Análise e simulação de um sistema de equações químicas do tipo difusão-reação

Neste trabalho estudamos um sistema de equações diferenciais parabólicas que modelam um processo de difusão-reação em duas dimensões da mistura molecular e reação química irreverssível de um só passo entre duas espécies químicas A e B para formar um produto P. Apresentamos resultados analíticos e computacionais relacionados à existência e unicidade da solução, assim como estimativas do erro local e global utilizando elementos finitos. Para os resultados analíticos usamos a teoria de semigrupos e o principio do m´aximo, e a simulação numérica é feita usando diferenças finitas centrais e o esquema simplificado de Ruge-Kutta. As estimativas do erro local para o problema semi-discretizado são estabelecidas usando normas de Sobolev, e para estimar o erro global usamos shadowing finito a posteriori. Os resultados computacionais obtidos mostram que o comportamento da solução está dentro do esperado e concorda com resultados da referências. Assim mesmo as estimativas do erro local e global são obtidas para pequenos intervalos de tempo e assumindo suficiente regularidade sobre a velocidade do fluído no qual realiza-se o processo. Destacamos que a estimativa do erro global usando shadowing finito é obtida sob hipóteses a posteriori sobre o operador do problema e o forte controle da velocidade numa vizinhança suficientemente pequena.

A equação de Poisson-Boltzmann em regiões com fronteira irregular

Propomos uma idealização da situação em que uma macromolécula é ionizada em um solvente. Neste modelo a área da superfície da molécula é suposta ser grande com respeito a seu diâmetro. A molécula é considerada como um dielétrico com uma distribuição de cargas em sua superfície. Utilizando as condições de transmissão, a distribuição de Boltzmann no solvente e resultados recentes sobre espaços de Sobolev no contexto de espaços métricos, bem como de integração sobre superfícies irregulares, o problema é formulado em forma variacional. Resultados clássicos do cálculo de variações permitem a resolução analítica do problema.

Movimento de partículas carregadas em fluidos ionizados : fundamentos matemáticos da teoria de eletroforese capilar

Neste trabalho, discutimos o movimento de uma macromolécula carregada em um fluido ionizado. A interação do campo elétrico é descrita pela equação de Poisson-Boltzmann acoplada às equações governantes para a dinâmica do fluido e às equações dinâmicas da partícula. Uma formulação fraca é introduzida no caso em que o domínio ocupado pelo fluido é finito e um teorema de existência de soluções fracas, local em tempo, é estabelecido. Dois modelos são considerados: fluxos não-estacionários e estacionários. No primeiro caso, a hidrodinâmica do sistema é governada pelas equações de Navier-Stokes, considerando-se um termo forçante relacionado ao potencial elétrico; no segundo caso, uma velocidade de deslizamento, a qual depende não linearmente sobre os potenciais, é introduzida como uma condição de contorno para um problema estacionário de Stokes. O caso de um fluido ocupando uma região infinita é também discutido supondo-se uma hipótese de aproximação sobre o campo elétrico.

Structuring research methods and data with the research object model: genomics workflows as a case study

Background: One of the main challenges for biomedical research lies in the computer-assisted integrative study of large and increasingly complex combinations of data in order to understand molecular mechanisms. The preservation of the materials and methods of such computational experiments with clear annotations is essential for understanding an experiment, and this is increasingly recognized in the bioinformatics community. Our assumption is that offering means of digital, structured aggregation and annotation of the objects of an experiment will provide necessary meta-data for a scientist to understand and recreate the results of an experiment. To support this we explored a model for the semantic description of a workflow-centric Research Object (RO), where an RO is defined as a resource that aggregates other resources, e.g., datasets, software, spreadsheets, text, etc. We applied this model to a case study where we analysed human metabolite variation by workflows. Results: We present the application of the workflow-centric RO model for our bioinformatics case study. Three workflows were produced following recently defined Best Practices for workflow design. By modelling the experiment as an RO, we were able to automatically query the experiment and answer questions such as “which particular data was input to a particular workflow to test a particular hypothesis?”, and “which particular conclusions were drawn from a particular workflow?”. Conclusions: Applying a workflow-centric RO model to aggregate and annotate the resources used in a bioinformatics experiment, allowed us to retrieve the conclusions of the experiment in the context of the driving hypothesis, the executed workflows and their input data. The RO model is an extendable reference model that can be used by other systems as well.

William Francis Thompson (1888–1965) and His Pioneering Studies of the Pacific Halibut, Hippoglossus stenolepis

William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.

William Francis Thompson (1888–1965) and His Pioneering Studies of the Pacific Halibut, Hippoglossus stenolepis

William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.

Once Upon a Misconception : Mark Juddery's Busted [A Review]

Forget Disney's timeless tales of rags-to-riches. Princesses are the most overrated public figures of all time. Apparently. Cinderella, after all, was 'a calculating, sinister go-getter' who murdered her step-mother at the instruction of a jealous governess (88). Sleeping Beauty was raped as she slept, woken not by the wet kiss of a handsome prince, but the kick and punch of twins stirring in her belly. Over the centuries, only the pea-detecting princess has remained herself: hedonistic, melodramatic and 'still perhaps the most pampered, precious wimp in the history of fairy tales' (88). There are, however, shards of truth to be salvaged from the fractured lives of these glassy-eyed women. After all, even Princess Mary worked in real estate.

Book Review: "Mark Considine, Jenny Lewis and Damon Alexander Networks, Innovation and Public Policy : Politicians, Bureaucrats and the Pathways to Change inside Government Houndsmills, UK: Palgrave Macmillan, 2009"

Having wrung the most from workforce and workplace productivity initiaitves, innovation has come to the fore as a key goal and directive for public sector organisations to become more efficient. This clarion call for innovation can be heard all around the world, with public services everywhere taking up the message to develop better, smarter, novel, more innovative processes, programs and policies. In the current push for innovation, networks are considered to be a superior vehicle through which collective knowledge can be shared and leveraged; replacing or at least supplementing the role function previously provided by inventive leaders...

Science fiction

Few science fiction films have been made in Australia by Australians for Australian audiences, with most of the handful of locally-produced films made since the mid-1990s. Yet there has always been a solid Australian audience for non-Australian science fiction films and a strong international niche audience for the genre. While Australia has provided below-the-line crews and heads of departments (cinematographers, production designers, and so on) for many non-Australian science fiction films produced domestically, few Australian film directors have specialised in the genre. This is somewhat surprising considering that Alex Proyas achieved a degree of international success for his gothic science fiction film Dark City (1998), and George Miller achieved international fame following the worldwide success of Mad Max II (1981). Although the science fiction element of Mad Max II is tenuous – and even more so in the case of the original Mad Max (George Miller, 1979) – Miller is credited with creating a new (sub)genre which incorporates science fiction elements and has been widely imitated internationally: the dystopian, post-apocalyptic movie. Nevertheless, Australia has only produced a small number of science fiction movies. In addition to the above films, key titles include: Mad Max Beyond Thunderdome (George Miller, 1985), Shirley Thompson versus the Aliens (Jim Sharman, 1972), The Time Guardian (Brian Hannant, 1987), The Chain Reaction (Ian Barry, 1980) and, more recently, Knowing (Alex Proyas, 2009), Daybreakers (Michael and Peter Spierig, 2009), and Iron Sky (Timo Vuorensola, 2012).

Using formative feedback to identify and support first year chemistry students with missing or misconceptions. A Practice Report

Students entering tertiary studies possess a diverse range of prior experiences in their academic preparation for tertiary chemistry so academics need tools to enable them to respond to issues in diversity in conceptual models possessed by entering students. Concept inventories can be used to provide formative feedback to help students identify concepts that they need to address to improve construction of subsequent understanding enabling their learning. Modular, formative learning activities that can be administered inside or outside of class in first year chemistry courses have been developed. These activities address key missing and mis-conceptions possessed by incoming student. Engagement in these learning activities by students and academics will help shift the culture of diagnostic and formative assessment within the tertiary context and address issues around the secondary/tertiary transition. This diagnostic/intervention framework is currently being trialed across five Australian tertiary institutions encompassing a large heterogeneous sample of students.