Conservation and sustainable use of crop wild relatives

Conservation of crop wild relatives (CWRs) is a complex interdisciplinary process that is being addressed by various national and international initiatives, including two Global Environment Facility projects ('In situ Conservation of Crop Wild Relatives through Enhanced Information Management and Field Application' and 'Design, Testing and Evaluation of Best Practices for in situ Conservation of Economically Important Wild Species'), the European Community-funded project 'European Crop Wild Relative Diversity Assessment and Conservation Forum (PGR Forum)' and the European 'In situ and On Farm Network'. The key issues that have arisen are: (1) the definition of what constitutes a CWR, (2) the need for national and regional information systems and a global system, (3) development and application of priority-determining mechanisms, (4) the incorporation of the conservation of CWRs into existing national, regional and international PGR programmes, (5) assessment of the effectiveness of conservation actions, (6) awareness of the importance of CWRs in agricultural development at local, national and international levels both for the scientific and lay communities and (7) policy development and legal framework. The above issues are illustrated by work on the conservation of a group of legumes known as grasspea chicklings, vetchlings, and horticultural ornamental peas (Lathyrus spp.) in their European and Mediterranean centre of diversity. (c) 2007 Published by Elsevier B.V.

Genetic relationships among Arachis hypogaea L. (AABB) and diploid Arachis species with AA and BB genomes

The cultivated peanut (Arachis hypogaea L.) is an allotetraploid, with two types of genomes, classified as AA and BB, according to cytogenetic characters. Similar genomes to those of A. hypogaea are found in the wild diploid species of section Arachis, which is one of the nine Arachis sections. The wild species have resistances to pests and diseases that affect the cultivated peanut and are a potential source of genes to increase the resistance levels in peanut. The aim of this study was to analyze the genetic variability within AA and BB genome species and to evaluate how they are related to each other and to A. hypogaea, using RAPD markers. Eighty-seven polymorphic bands amplified by ten 10-mer primers were analyzed. The species were divided into two major groups, and the AA and the BB genome species were, in general, separated from each other. The results showed that high variation is available within species that have genomes similar to the AA and the BB genomes of A. hypogaea.

RFLP analysis of genetic variation in species of section Arachis, genus Arachis (Leguminosae)

Four A-genome species of the genus Arachis ( A. cardenasii, A. correntina, A. duranensis, A. kempff-mercadoi), three B genomes species ( A. batizocoi, A. ipaensis and A. magna), the AABB allotetraploid A. hypogaea (cultivated peanut) and introgression lines resulting from a cross between A. hypogaea and A. cardenasii were analyzed by RFLP. The A genome species (cytologically characterized by the presence of a small chromosome pair 'A') were closely similar to each other and shared a large number of restriction fragments. In contrast, the B genome species differed more from one another and shared few fragments. The results of this study indicate that the absence of the small chromosome pair is not a good criterion for grouping species of section Arachis as B genome species, since their genome might be quite distinct from the B genome of A. hypogaea. The lowest genetic variation was detected within accessions of A. duranensis (17 accessions), followed by A. batizocoi (4 accessions) and A. cardenasii (9 plants of accession GKP 10017). The high level of genetic variation found in A. cardenasii might indicate that not all accessions of wild species of Arachis are autogamous, as reported for A. hypogaea.

Transferability and use of microsatellite markers for the genetic analysis of the germplasm of some Arachis section species of the genus Arachis

The Arachis section is the most important of the nine sections of the genus Arachis because it includes the cultivated peanut, Arachis hypogaea. The genetic improvement of A. hypogaea using wild relatives is at an early stage of development in spite of their potential as sources of genes, including those for disease and pests resistance, that are not found in the A. hypogaea primary gene pool. Section Arachis species germplasm has been collected and maintained in gene banks and its use and effective conservation depends on our knowledge of the genetic variability contained in this material. Microsatellites are routinely used for the analysis of genetic variability because they are highly polymorphic and codominant. The objective of this study was to evaluate the transferability of microsatellite primers and the assay of genetic variability between and within the germplasm of some species of the Arachis section. Fourteen microsatellite loci developed for three different species of Arachis were analyzed and 11 (78%) were found to be polymorphic. All loci had transferability to all the species analyzed. The polymorphic loci were very informative, with expected heterozygosity per locus ranging from 0.70 to 0.94. In general, the germplasm analyzed showed wide genetic variation. © 2006 Sociedade Brasileira de Genética.

Occurrence of Enneothrips flavens moulton and Stegasta bosquella (chambers) and its effects on agronomic traits of wild Arachis accessions

Some wild species of the genus Arachis have demonstrated potential for improvement of peanuts. This work was performed to evaluate the occurrence and symptoms of Enneothrips flavens and Stegasta bosquella and its effects on agronomic traits of wild Arachis accessions. Nine accessions of wild Arachis species and a commercial A. hypogaea variety were studied in a split plot statistical scheme with a completely randomized block design and four replications. The main plots consisted of plants sprayed or not sprayed for insect control, while the subplots comprised the peanut accessions. Accessions GKP10017 (A. cardenasii) and V7639 (A. kuhlmannii) showed the lowest percentages of leaflets with E. flavens and S. bosquella. Accessions V9912, V7639 and V8979 (all three A. kuhlmannii) and V13250 (A. kempff-mercadoi) showed the lowest responses to insecticide application among the various plant traits evaluated. These accessions are of interest for further studies to identify mechanisms of resistance, to be used in breeding programs for resistance to these insects.

Molecular identification of trypanosomatids in wild animals

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Knowledge and use of wild edible plants in rural communities along Paraguay River, Pantanal, Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Serological evidence of Infection by Leishmania (Leishmania) infantum (Synonym: Leishmania (Leishmania) chagasi) in free-ranging wild mammals in a nonendemic region of the state of São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers.

Many major weeds rely upon vegetative dispersal by rhizomes and seed dispersal by "shattering" of the mature inflorescence. We report molecular analysis of these traits in a cross between cultivated and wild species of Sorghum that are the probable progenitors of the major weed "johnsongrass." By restriction fragment length polymorphism mapping, variation in the number of rhizomes producing above-ground shoots was associated with three quantitative trait loci (QTLs). Variation in regrowth (ratooning) after overwintering was associated with QTLs accounting for additional rhizomatous growth and with QTLs influencing tillering. Vegetative buds that become rhizomes are similar to those that become tillers--one QTL appears to influence the number of such vegetative buds available, and additional independent genes determine whether individual buds differentiate into tillers or rhizomes. DNA markers described herein facilitate cloning of genes associated with weediness, comparative study of rhizomatousness in other Poaceae, and assessment of gene flow between cultivated and weedy sorghums--a risk that constrains improvement of sorghum through biotechnology. Cloning of "weediness" genes may create opportunities for plant growth regulation, in suppressing propagation of weeds and enhancing productivity of major forage, turf, and "ratoon" crops.

Gamma radiation preserves chemical and bioactive properties of Boletus edulis wild mushrooms

Boletus edulis Bull: Fr. is an edible mushroom quite appreciated for its organoleptic and nutritional properties. However, the seasonality and perishability cause some difficulties in its distribution and marketing in fresh form; losses associated with this type of food during marketing can reach 40% [1]. Irradiation is recognized as a safe and effective method for food preservation, being used worldwide to increase shelf life of fresh and dehydrated products (e.g. fruits, vegetables and spices) [2]. In particular, gamma irradiation has already been applied to cultivated mushrooms (especially Agaricus, Lentinula and Pleurotus Genus) and proved to be an interesting conservation technology [3]. However, the studies with added-value wild species are scarce. In this work, the effects of gamma irradiation on chemical and antioxidant properties of wild B. edulis, were evaluated. Fruiting bodies were obtained in Trás-os-Montes, in the Northeast of Portugal, in November 2012. The irradiation was performed in experimental equipment with 60Co sources at 1 and 2 kGy. All the results were compared with nonirradiated samples (control). Macronutrients and energy value were determined following official procedures of food analysis; fatty acids were analyzed by gas-chromatography coupled to flame ionization detection (GC-FID), while sugars and tocopherols were determined by high performance liquid chromatography (HPLC) coupled to refraction index (RI) and fluorescence detectors, respectively. Antioxidant activity was evaluated in the methanolic extracts by in vitro assays measuring DPPH (1,1-diphenyl-2-picrylhydrazyl) radical scavenging activity, reducing power, inhibition of β- carotene bleaching and inhibition of lipid peroxidation using thiobarbituric acid reactive substances (TBARS) assay. Total phenolics were also determined by the Folin-Ciocalteu assay. The nutritional profiles were not affected in high extension. Fatty acids and sugars were slightly affected, decreasing with the increasing doses. The performed assays for antioxidant activity, indicate that irradiated samples tended to have lower scavenging activity and reducing power, but higher lipid peroxidation inhibition. Despite the detected differences in individual compounds, the results of nutritional parameters, the most relevant in terms of mushroom acceptability by consumers, were less affected, indicating an interesting potential of gamma-irradiation to be used as an effective conservation technology for the studied mushrooms.

Ecology and bioprospecting

Bioprospecting is the exploration of biodiversity for new resources of social and commercial value. It is carried out by a wide range of established industries such as pharmaceuticals, manufacturing and agriculture as well as a wide range of comparatively new ones such as aquaculture, bioremediation, biomining, biomimetic engineering and nanotechnology. The benefits of bioprospecting have emerged from such a wide range of organisms and environments worldwide that it is not possible to predict what species or habitats will be critical to society, or industry, in the future. The benefits include an unexpected variety of products that include chemicals, genes, metabolic pathways, structures, materials and behaviours. These may provide physical blueprints or inspiration for new designs. Criticism aimed at bioprospecting has been addressed, in part, by international treaties and legal agreements aimed at stopping biopiracy and many activities are now funded by agencies that require capacity-building and economic benefits in host countries. Thus, much contemporary bioprospecting has multiple goals, including the conservation of biodiversity, the sustainable management of natural resources and economic development. Ecologists are involved in three vital ways: first, applying ecological principles to the discovery of new resources. In this context, natural history becomes a vast economic database. Second, carrying out field studies, most of them demographic, to help regulate the harvest of wild species. Third, emphasizing the profound importance of millions of mostly microscopic species to the global economy.

Cultura de tecidos e conservação in vitro de Passiflora foetida L.

O gênero Passiflora ocorre principalmente em regiões de clima tropical, sendo o Brasil um importante centro de diversidade. Passiflora foetida L. é uma espécie silvestre que apresenta características de interesse ornamental e medicinal. O objetivo deste trabalho foi o estabelecimento de sistemas de cultura de tecidos e criopreservação para P. foetida. Explantes caulinares foram excisados de culturas primárias obtidas a partir de plântulas derivadas da germinação in vitro. Para isso foram inoculados em meio MSM, suplementado com diferentes concentrações de ANA, PIC, TDZ e BAP utilizado isoladamente ou em combinação com ANA, e mantidos na presença ou ausência de luz. Foi observada a produção de brotos, calos e raízes adventícias, de acordo com o tipo e a concentração do regulador de crescimento testado e da condição de cultura utilizada. A produção de plantas ocorreu via organogênese direta e indireta em resposta a BAP, enquanto que a formação de calos não morfogênicos foi observada a partir de ambos explantes em resposta a PIC. A produção de raízes adventícias ocorreu em resposta a ANA. Tendo em vista a produção de raízes observada em meio sólido, segmentos internodais foram inoculados em meio líquido suplementado com diferentes auxinas e mantidos em imersão contínua ou sobre pontes de papel de filtro. A maior taxa de multiplicação de raízes foi observada a partir de entrenós mantidos no sistema de ponte de papel de filtro, em resposta a ANA. Segmentos radiculares excisados das culturas primárias também foram utilizados visando à produção de brotos e a multiplicação de raízes. Contudo, apenas foi observada a formação de gemas, sem posterior desenvolvimento de brotos. Além disso, a capacidade proliferativa dos segmentos radiculares inoculados em meio suplementado com ANA foi menor que a obtida a partir dos entrenós cultivados nas mesmas condições. Neste trabalho, foram também testados diferentes protocolos de criopreservação para ápices caulinares de P. foetida por meio de vitrificação e encapsulamento-vitrificação. A recuperação de plantas pós-congelamento foi observada unicamente a partir de ápices encapsulados e expostos à solução de vitrificação PVS2 por 120 minutos. Tendo em vista o potencial medicinal já descrito para P. foetida, através dos diferentes sistemas de cultura desenvolvidos neste trabalho serão obtidos materiais para a avaliação de diferentes atividades biológicas.

Community-based fish culture in seasonal floodplains

During the rainy season in extensive river floodplains and deltaic lowlands, floods render the land unavailable for crop production for several months each year. These waters are considerably underutilized in terms of managed aquatic productivity. This raises the opportunity to enclose parts of these floodwater areas to produce a crop of specifically stocked aquatic organisms aside from the naturally occurring ‘wild’ species that are traditionally fished and are not affected by the culture activity, resulting in more high-quality, nutrient-dense food production and enhanced farm income for all stakeholders, notably the poor. The WorldFish Center and its national partners recently tested the concurrent rice-fish culture in the shallower flooded areas and the alternating rice-fish culture in the deep-flooded areas of Bangladesh and Viet Nam through a community-based management system. Results indicate that community-based fish culture in rice fields can increase fish production by about 600 kg/ha/year in shallow flooded areas and up to 1.5 t/ha/year in deep-flooded areas, without a reduction in the rice yield or wild fish catch.

Estradas e conectividade na Mata Atlântica: identificando áreas prioritárias para aplicação de medidas de mitigação

As rodovias podem representar um importante fator na fragmentação de habitat para espécies silvestres adaptadas a habitats de alta complexidade estrutural, como as florestas tropicais. As estradas reduzem a conectividade da paisagem e a capacidade da população regional em habitar todas as áreas adequadas e estes efeitos são mais significativos nas espécies que evitam a estrada, que são, muitas vezes, espécies de interior de florestas. A magnitude dos efeitos de barreira dependerá do comportamento e mobilidade destas espécies. Quando as estradas representam ralos (sink) ou barreiras para as populações, devido, respectivamente, aos atropelamentos ou à repulsa, medidas mitigadoras são indicadas para aumentar a conectividade entre as manchas de habitat separadas por essas estradas. A qualidade do habitat é um fator que deve ser considerado, mesmo com baixas frequências de atropelamentos nesses locais. O objetivo desse estudo foi propor dois métodos de seleção de áreas prioritárias para implantação de medidas mitigadoras dos efeitos das estradas sobre espécies de vertebrados florestais: Seleção Hierárquica Multivariada e Seleção Bivariada. A área de estudo foi o bioma Mata Atlântica, sendo recortado em paisagens hexagonais em três escalas diferentes (10.000, 1.000 e 100 km), usando a extensão Repeating Shapes no programa ArcGIS 9.3. Em cada hexágono foram calculados: área de floresta e de Unidade de Conservação, densidade de estradas e de hidrografia. Apenas os hexágonos cobertos por no mínimo 45% pela Mata Atlântica, com mais de 50% de cobertura florestal e mais de 1% de Unidades de Conservação foram incluídos nas análises. Após esta seleção, no método Seleção Hierárquica Multivariada, foi feita uma análise de componentes principais (PCA) com as quatro variáveis medidas, para cada escala separadamente. Os hexágonos foram então ordenados segundo o posicionamento deles no 1 Eixo da PCA de forma hierárquica e da maior para menor escala de hexágonos. Para área de estudo o método de Seleção Bivariada foi construído um gráfico de pontos, para cada escala de hexágono, com as variáveis cobertura florestal e rios. Foram selecionados os hexágonos que estavam localizados no quadrante do gráfico que representasse maior densidade de rios e maior porcentagem de cobertura florestal. Posteriormente foi feita uma simulação para avaliar se os métodos eram capazes de recuperar escores tão alto quanto a ordenação seguindo apenas o posicionamento dos hexágonos no Eixo 1 da PCA, sem uma análise hierárquica. O método de Seleção Hierárquica Multivariada foi mais eficiente para escolha de áreas prioritárias do que a Seleção Bivariada tanto para a escala intermediária (1.000 km) quanto para a menor escala (100 km). Os cinco hexágonos de 100 km mais prioritários estão localizados em São Paulo e Paraná, abrangendo quatro UCs (PARES de Jacupiranga, APA de Guaraqueçaba, APA Cananéia- Jacuípe e PARES da Ilha do Cardoso). Devido à simplicidade e fácil aplicabilidade do método, acredita-se que este pode ser uma opção interessante para escolha de áreas prioritárias para implantação de medidas mitigadoras dos efeitos de estradas

Estabelecimento de culturas de raízes e avaliação fitoquímica e da atividade antioxidante de Passiflora pohlii Mast

Passiflora pohlii Mast., conhecida como maracujá-do-campo ou maracujazinho, é uma espécie nativa do Brasil que apresenta características de interesse agronômico, principalmente em relação à tolerância a patógenos do solo pertencentes ao gênero Phytophtora sp, que provocam grandes prejuízos à cultura de maracujá. Embora ainda existam poucos trabalhos sobreesta espécie, estudos recentes com espécies do gênero descreveram atividades biológicas e farmacológicas em extratos de diferentes órgãos, incluindo folhas e raízes. O objetivo deste trabalho foi o estabelecimento de culturas de raízes adventícias a partir de segmentos caulinares e radiculares excisados de plantas in vitro de P. pohlii e a avaliação do perfil fitoquímico e do potencial antioxidante dos extratos obtidos a partir de diferentes materiais obtidos in vitro, em comparação com plantas mantidas in vivo. Foram testados diferentes sistemas de cultura, além de tipos e concentrações de auxinas para a indução de raízes adventícias in vitro a partir de segmentos caulinares e radiculares. As culturas foram mantidas à temperatura de 252C, na presença ou ausência de luz. As respostas obtidas variaram de acordo com o tipo de explante utilizado. Segmentos internodais apresentaram a melhor taxa de indução de rizogênese em meio solidificado com ágar e suplementado com ANA a 2,7 μM, na ausência de luz, enquanto que segmentos radiculares tiveram maior taxa de proliferação em meio líquido sob agitação, suplementado com AIA a 2,85 μM, na ausência de luz. Os materiais botânicos produzidos in vitro, incluindo plantas completas e raízes adventícias obtidas a partir de segmentos internodais e radiculares, assim como plantas obtidas in vivo, foram utilizados para a produção de extratos etanólicos para a avaliação do perfil fitoquímico e da atividade antioxidante. As análises por CCD e CLAE-UV indicaram a presença de flavonoides e saponinas nos extratos de folhas de plantas mantidas in vivo e obtidas in vitro, enquanto que os extratos de raízes apresentaram apenas saponinas. Os extratos de folhas foram ainda submetidos à análise por CLAE-UV-IES-EM visando à identificação da massa molecular das substâncias encontradas. Foram identificados dois flavonoides, possivelmente isômeros, com massas moleculares de 607,2, nos extratos de folhas de plantas mantidas in vivo e obtidas in vitro. O potencial antioxidante dos diferentes materiais foi determinado pelos ensaios de 2,2-difenil-1-picril-hidrazila e CCD-DPPH. As maiores atividades antioxidantes foram observadas nos extratos de raízes primárias e secundárias excisadas de plantas mantidas in vivo. As estratégias de cultura de raízes in vitro descritas neste trabalho foram aplicadas com sucesso para P. pohlii. Além disso, a caracterização do perfil fitoquímico do material obtido in vitro e de plantas mantidas in vivo, assim como do seu potencial farmacológico, foi realizada pela primeira vez para a espécie