Spatial relationships between soil attributes and corn yield in no-tillage system

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Tree species community spatial structure in a terra firme Amazon forest, Brazil

All trees with diameter at breast height dbh >= 10.0 cm were stem-mapped in a "terra firme" tropical rainforest in the Brazilian Amazon, at the EMBRAPA Experimental Site, Manaus, Brazil. Specifically, the relationships of tree species with soil properties were determined by using canonical correspondence analyses based on nine soil variables and 68 tree species. From the canonical correspondence analyses, the species were grouped into two groups: one where species occur mainly in sandy sites, presenting low organic matter content; and another one where species occur mainly in dry and clayey sites. Hence, we used Ripley's K function to analyze the distribution of species in 32 plots ranging from 2,500 m(2) to 20,000 m(2) to determine whether each group presents some spatial aggregation as a soil variations result. Significant spatial aggregation for the two groups was found only at over 10,000 m(2) sampling units, particularly for those species found in clayey soils and drier environments, where the sampling units investigated seemed to meet the species requirements. Soil variables, mediated by topographic positions had influenced species spatial aggregation, mainly in an intermediate to large distances varied range (>= 20 m). Based on our findings, we conclude that environmental heterogeneity and 10,000 m(2) minimum sample unit sizes should be considered in forest dynamic studies in order to understand the spatial processes structuring the "terra firme" tropical rainforest in Brazilian Amazon.

The 1945-1949 droughts in Switzerland

This paper studies the representation of a drought period that affected Central Europe from 1945 to 1949 in the “Twentieth Century Reanalysis” (20CR). We analysed temperature and precipitation fields in 20CR and compared them to other data products. From the monthly precipitation rate at a 20CR grid point in the Swiss Plateau, the Standardised Precipitation Index over six months (SPI6) was calculated and compared with the corresponding index calculated from station data. For additional analyses, 20CR soil moisture, run off, and evaporation data were used. 20CR well reproduces the temperature and precipitation anomalies over Central Europe during this period, although during 1947, the precipitation anomaly is shifted to the east as compared to observations. With respect to the SPI6 index, the agreement between 20CR and station data is good except again for 1947 (conversely, drought was overestimated in 20CR for 1945 and 1949). Low SPI values in 20CR are accompanied by negative soil moisture anomalies and a negative water balance. Thus, apart from the shift in the spatial drought pattern in 1947, the drought is depicted in a realistic way in 20CR.

Spatial Distribution of Stem Cell-Like Keratinocytes in Dissected Compound Hair Follicles of the Dog

Hair cycle disturbances are common in dogs and comparable to some alopecic disorders in humans. A normal hair cycle is maintained by follicular stem cells which are predominately found in an area known as the bulge. Due to similar morphological characteristics of the bulge area in humans and dogs, the shared particularity of compound hair follicles as well as similarities in follicular biomarker expression, the dog is a promising model to study human hair cycle and stem cell disorders. To gain insight into the spatial distribution of follicular keratinocytes with stem cell potential in canine compound follicles, we microdissected hair follicles in anagen and telogen from skin samples of freshly euthanized dogs. The keratinocytes isolated from different locations were investigated for their colony forming efficiency, growth and differentiation potential as well as clonal growth. Our results indicate that i) compound and single hair follicles exhibit a comparable spatial distribution pattern with respect to cells with high growth potential and stem cell-like characteristics, ii) the lower isthmus (comprising the bulge) harbors most cells with high growth potential in both, the anagen and the telogen hair cycle stage, iii) unlike in other species, colonies with highest growth potential are rather small with an irregular perimeter and iv) the keratinocytes derived from the bulbar region exhibit characteristics of actively dividing transit amplifying cells. Our results now provide the basis to conduct comparative studies of normal dogs and those with hair cycle disorders with the possibility to extend relevant findings to human patients.

Trends in mean and extreme precipitation in the Mount Kenya region from observations and reanalyses

Land and water management in semi-arid regions requires detailed information on precipitation distribution, including extremes, and changes therein. Such information is often lacking. This paper describes statistics of mean and extreme precipitation in a unique data set from the Mount Kenya region, encompassing around 50 stations with at least 30 years of data. We describe the data set, including quality control procedures and statistical break detection. Trends in mean precipitation and extreme indices calculated from these data for individual rainy seasons are compared with corresponding trends in reanalysis products. From 1979 to 2011, mean precipitation decreased at 75% of the stations during the ‘long rains’ (March to May) and increased at 70% of the stations during the ‘short rains’ (October to December). Corresponding trends are found in the number of heavy precipitation days, and maximum of consecutive 5-day precipitation. Conversely, an increase in consecutive dry days within both main rainy seasons is found. However, trends are only statistically significant in very few cases. Reanalysis data sets agree with observations with respect to interannual variability, while correlations are considerably lower for monthly deviations (ratios) from the mean annual cycle. While some products well reproduce the rainfall climatology and some the spatial trend pattern, no product reproduces both.

Changes in spatial point patterns of pioneer woody plants across a large tropical landslide

We assessed whether the relative importance of positive and negative interactions in early successional communities varied across a large landslide on Casita Volcano (Nicaragua). We tested several hypotheses concerning the signatures of these processes in the spatial patterns of woody pioneer plants, as well as those of mortality and recruitment events, in several zones of the landslide differing in substrate stability and fertility, over a period of two years (2001 and 2002). We identified all woody individuals with a diameter >1 cm and mapped them in 28 plots measuring 10 × 10-m. On these maps, we performed a spatial point pattern analysis using univariate and bivariate pair-correlation functions; g (r) and g12 (r), and pairwise differences of univariate and bivariate functions. Spatial signatures of positive and negative interactions among woody plants were more prevalent in the most and least stressful zones of the landslide, respectively. Natural and human-induced disturbances such as the occurrence of fire, removal of newly colonizing plants through erosion and clearcutting of pioneer trees were also identified as potentially important pattern-creating processes. These results are in agreement with the stress-gradient hypothesis, which states that the relative importance of facilitation and competition varies inversely across gradients of abiotic stress. Our findings also indicate that the assembly of early successional plant communities in large heterogeneous landslides might be driven by a much larger array of processes than previously thought.

Genetic evidence for the vital function of osterix in cementogenesis

To date, attempts to regenerate a complete tooth, including the critical periodontal tissues associated with the tooth root, have not been successful. Controversy still exists regarding the origin of the cell source for cellular cementum (epithelial or mesenchymal). This disagreement may be partially due to a lack of understanding of the events leading to the initiation and development of the tooth roots and supportive tissues, such as the cementum. Osterix (OSX) is a transcriptional factor essential for osteogenesis, but its role in cementogenesis has not been addressed. In the present study, we first documented a close relationship between the temporal- and spatial-expression pattern of OSX and the formation of cellular cementum. We then generated 3.6 Col 1-OSX transgenic mice, which displayed accelerated cementum formation vs. WT controls. Importantly, the conditional deletion of OSX in the mesenchymal cells with two different Cre systems (the 2.3 kb Col 1 and an inducible CAG-CreER) led to a sharp reduction in cellular cementum formation (including the cementum mass and mineral deposition rate) and gene expression of dentin matrix protein 1 (DMP1) by cementocytes. However, the deletion of the OSX gene after cellular cementum formed did not alter the properties of the mature cementum as evaluated by backscattered SEM and resin-cast SEM. Transient transfection of Osx in the cementoblasts in vitro significantly inhibited cell proliferation and increased cell differentiation and mineralization. Taken together, these data support 1) the mesenchymal origin of cellular cementum (from PDL progenitor cells); 2) the vital role of OSX in controlling the formation of cellular cementum; and 3) the limited remodeling of cellular cementum in adult mice.

Utilising big transit data for transfer coordination

In public transport, seamless coordinated transfer strengthens the quality of service and attracts ridership. The problem of transfer coordination is sophisticated due to (1) the stochasticity of travel time variability, (2) unavailability of passenger transfer plan. However, the proliferation of Big Data technologies provides a tremendous opportunity to solve these problems. This dissertation enhances passenger transfer quality by offline and online transfer coordination. While offline transfer coordination exploits the knowledge of travel time variability to coordinate transfers, online transfer coordination provides simultaneous vehicle arrivals at stops to facilitate transfers by employing the knowledge of passenger behaviours.

Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study

The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatellite data set was analysed with a) spatial and non-spatial Bayesian individual-based clustering (IBC) approaches (STRUCTURE, TESS, BAPS and GENELAND), and b) multivariate methods [discriminant analysis of principal components (DAPC) and spatial principal component analysis (sPCA)]. Additionally, because isolation by distance (IBD) is a common spatial genetic pattern in mobile and continuously distributed species and it may represent a challenge to the performance of the above methods, the microsatellite data set was tested for its presence. Overall, the genetic structure of the stone marten in the Iberian Peninsula was characterized by a NE-SW spatial pattern of IBD, and this may explain the observed disagreement between clustering solutions obtained by the different IBC methods. However, there was significant indication for contemporary genetic structuring, albeit weak, into at least three different subpopulations. The detected subdivision could be attributed to the influence of the rivers Ebro, Tagus and Guadiana, suggesting that main watercourses in the Iberian Peninsula may act as semi-permeable barriers to gene flow in stone martens. To our knowledge, this is the first phylogeographic and population genetic study of the species at a broad regional scale. We also wanted to make the case for the importance and benefits of using and comparing multiple different clustering and multivariate methods in spatial genetic analyses of mobile and continuously distributed species.

木根麦冬基因流动与居群遗传变异的时空动态研究

本报告对木根麦冬的生态、遗传与进化等方面进行了综合研究，分析了木根麦冬居群内个体育性变异与基因流的模式与强度，研究了木根麦冬居群遗传变异在时间与空间的动态变化过程，深入探讨了该物种的适应策略、自然选择与进化模式。同时对生物进化中的一些基本问题进行了尝试性探讨。 一、影响有性繁殖生物居群中交配与繁殖成功的行为、生态与遗传现象最终决定等位基因与基因型的相对频率及其在世代间的变化。植物的交配系统不仅决定了居群未来世代的基因型频率，而且还影响到植物居群的有效大小、基因流和选择等其它进化因素。我们利用等位酶多态性，采用似然性方法与计算机模拟为木根麦冬三个居群的种子确定父本。共有90.1%的种子可以在居群中找到唯一的最可能父本。在这些种子中，56.1%在0.95的显著水平上可以确定唯一亲本。并且还发现：1．个体自交越多，产生的种子就越多;2．个体提供 给自己的有效花粉比提供给别的植株的有效花粉多，3．只接受花粉而不提供花粉的植株产生的种子少;4．只接受花粉而不提供花粉的植株产生种子的机会也少，综合我们以前的研究结果，可以认为，木根麦冬的交配系统正在或已经发 生了转变，从以异交为主到以自交为主。 二、点模式分析的结果表明在所研究的三个居群中，木根麦冬个体都表现出相对随机的分布。空间自相关分析却发现开花个体在空间聚集分布，呈斑块状开花。这个结果也表明个体空间分布模式与开花状态没有直接关系，集团性开花可能是一个促进花粉传播的适应特征：开花个体的聚集可能对传粉者形成强有力的吸引。空间自相关分析表明木根麦冬居群中大多数等位基因都聚集成一定大小的斑块。基因的聚集突出的说明了木根麦冬居群内基因流动的状况，花粉与种子的传播受到限制。传粉能力弱的传粉者以及种子的近距离的散布使基因局限于一定的小范围内，从而形成基因斑块，而斑块的大小由传粉者的活动范围及种子的传播距离决定。 三、基因纯合导致有害的隐性基因或部分致死的基因表达，使纯合子适合度降低，因此纯合子频率在世代间的变化将是衡量近交衰退的一个较好的指标。木根麦冬中亲代居群的观察杂合度大大高于子代居群，这个结果表明大量的纯合子在从种子到成株的过程中被淘汰。大量的纯合子被淘汰可能时由于隐性致死或有害等位基因纯合的结果，自交以及有亲缘关系的个体之间交配使有害等位基因与致死等位基因纯合，从而使一个远交种中出现自交衰退，过量的纯合子被淘汰是自交衰退的直接后果。

疏花水柏枝种群生态学及繁殖研究

疏花水柏枝(Myricaria laxiflora(Franch．)P．Y.Zhang et Y.J．Zhang)是我国三峡特有植物，是目前发现的唯一一种三峡水库蓄水后将被全部淹没的高等植物物种。本文结合前人的研究，通过详细的野外调查，摸清了疏花水柏枝的野生种群的分布及自然环境状况，较为全面、系统地研究了其生物学、群落学、种群学、生殖生态学等各方面的特征。最后，对其繁殖技术进行了着重研究，并提出了疏花水柏枝的的保护对策。 疏花水柏枝分布于我国亚热带长江三峡地区，位于东经109-0 32’~110-042、北纬30-0 59’~ 31-05’，海拔70 - 150米的范围内。疏花水柏枝为常绿灌木，具有很强的耐水淹的特性。其群落的植物区系组成中，以北温带分布和世界分布属为主，在各群落中疏花水柏枝均为建群种。在较小的尺度上（间距1m或更小），各群落中的疏花水柏枝种群均表现为聚集分布;在较大的尺度上（间距1.44m或更大），砾质地表的几个群落中疏花水柏枝种群表现为聚集分布，而沙质地表的群落中则表现为随机分布;幼苗在各种尺度上均表现为强烈的聚集分布。不同的群落中，疏花水柏枝种群的生物量有很大差异，变化范围为2,13 lt/hm2～5.340t/hm2，平均值为3.976t/hm2。疏花水柏枝的种群总体年龄结构比较稳定，但在不同的群落中差异较大。疏花水柏枝的的结实率高达95.12%，单位面积出种量平均为1.242×1()9粒/hm2。种子细小，寿命较短，新鲜饱满种子发芽率可达100%。冬季干旱和夏季水淹导致幼苗大量死亡。疏花水柏枝的扦插繁殖可获得较高的生根率，一年生插条的生根率明显高于多年生的插条。扦插苗移栽的成活率较高，并于第二年即可开花结实。种子繁殖也可获得较高的出苗率，但幼苗的死亡率很高。为保护这个物种，首先应加强宣传力度，进一步加强繁殖技术的研究，各北京植物园应大量引种栽培，并对其进行全面深入的研究，最终将其完全回归大自然。

植物种群小尺度空间结构的数量分析

采用位置指数、分异指数、结构复杂性指数、Shannon-Wiener多样性指数以及Ripley的K-方程，探讨了华南海岸英罗港红树植物木榄种群的分布格局、胸围和树高分异以及冠层结构方面的空间异质性。结果表明，多数木榄种群呈现随机分布，其个体胸围和树高的分异程度较低;而少数木榄种群呈现集群分布，其个体胸围和树高的分异程度明显。采用地理信息系统对木榄种群冠层和空隙斑块进行多种水平和垂直尺度的分析，冠层与空隙斑块之间的镶嵌格局因种群而异，这种格局可基于树冠投影用Shannon-Wiener多样性指数进行定量描述。冠层结构的空问异质性随空间尺度而变化，但这种变化在一定尺度范围内保持相对的稳定。这一尺度范围可作为木榄红树林更新或生态管理单位的参考尺度。 采用多重分形理论和方法对华南海岸北海红树林区红树植物白骨壤幼苗种群的分布格局进行了分析。结果表明，白骨壤幼苗种群的分布格局具有多标量和多重分形行为。随着q值由-2增加到4，Dq值介于1.078-1.997，f(a)值介于0.402-1.678，a(q)值介于0.909-2.480。多重分形的参数值与幼苗种群的集聚强度密切相关。差值（D。-D1）和[f(-1) –D]。是度量格局空间异质性程度的有效指数。海洋水文周期性规律、不同面积大小的裸地、树冠的阻拦作用等是制约白骨壤幼苗种群多重分形格局形成的主要因子。 采用地统计学理论和方法，对北京东灵山落叶松和胡桃楸针阔混交林下的克隆植物绢毛匍匐委陵菜分株种群的统计变量和土壤变量的空间格局进行了分析和比较。结果表明，绢毛匍匐委陵菜分株种群各器官生物量以及分株数和叶数的空间格局具有较高程度的异质性。总生物量以及茎、叶和根生物量的半方差函数曲线为指数模型，叶柄生物量、分株数和叶数的为球状模型，叶片生物量的为线性无基台值模型，而匍匐茎生物量的为纯块金效应模型。除叶片和匍匐茎的生物量外，其它器官生物量以及分株数和叶数由空间自相关引起的空间异质性．SHA主要表现在120-3 50cm的尺度范围内，SHA占总空间异质性的比例在50%以上。生境中，各种土壤变量的空间格局也具有较高程度的异质性。土壤含水量、NO3-、NH4+、有机质、全磷和PO4(3-)的半方差函数曲线为球状模型，而全氮、K+和pH的为指数模型。土壤变量由空间自相关引起的空间异质性SHA主要表现在8-lOOcm的尺度范围内，SHA占总空间异质性的比例在68%以上。绢毛匍匐委陵菜分株种群空间格局的自相关尺度显著大于其生境中土壤变量空间格局的自相关尺度，表明绢毛匍匐委陵菜通过匍匐茎相互联结的克隆分株种群对异质性土壤资源表现出较大的缓冲能力。绢毛匍匐委陵菜分株数的空间格局与土壤的含水量和全氮空间格局之间在几乎所有尺度上的相关性都不显著，但与其它土壤变量空间格局之间都存在不同程度的相关性，其中与NH4+、pH、PO4(3-)和全磷空间格局之间的相关性尺度范围较为明显和较大。通过分株数、叶数和生物量分配的可塑性变化，绢毛匍匐委陵菜分株种群的空间格局与土壤资源的空间格局之间产生相互联系，并随空间尺度的变化会发生改变。

Monitoring of organochlorine pesticides using PFU csystems in Yunnan lakes and rivers, China

Polyurethane foam unit (PFU) systems were collected from 11 lakes and three rivers in the Yunnan Plateau, China and, the PFU extrusion liquids, were analyzed for organochlorine pesticides (OCPs) by gas chromatography with electron capture detection (GCECD). The concentrations of pp'-DDE, HCB and HCHs were undetectable to 1.86 mu g l(-1) (mean 0.27 mu g l(-1)), undetectable to 0.72 mu g l(-1) (mean 0.11 mu g l(-1)), and 0.24-21.95 mu g l(-1) (mean 7.39 mu g l(-1)) respectively in lakes; and those in rivers were undetectable to 0.23 mu g l(-1) (mean 0.08 mu g l(-1)), 0.68-2.93 mu g l(-1) (mean 1.70 mu g l(-1)), and 2.71-37.56 mu g l(-1) (mean 17.01 mu g l(-1)) respectively. Notably, some residue levels of OCPs exceeded the US National Recommended Water Quality Criteria, implying Yunnan has levels of OCPs potentially harmful to human health. Further, the contamination by OCPs showed an obvious spatial distribution pattern. Amongst the lakes, Dianchi, Xingyun, Lugu and Yangzonghai had the highest OCP levels dominated by beta-HCH, whereas among rivers, Nujiang and Lancang Rivers had the highest contents of OCPs dominated by alpha-HCH. This demonstrates that HCHs are the predominant contaminants and some point sources of HCHs may still exist in Yunnan. The pollution levels in Yunnan were compared with other studies, suggesting the PFU method is suitable for long-term on-line monitoring of trace OCPs in aquatic ecosystems. Therefore, continuous studies monitoring OCPs in lakes and rivers are needed to further understand the future trend of contamination. (c) 2006 Elsevier Ltd. All rights reserved.

云雾山自然保护区优势植物种群分布格局的分形特征

对宁夏云雾山草原自然保护区植物种群分布格局的分形计盒维数进行了研究。结果表明:本氏针茅、铁杆蒿和百里香是该区的优势种。3种优势种的计盒维数在1.7左右,表明它们具有较大的空间占据能力。但是它们的计盒维数最大值出现的时间不同,本氏针茅、百里香计盒维数最大值出现在封育20a的样地中,铁杆蒿出现在封育25a的样地中。

辽宁中部城市群人口空间分布格局及动态演化

本文根据1992年和2006年Landsat TM影像，利用Erdas和ArcGIS软件，对辽宁省中部城市群的居民地、交通道路及人口分布格局进行了研究。 结果表明： 居民地分布格局： （1）辽宁省中部城市群居民地在斑块数量上主要以小型斑块为主，沈阳等几个大型城市在斑块面积上占主要地位。 （2）依据居民地面积的空间比重将辽宁省中部城市群居民地划分为东部地区、沈阳地区和西部地区3个特征区域，其中沈阳地区平均斑块面积最大，城市化程度最高；西部地区斑块密度最大，居民地最为密集；东部地区平均斑块面积和斑块密度均最小，居民地发育程度最低。 （3）尽管居民地在3个区域内都呈随机分布，但其指示参数——最邻近点指数还是体现出明显的区划差异。 （4）居民地分布受中心城市的影响显著，各中心城市的辐射范围不同，大小依次为沈阳>鞍山>铁岭>营口>辽阳>本溪>抚顺。 交通道路： （1）辽宁省中部城市群地区二级路所影响面积最大，一级路最小，影响的居民地斑块数目则为二级路>一级路>高速路。总体上二级公路的修建对居民地斑块数目和面积的变化贡献率最大。而对于辽宁省中部城市群七个城市来说不同等级的公路对各个地区有不同的贡献率。 （2）通过简单相关和偏相关分析，从定量角度阐明居民地和不同类型道路之间的相关关系和相关程度。其中，在简单相关系分析中, 高速公路与居民地面积最为相关，二级公路与居民地斑块个数最为相关；在偏相关分析中, 高速公路与居民地面积、高速公路与居民地斑块个数都最为相关，且表现出极显著相关（p<0.01）。 人口分布： （1）辽宁省中部城市群人口从1992-2006年来呈现递增趋势，人口继续向不均衡发展，东部人口聚集相对较少，西部人口则较为密集。 （2）从人口密度的增长幅度来看，变化最显著的是人口密度为150-200人/km2的地区，沈阳作为中心城市，是人口增长的热点。人口密度在200人/ km2以上的地区逐渐缩小，而面积渐次扩大，表明辽宁省中部城市群人口更加趋近于聚集性。 （3）人口重心向西南方向偏移， 且仅在沈阳地区内变动，重心移动路径大约3.77km，表明十四年来人口分布变化较小。 本文还对辽宁省中部城市群人口统计数据空间化的方法做了些探讨，设计了以GIS确定量化影响因子、以居民地信息和交通道路信息相结合的方法，成功建立了辽宁省中部城市群的人口数据格网分布表面，并用面插值方法进行平滑。其优势为：①建立的模型更接近于实际的人口分布。②通过面插值平滑方法可以使整个区域的人口数量保持一致。③所建立的模型数学形式简单，更容易设计和改进。