background: Association mapping, initially developed in human disease genetics, is now being applied to plant species. The model species Arabidopsis provided some of the first examples of association mapping in plants, identifying previously cloned flowering time genes, despite high population sub-structure. More recently, association genetics has been applied to barley, where breeding activity has resulted in a high degree of population sub-structure. A major genotypic division within barley is that between winter- and spring-sown varieties, which differ in their requirement for vernalization to promote subsequent flowering. To date, all attempts to validate association genetics in barley by identifying major flowering time loci that control vernalization requirement (VRN-H1 and VRN-H2) have failed. Here, we validate the use of association genetics in barley by identifying VRN-H1 and VRN-H2, despite their prominent role in determining population sub-structure. Results: By taking barley as a typical inbreeding crop, and seasonal growth habit as a major partitioning phenotype, we develop an association mapping approach which successfully identifies VRN-H1 and VRN-H2, the underlying loci largely responsible for this agronomic division. We find a combination of Structured Association followed by Genomic Control to correct for population structure and inflation of the test statistic, resolved significant associations only with VRN-H1 and the VRN-H2 candidate genes, as well as two genes closely linked to VRN-H1 (HvCSFs1 and HvPHYC). Conclusion: We show that, after employing appropriate statistical methods to correct for population sub-structure, the genome-wide partitioning effect of allelic status at VRN-H1 and VRN-H2 does not result in the high levels of spurious association expected to occur in highly structured samples. Furthermore, we demonstrate that both VRN-H1 and the candidate VRN-H2 genes can be identified using association mapping. Discrimination between intragenic VRN-H1 markers was achieved, indicating that candidate causative polymorphisms may be discerned and prioritised within a larger set of positive associations. This proof of concept study demonstrates the feasibility of association mapping in barley, even within highly structured populations. A major advantage of this method is that it does not require large numbers of genome-wide markers, and is therefore suitable for fine mapping and candidate gene evaluation, especially in species for which large numbers of genetic markers are either unavailable or too costly.

Haplotype analysis of vernalization loci in European barley germplasm reveals novel VRN-H1 alleles and a predominant winter VRN-H1/VRN-H2 multi-locus haplotype

In barley, variation in the requirement for vernalization (an extended period of low temperature before flowering can occur) is determined by the VRN-H1, -H2 and -H3 loci. In European cultivated germplasm, most variation in vernalization requirement is accounted for by alleles at VRN-H1 and VRN-H2 only, but the range of allelic variation is largely unexplored. Here we characterise VRN-H1 and VRN-H2 haplotypes in 429 varieties representing a large portion of the acreage sown to barley in Western Europe over the last 60 years. Analysis of genotype, intron I sequencing data and growth habit tests identified three novel VRN-H1 alleles and determined the most frequent VRN-H1 intron I rearrangements. Combined analysis of VRN-H1 and VRN-H2 alleles resulted in the classification of seventeen VRN-H1/VRN-H2 multi-locus haplotypes, three of which account for 79% of varieties. The molecular markers employed here represent powerful diagnostic tools for prediction of growth habit and assessment of varietal purity. These markers will also allow development of germplasm to test the behaviour of individual alleles with the aim of understanding the relationship between allelic variation and adaptation to specific agri-environments.

Engineering a plant community to deliver multiple ecosystem services

The sustainable delivery of multiple ecosystem services requires the management of functionally diverse biological communities. In an agricultural context, an emphasis on food production has often led to a loss of biodiversity to the detriment of other ecosystem services such as the maintenance of soil health and pest regulation. In scenarios where multiple species can be grown together, it may be possible to better balance environmental and agronomic services through the targeted selection of companion species. We used the case study of legume-based cover crops to engineer a plant community that delivered the optimal balance of six ecosystem services: early productivity, regrowth following mowing, weed suppression, support of invertebrates, soil fertility building (measured as yield of following crop), and conservation of nutrients in the soil. An experimental species pool of 12 cultivated legume species was screened for a range of functional traits and ecosystem services at five sites across a geographical gradient in the United Kingdom. All possible species combinations were then analyzed, using a process-based model of plant competition, to identify the community that delivered the best balance of services at each site. In our system, low to intermediate levels of species richness (one to four species) that exploited functional contrasts in growth habit and phenology were identified as being optimal. The optimal solution was determined largely by the number of species and functional diversity represented by the starting species pool, emphasizing the importance of the initial selection of species for the screening experiments. The approach of using relationships between functional traits and ecosystem services to design multifunctional biological communities has the potential to inform the design of agricultural systems that better balance agronomic and environmental services and meet the current objective of European agricultural policy to maintain viable food production in the context of the sustainable management of natural resources.

A framework for designing multi-functional cover crops

Cover crops are sown to provide a number of ecosystem services including nutrient management, mitigation of diffuse pollution, improving soil structure and organic matter content, weed suppression, nitrogen fixation and provision of resources for biodiversity. Although the decision to sow a cover crop may be driven by a desire to achieve just one of these objectives, the diversity of cover crops species and mixtures available means that there is potential to combine a number of ecosystem services within the same crop and growing season. Designing multi-functional cover crops would potentially help to reconcile the often conflicting agronomic and environmental agendas and contribute to the optimal use of land. We present a framework for integrating multiple ecosystem services delivered by cover crops that aims to design a mixture of species with complementary growth habit and functionality. The optimal number and identity of species will depend on the services included in the analysis, the functional space represented by the available species pool and the community dynamics of the crop in terms of dominance and co-existence. Experience from a project that applied the framework to fertility building leys in organic systems demonstrated its potential and emphasised the importance of the initial choice of species to include in the analysis

Análise do Crescimento de Hyptis suaveolens

O crescimento de H. suaveolens foi estudado em casa de vegetação, no delineamento experimental inteiramente casualizado, com quatro repetições. As plantas cresceram em vasos com capacidade de cinco litros, preenchidos com areia e irrigados com solução nutritiva, diariamente. Os atributos de crescimento das plantas foram avaliados dos 20 até os 160 dias após a emergência (DAE) da planta daninha, em intervalos regulares de 14 dias. A planta atingiu o máximo estimado de biomassa seca acumulada aos 145 DAE. A partir da emergência, até 104 dias, as folhas apresentaram maior participação no acúmulo de biomassa seca total da planta; posteriormente, os caules passaram a deter maior proporção dessa característica. A taxa de assimilação líquida foi crescente do início do ciclo até a época estimada de 71 DAE, decrescendo a seguir, provavelmente devido ao auto-sombreamento das folhas. A análise do crescimento indicou que H. suaveolens pode apresentar alta capacidade competitiva, podendo ser considerada planta infestante de crescimento tardio, quando presente nas culturas anuais de verão.

Avaliação de cultivares de amendoim para resistência a Spodoptera frugiperda

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Não-preferência para oviposição e alimentação de Spodoptera frugiperda (J. E. Smith, 1797) (Lepidoptera: Noctuidae) por cultivares de amendoim.

This study aimed to select peanut cultivars resistant to Spodoptera frugiperda, selecting non-oviposition and non-feeding preference in choice and no-choice tests. Peanut cultivars with upright growth habit (IAC 5, IAC 8112, IAC 22 and IAC Tatu ST) and runner growth habit (IAC 503, IAC 505, IAC 147, IAC 125, IAC Caiapo and IAC Runner 886) were evaluated. Tests of non-oviposition preference were conducted with newly emerged adults. Adults were fed a 10% honey solution, remaining in cages for 4 days until the start of the evaluations. The evaluations consisted of quantifying the number of eggs and egg masses, followed by calculating the number of eggs per egg mass. To perform non-feeding preference tests, leaf discs from different peanut cultivars were placed in disposable Petri dishes followed by releasing of a third-instar caterpillar for each cultivar. The attractiveness at 1, 5; 10, 15, 30, 60, 120, 360, 720 and 1,440 minutes was evaluated by counting the caterpillars that were feeding on cultivars. The leaf area consumed was evaluated at the end of the experiment for each cultivar. In the tests of non-oviposition and non-feeding preference, with choice or no-choice, none of the cultivars of the upright growth and runner growth habit influenced the oviposition or food of S. frugiperda. Thus, the peanut cultivars showed no resistance of the non-feeding and non-oviposition types.

Índice de cobertura vegetal e sua modelagem para cultivares de soja no sul de Minas Gerais

A cobertura vegetal do solo é decisiva para redução dos efeitos erosivos do impacto direto das gotas de chuva na superfície do solo. Desta forma, objetivou-se com este estudo determinar o índice de cobertura vegetal (CV) e desenvolver modelos para sua estimativa para a cultura da soja, usando os atributos climáticos no período de chuvas intensas no Sul de Minas Gerais. As determinações da CV foram feitas semanalmente, na área experimental do Departamento de Ciência do Solo, Universidade Federal de Lavras (UFLA), no período de novembro de 1999 a maio de 2000, em 28 cultivares de soja com potencial para cultivo nesta região. Para avaliação da cobertura vegetal foi utilizada a metodologia descrita por Stocking (1988). Na modelagem procurou-se relacionar a CV com os valores acumulados dos seguintes atributos climáticos: temperatura média (Tmed), precipitação (PREC) e umidade relativa do ar (UR). Os valores de cobertura vegetal apresentaram uma amplitude de variação de 56 a 83%, sendo BR 162, LO 12 L e M. Soy 108 as cultivares mais eficientes e FT Abyara e Tucano as menos eficientes. O hábito diferencial de crescimento das cultivares ajuda a explicar esse comportamento. O modelo ajustado adequado para estimativa da CV foi: CV = 116589,976 + 0,422 . Tmed + 0,132 . PREC - 0,095 . UR + 0,000024 . Tmed², R² = 0,99 (P < 0,01). A determinação da CV nas diferentes fases de desenvolvimento da cultura é de grande importância, uma vez que seu estabelecimento coincide com o período de maior potencial erosivo das chuvas na região estudada.

Balanço de radiação e fluxo de calor no solo em ambiente natural e protegido cultivado com pepineiro

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

POTASSIUM FERTILIZATION, ROOT MORPHOLOGY AND POTASSIUM ABSORPTION BY SOYBEAN

A greenhouse experiment studied the effect of potassium fertilization on soybean (Glycine max L. Merrill) root morphology and on K absorption by six soybean cultivars of different maturation groups and growth habits. The Plants were grown up to 70 days after plant emergence, in pots containing 6.0 kg of soil. In the absence of K, no significant difference in K absorption was observed among the cultivars or in root length and surface, but root mean radius was correlated to K absorption. Differences in K absorption were not associated with root characteristics in the presence of K fertilization. Physiological adjustments in K uptake, as well as K availability in the soil, were more important in soybean nutrition than were morphological adjustments in the root system. The results were not associated with plant growth habit or with maturation group.

Diferentes resposta de cutivares de soja e potássio

Soybean (Glycine max (L.) Merrill) is known to have a high ability as a potassium extractor, and different cultivars show different potassium requirements. An experiment was run to study the potassium nutrition of soybean as related to plant characteristics. Six soybean cultivars (FT-2, Bossier, IAC-11, IAC-17, IAC-18 and IAC-19) were grown in 6 kg pots filled with the topsoil of a Dark Red Latosol (sandy loam), either with and without K fertilization. The plants were harvested 70 days after emergence. Soybean response to potassium was not related to growth habit or group of maturation. There was a different response to K. The cultivars IAC-18 and FT-2 were less tolerant to K deficiency. Potassium deficiency in the leaves was not related to top dry matter production. With K fertilization soybean plants showed small root volume and higher ratio canopy/root. With high K in soil, all of the cultivars showed higher nodulation.

Seleção de genótipos resistentes de amendoinzeiro a Anticarsia gemmatalis Hübner (Lepidoptera: Noctuidae) com base em análises multivariadas

The velvetbean caterpillar Anticarsia gemmatalis Hübner attacks peanut leaves, and the use of resistant varieties has directly contributed to ecological and economic aspects of pest control. The aim of this work was to select resistant peanut genotypes to A. gemmatalis using cluster analyses (dendogram obtained by Ward's methods and K-means) and Principal Components analysis for data interpretation. The evaluated genotypes were: IAC 5, IAC 8112, IAC 22 and IAC Tatu ST with upright growth habit, and IAC 147, IAC 125, IAC Caiapó and IAC Runner 886 with runner growth habit, and soybean genotype BR 16 as a susceptible control. The biological parameters: leaf consumption, larval (4o instar) and pupal (24h old) weight, larval and pupal development time and adult longevity were evaluated at laboratory conditions. The genotypes IAC 147 and IAC Runner 886 were resistant to A. gemmatalis in both cluster tests, grouping apart from most of the other genotypes. Both dendrogram and K-means methods provided satisfactory biological explanation, and they can be complementary used together with Principal Component and vice-versa. These results suggest that cluster analyses may be an important statistical tool in the selection of host plant resistance.

Resistência de cultivares de amendoim de hábitos de crescimento ereto e rasteiro a Spodoptera frugiperda, em laboratório

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)