Patologia de sementes: ilustração das estruturas dos principais fungos em soja.

Material necessário para o Blotter Test; Procedimentos; Alternaria sp.; Aspergillus sp.; Cercospora kikuchii; Cercospora sojina; Chaetomium sp.; Colletotrichum truncatum; Curvularia sp.; Diaporthe sp.; Fusarium sp.; Glomerella glycines; Helminthosporium sp.; Macrophomina phaseolina; Myrothecium sp.; Nematospora corylli; Penicillium sp.; Peronospora manshurica; Pestalotia sp.; Phomopsis sp.; Rhizoctonia solani; Rosellinea sp.; Septoria glycines; Trichothecium roseum.

Development of a novel PCR assay for the identification of the black yeast, Exophiala (Wangiella) dermatitidis from adult patients with cystic fibrosis (CF)

Cystic fibrosis (CF) patients may suffer increased morbidity and mortality through colonisation, allergy and invasive infection from fungi. The black yeast, Exophiala dermatitidis (synonym Wangiella dermatitidis) has been found with increasing frequency in sputum specimens of CF patients, with reported isolation rates ranging from 1.1 to 15.7%. At present, no diagnostic PCR exists to aid with the clinical laboratory detection and identification of this organism. A novel species-specific PCR-based assay was developed for the detection of E. dermatitidis, based on employment of rDNA operons and interspacer (ITS) regions between these rDNA operons. Two novel primers, (designated ExdF & ExdR) were designed in silico with the aid of computer-aided alignment software and with the alignment of multiple species of Exophiala, as well as with other commonly described yeasts and filamentous fungi within CF sputum, including Candida. Aspergillus and Scedosporium. An amplicon of approximately 455 by was generated, spanning the partial ITS I region - the complete 5.8S rDNA region - partial ITS2 region, employing ExdF (forward primer [16-mer], 5'-CCG CCT ATT CAG GTC C-3' and ExdR (reverse primer [16-mer], 5'-TCT CTC CCA CTC CCG C-3', was employed and optimised on extracted genomic DNA from a well characterised culture of E. dermatitidis, as well as with high quality genomic DNA template from a further 16 unrelated fungi, including Candida albicans, C. dubliniensis, C. parapsilosis, C. glabrata, Scedosporium apiospermum, Penicillium sp., Aspergillus fumigatus, Aspergillus versicolor, Pichia guilliermondii, Rhodotorula sp., Trichosporon sp., Aureobasidium pullulans, Fusarium sp., Mucor hiemalis, Bionectria ochroleuca, Gibberella pulicaris. Results demonstrated that only DNA from E. dermatitidis gave an amplification product of the expected sire, whilst none of the other fungi were amplifiable. Subsequent employment of this primer pair detected this yeast from mycological cultures from 2/50 (4%) adult CF patients. These two patients were the only patients who were previously shown to have a cultural history of E. dermatitidis from their sputum. E. dermatitidis is a slow-growing fungus, which usually takes up to two weeks to culture in the microbiology laboratory and therefore is slow to detect conventionally, with the risk of bacterial overgrowth from common co-habiting pan- and multiresistant bacterial pathogens from sputum. namely Pseudomonas aeruginosa and Burkholderia cepacia complex organisms, hence this species-specific PCR assay may help detect this organism from CF sputum more specifically and rapidly. Overall, employment of this novel assay nay help in the understanding of the occurrence. aetiology and epidemiology of E. dermatitidis, as an emerging fungal agent in patients with CF. (C) 2008 European Cystic Fibrosis Society. Published by Elsevier B.V. All rights reserved.

Fungal contamination in two Portuguese wastewater treatment plants

The presence of filamentous fungi was detected in wastewater and air collected at wastewater treatment plants (WWTP) from several European countries. The aim of the present study was to assess fungal contamination in two WWTP operating in Lisbon. In addition, particulate matter (PM) contamination data was analyzed. To apply conventional methods, air samples from the two plants were collected through impaction using an air sampler with a velocity air rate of 140 L/min. Surfaces samples were collected by swabbing the surfaces of the same indoor sites. All collected samples were incubated at 27°C for 5 to 7 d. After lab processing and incubation of collected samples, quantitative and qualitative results were obtained with identification of the isolated fungal species. For molecular methods, air samples of 250 L were also collected using the impinger method at 300 L/min airflow rate. Samples were collected into 10 ml sterile phosphate-buffered saline with 0.05% Triton X-100, and the collection liquid was subsequently used for DNA extraction. Molecular identification of Aspergillus fumigatus and Stachybotrys chartarum was achieved by real-time polymerase chain reaction (RT-PCR) using the Rotor-Gene 6000 qPCR Detection System (Corbett). Assessment of PM was also conducted with portable direct-reading equipment (Lighthouse, model 3016 IAQ). Particles concentration measurement was performed at five different sizes: PM0.5, PM1, PM2.5, PM5, and PM10. Sixteen different fungal species were detected in indoor air in a total of 5400 isolates in both plants. Penicillium sp. was the most frequently isolated fungal genus (58.9%), followed by Aspergillus sp. (21.2%) and Acremonium sp. (8.2%), in the total underground area. In a partially underground plant, Penicillium sp. (39.5%) was also the most frequently isolated, also followed by Aspergillus sp. (38.7%) and Acremonium sp. (9.7%). Using RT-PCR, only A. fumigatus was detected in air samples collected, and only from partial underground plant. Stachybotrys chartarum was not detected in any of the samples analyzed. The distribution of particle sizes showed the same tendency in both plants; however, the partially underground plant presented higher levels of contamination, except for PM2.5. Fungal contamination assessment is crucial to evaluating the potential health risks to exposed workers in these settings. In order to achieve an evaluation of potential health risks to exposed workers, it is essential to combine conventional and molecular methods for fungal detection. Protective measures to minimize worker exposure to fungi need to be adopted since wastewater is the predominant internal fungal source in this setting.

Characterizing the fungal and bacterial microflora and concentrations in fitness centres

Fitness centres are special places where conditions for microbiological proliferation should be considered. Moisture due to human perspiration and water condensation as a result of human physical activities are prevalent in this type of buildings. Exposure to microbial contaminants is clinically associated with respiratory disorders and people who work out in polluted environments would be susceptible to contaminants. This work studied the indoor air contamination in three gymnasiums in Lisbon. The sampling was performed at two periods: at the opening (morning) and closing (night) of the three gymnasiums. The airborne bacterial and fungal populations were sampled by impaction directly onto Tryptic Soy Agar (for bacteria) and Malt Extract Agar (for fungi) plates, using a Merck MAS-100 air sampler. Higher bacterial concentrations were found at night as compared to the morning but the same behaviour was not found for fungal concentrations. Gram-negative catalase positive cocci were the dominant bacteria in indoor air samples of the studied gymnasiums. In this study, 21 genera/species of fungal colonies were identified. Chrysosporium sp., Chrysonilia sp., Neoscytalidium hialinum, Sepedonium sp. and Penicillium sp. were the most prevalent species identified in the morning, while Cladosporium sp., Penicillium sp., Chrysosporium sp., Acremonium sp. and Chrysonilia sp. were more prevalent at night. A well-designed sanitation and maintenance program for gymnasiums is needed to ensure healthier space for indoor physical activity.

An unusual postharvest spotting disease of the comercial mushroom, Agaricus bisporus, caused by a novel pathovar of Pseudomonas tolaasii

An unusual postharvest spotting disease of the commercial mushroom, Agaricus bisporus, which was observed on a commercial mushroom farm in Ontario, was found to be caused by a novel pathovar of Pseudomonas tolaasii. Isolations from the discoloured lesions, on the mushroom pilei, revealed the presence of several different bacterial and fungal genera. The most frequently isolated genus being Pseudomonas bacteria. The most frequently isolated fungal genus was Penicillium. Of the bacteria and fungi assayed for pathogenicity to mushrooms, only Pseudomonas tolaasii was able to reproduce the postharvest spotting symptom. This symptom was typically reproduced 1 to 7 days postharvest, when mushroom pilei were inoculated with 101 to 105 cfu. Of the fungi tested for pathogenicity only a Penicillium sp. and Verticillium fungicola were shown to be pathogenic, however, neither produced the postharvest spotting symptom. The Pseudomonas tolaasii strain isolated from the postharvest lesions differed from a type culture (Pseudomonas tolaasii ATCC 33618) in the symptoms it produced on Agaricus bisporus pilei under the same conditions and at the same inoculum concentration. It was therefore designated a pathovar. This strain also differed from the type culture in its cellular protein profile. Neither the type culture, nor the mushroom pathogen was found to contain plasmid DNA. The presence of plasmid DNA is therefore not responsible for the difference in pathogenicity between the two strains.

Production and Characterization of Lignin Peroxidases from Mangrove Ascomycetes

In this thesis, the production and characterization of ligninolytic enzymes using the fungi isolated from mangrove area are studied. The objective of the present work are isolation and screening of dye decolorizing micro-organisms from mangrove area, screening of the selected microorganisms for the production of lignin degrading enzymes, identification of the potent micro-organisms, characterization of the crude enzyme, lignin peroxidase, of the selected fungi—Aspergillus sp. SIP 11 and Penicillium sp. SIP 10 etc. This included the determination of the optimum pH, temperature, veratryl alcohol and H2O2 concentration. Besides the stability of crude LiP at different pHs and temperatures were studied. The immense applications, particularly in bioremediation, to which the lignin degrading micro-organisms could be used make this study important, the ascomycetes and deuteromycetes fungi, especially form the marine environment were studied with respect to their ligninolytic enzyme system making this study an initial step in unraveling the vast hidden potential of these microbes in bioremediation, the marine microbes are halophilic in nature which make them better suited to cope with the high salinity of industrial effluents thereby giving them added advantage in the filed of bioremediation. The thesis deals with the isolation and screening of lignin degrading enzyme-producing microbes from mangrove area. The identification of the most potent fungal isolates and characterization of LiP from these are also done.

Production and Characterization of Lignin Peroxidases from Mangrove Ascomycetes

The continually growing worldwide hazardous waste problem is receiving much attention lately. The development of cost effective, yet efficient methods of decontamination are vital to our success in solving this problem.Bioremediation using white rot fungi, a group of basidiomycetes characterized by their ability to degrade lignin by producing extracellular LiP, MnP and laccase have come to be recognized globally which is described in detail in Chapter 1.These features provide them with tremendous advantages over other micro-organisms.Chapter 2 deals with the isolation and screening of lignin degrading enzyme producing micoro-organisms from mangrove area. Marine microbes of mangrove area has great capacity to tolerate wide fluctuations of salinitie.Primary and secondary screening for lignin degrading enzyme producing halophilic microbes from mangrove area resulted in the selection of two fungal strains from among 75 bacteria and 26 fungi. The two fungi, SIP 10 and SIP ll, were identified as penicillium sp and Aspergillus sp respectively belonging to the class Ascomycetes .Specific activity of the purified LiP was 7923 U/mg protein. The purification fold was 24.07 while the yield was 18.7%. SDS PAGE of LiP showed that it was a low molecular weight protein of 29 kDa.Zymogram analysis using crystal violet dye as substrate confirmed the peroxidase nature of the purified LiP.The studies on the ability of purified LiP to decolorize different synthetic dyes was done. Among the dyes studied, crystal violet, a triphenyl methane dye was decolorized to the greatest extent.

Caracterización de las concentraciones en aire de bioaerosoles cultivables y contables en sistemas de ventilación mecánica de edificaciones administrativas en la ciudad de Bogotá en el periodo 2012 2013

Un problema de salud ambiental relevante es la contaminación del aire generado por diferentes factores, uno de ellos es la carga microbiana. El estudio evidencia la presencia de estos contaminantes del aire como son los bioaerosoles cultivables y contables en las áreas de los edificios administrativos estudiados la cual podría afectar la calidad del aire interior. Se realizó un estudio observacional de corte transversal que permitió conocer y establecer las características de la carga microbiana presente relacionada con bioaerosoles cultivables y contables en los sistemas de ventilación mecánica en tres edificios administrativos de la ciudad de Bogotá en el periodo 2012 a 2013 y, la asociación o no entre variables de interés. Los bioaerosoles cultivables y contables encontrados con mayores porcentajes en las muestras tomadas fueron comunes a los tres edificios así: Aspergillus sp. se encontró en el 77,2% (61) de las muestras para el edifico uno, mientras que para el dos fue de 91% (30) de las muestras y para el edificio tres 100% (19) de las muestras tomadas; seguido por el género Penicillium sp. del cual se encontró 60,8% (48) de las muestras para el edificio uno, para el edificio dos 87,9% (29) de las muestras y para el edificio tres 94,7% (18) de las muestras. Otro género encontrado en porcentajes altos en los tres edificios fue el Cladosporium sp. , en el edificio uno 41,8% (33) de las muestras, mientras que para el edificio dos correspondió al 100% (33) de las muestra y finalmente para el edificio tres 84,2% (16) de las muestras analizadas. Los hallazgos se correlacionan con lo reportado por la literatura.

Indoor and outdoor atmospheric fungal spores in the So Paulo metropolitan area (Brazil): species and numeric concentrations

The aim of this study was to estimate the indoor and outdoor concentrations of fungal spores in the Metropolitan Area of Sao Paulo (MASP), collected at different sites in winter/spring and summer seasons. The techniques adopted included cultivation (samples collected with impactors) and microscopic enumeration (samples collected with impingers). The overall results showed total concentrations of fungal spores as high as 36,000 per cubic meter, with a large proportion of non culturable spores (around 91% of the total). Penicillium sp. and Aspergillus sp. were the dominant species both indoors and outdoors, in all seasons tested, occurring in more than 30% of homes at very high concentrations of culturable airborne fungi [colony forming units(CFU) m(-3)]. There was no significant difference between indoor and outdoor concentrations. The total fungal spore concentration found in winter was 19% higher than that in summer. Heat and humidity were the main factors affecting fungal growth; however, a non-linear response to these factors was found. Thus, temperatures below 16A degrees C and above 25A degrees C caused a reduction in the concentration (CFU m(-3)) of airborne fungi, which fits with MASP climatalogy. The same pattern was observed for humidity, although not as clearly as with temperature given the usual high relative humidity (above 70%) in the study area. These results are relevant for public health interventions that aim to reduce respiratory morbidity among susceptible populations.

Incidência de fungos em pós-colheita de banana 'Prata anã'(Musa AAB)

Este trabalho teve por objetivo determinar a ocorrência e a freqüência de fungos em banana 'Prata anã' e elucidar o agente causal das podridões em pós-colheita de frutos provenientes do norte de Minas Gerais. Dois métodos de isolamento foram adotados: diluição em placas, a partir da lavagem de frutos verdes, e direto de frutos maduros. Os fungos Colletotrichum musae, Trichoderma harzianum, Fusarium equisetii, Penicillium sp. Aspergillus parasiticus, Trichothecium roseum, Colletotrichum acutatum, Alternaria sp., Cladosporium musae e Curvularia lunata foram os mais freqüentemente associados aos frutos. A patogenicidade desses fungos foi testada pela substituição de discos da casca de frutos verdes por discos de micélio. Colletotrichum musae apresentou área média lesionada em torno do ponto de inoculação igual a 5,8 cm², enquanto para os demais fungos testados não passou de 1,50 cm². Os resultados mostraram que C. musae é o agente primário das podridões dos frutos examinados com 100 % de incidência e os demais fungos limitaram-se a necrosar os ferimentos em torno do ponto de inoculação. O modo de infecção latente, causada por C. musae, parece favorecer, primeiramente, a colonização interna dos tecidos e, posteriormente, a ação dos fungos oportunistas, que aceleram as podridões nos frutos e na coroa.

Desempenho de sementes de algodão tratadas quimicamente e armazenadas

Considerando que o armazenamento desempenha papel decisivo na manutenção da qualidade da semente, desenvolveu-se este trabalho com o objetivo de avaliar a qualidade fisiológica e fitossanitária de sementes de algodão, tratadas quimicamente e armazenadas por doze meses. Foram utilizados dois lotes de sementes de algodão cv. DeltaPine-AC90, deslintados quimicamente, que foram submetidos aos tratamentos fungicidas e inseticidas: testemunha; Disulfoton + Carboxin + Thiram; Carbofuran + Carboxin + Thiram; Imidacloprid + Tolylfluanid + Pencycuron. As sementes foram armazenadas em armazém sem controle de temperatura e umidade relativa do ar. Foram retiradas amostras de sementes no início do armazenamento e a cada dois meses e avaliadas quanto ao teor de água, à porcentagem de germinação, ao vigor (testes de envelhecimento acelerado e de germinação à baixa temperatura), à sanidade e à emergência das plântulas. O delineamento utilizado foi o inteiramente casualizado, em esquema fatorial, com quatro repetições. Verificou-se redução da germinação e do vigor de sementes em função do armazenamento. A redução da qualidade fisiológica associou-se com o aumento na ocorrência de Aspergillus sp. e Penicillium sp. nas sementes. A manutenção da qualidade de sementes de algodão foi obtida até o oitavo mês de armazenagem, podendo-se concluir que: a eficiência do tratamento químico de sementes de algodão depende da combinação de produtos utilizados; não se deve tratar com fungicida sementes de algodão com baixo nível de vigor; a ocorrência dos fungos Aspergillus sp. e Penicillium sp. aumentou com o período de armazenamento nas sementes sem tratamento e que a manutenção da qualidade de sementes de algodão para comercialização depende da sua qualidade inicial e do período de armazenamento.

Growth and enzymatic responses of phytopathogenic fungi to glucose in culture media and soil

The effect of inoculation of Aspergillus flavus, Fusarium verticillioides, and Penicillium sp. in Dystrophic Red Latosol (DRL) and Eutroferric Red Latosol (ERL) soils with or without glucose on the total carbohydrate content and the dehydrogenase and amylase activities was studied. The fungal growth and spore production in culture medium with and without glucose were also evaluated. A completely randomized design with factorial arrangement was used. The addition of glucose in the culture medium increased the growth rate of A. flavus and Penicillium sp. but not of F. verticillioides. The number of spores increased 1.2 for F. verticillioides and 8.2 times for A. flavus in the medium with glucose, but was reduced 3.5 times for Penicillium sp. The total carbohydrates contents reduced significantly according to first and second degree equations. The consumption of total carbohydrates by A. flavus and Penicillium sp. was higher than the control or soil inoculated with F. verticillioides. The addition of glucose to soils benefited the use of carbohydrates, probably due to the stimulation of fungal growth. Dehydrogenase activity increased between 1.5 to 1.8 times (p <0.05) in soils with glucose and inoculated with the fungi (except F. verticillioides), in relation to soil without glucose. Amylase activity increased 1.3 to 1.5 times due to the addition of glucose in the soil. Increased amylase activity was observed in the DRL soil with glucose and inoculated with A. flavus and Penicillium sp. when compared to control.

Eficiência do fungicida carboxin + thiram no tratamento de sementes de amendoim

O tratamento de sementes com fungicida é um seguro de baixo custo para os produtores de sementes e plantadores de amendoim. O uso de fungicidas adequados pode contribuir para o melhor desempenho do material de propagação, proporcionando maiores rendimentos na colheita. Esta pesquisa teve por objetivo avaliar a eficiência do fungicida carboxin + thiram e a viabilidade do uso de óleo vegetal e de surfactante à base de organosilicone como agentes veiculadores do fungicida, no controle de fungos associados às sementes de amendoim. Foram comparadas duas doses de carboxin + thiram (50 + 50 e 70 + 70 g.i.a./100 kg de sementes) em mistura com água e a dose de 50 + 50 g.i.a./100 kg de sementes em mistura com os agentes veiculadores, avaliando-se os efeitos na germinação e vigor das sementes e estabelecimento da cultura no campo. Verificou-se que o principal efeito benéfico dos tratamentos é a redução significativa de sementes mortas e/ou da ocorrência de damping-off de pré-emergência. Independentemente da dose, o fungicida associado à água, proporciona controle eficiente dos patógenos presentes nas sementes, exceto no caso de Rhizopus sp. O óleo vegetal e o surfactante proporcionam melhor cobertura e aderência do fungicida às sementes, aumentando a eficiência do mesmo no controle de Aspergillus spp. e de Penicillium sp. Não se constata efeito fitotóxico do fungicida e dos agentes veiculadores sobre as sementes de amendoim.

Efeito da colhedora, velocidade e ponto de coleta na contaminação de sementes de soja por fungos

A pesquisa foi realizada com o objetivo de avaliar a qualidade sanitária de sementes de soja cv. Coodetec 217, colhidas por duas colhedoras operando em velocidades e pontos de coleta distintos. O delineamento foi inteiramente casualizado, no esquema fatorial 2x2x2. Os tratamentos foram constituídos por duas máquinas Massey Ferguson (MF 2003 e MF 2004), duas velocidades (4 e 7 Km.h¹) e dois pontos de coleta (tanque graneleiro e saída do tubo de descarga). A sanidade foi avaliada pelo método do papel de filtro, com quatro repetições de 50 sementes. Houve interação significativa para os fatores colhedora e ponto de coleta para a incidência de Penicillium sp. e Fusarium sp., entre colhedora e velocidade para Aspergillus spp., e, entre velocidade e ponto de coleta para Penicillium sp.. A presença de fungos associados às sementes, principalmente, Cladosporium sp. e Fusarium sp., independe do tipo de colhedora. Uma menor contaminação fúngica é observada nas sementes coletadas na saída do tubo de descarga à 4 Km.h-1. Para Fusarium sp., Aspergillus spp., e Penicillium sp. existe uma dependência dos fatores sobre suas incidências nas sementes da cultivar analisada, sob as condições estudadas.

Pectinase production by fungal strains in solid-state fermentation using agro-industrial bioproduct

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)