981 resultados para Oxygen evolving complex
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本文主要研究了一系列具有不同配位环璄的锰化合物与去锰PSII颗粒的光组装过程;其次,应用太赫兹时域光谱技术对锰稳定蛋白PsbO蛋白的结构与功能进行了研究。主要结果如下: 1. 选择了一组单核、锰中心原子为二价、与羧基氧和氮配位的锰化合物与去锰光系统II颗粒进行了重组研究。研究结果表明,锰化合物中锰原子和氮原子的配位连接是影响电子传递恢复和放氧复合物重组效率的重要因素。锰化合物中锰原子与氮原子的配位,促进了锰原子与PSII脱辅基蛋白上的氨基酸残基进行光配位。33 kDa蛋白的加入显著提高光组装放氧活性,33 kDa蛋白的柔性构象有助于锰簇接受体积大的分子,并提高其稳定性,从而促进PSII反应中心锰簇的光组装。 2. 选择了一组拥有相同配体、锰中心原子价态不同的锰化合物与去锰PSII 颗粒进行重组。三个锰价态为+2,+3,+4价的锰化合物均表现出较高的恢复电子传递和放氧活性的能力,但锰与配体氧原子共价连接的锰化合物恢复电子传递和放氧活性的能力的很差,Mn-O连接阻碍WOC的重组。研究结果表明,锰化合物恢复电子传递活性和放氧活性的能力也受其中锰原子的价态及其它结构因素的影响。锰价态较低的锰化合物比锰价态较高的锰化合物更容易向PSII反应中心提供电子。锰化合物恢复电子传递和放氧活性的因素是不同的。锰化合物作为有效电子供体的效率与其螯合环数成反比,但配体的大小不是影响锰化合物重组放氧活性的主要因素。 3. 应用太赫兹时域光谱技术结合荧光光谱技术,研究了锰稳定蛋白PsbO在与金属离子作用及单个氨基酸被修饰后其构象变化和低频振动模的变化。实验结果显示,该蛋白上唯一的色氨酸对整个蛋白构象至关重要,它的改变引起整个蛋白分子低频振动模发生明显改变。此外,太赫兹时域光谱结果显示,PsbO可能含有钙结合位点。太赫兹时域光谱技术在研究蛋白构象变化,尤其是金属离子诱导的构象变化方面是相当灵敏的。
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Higher plants have evolved a well-conserved set of photoprotective mechanisms, collectively designated Non-Photochemical Quenching of chlorophyll fluorescence (qN), to deal with the inhibitory absorption of excess light energy by the photosystems. Their main contribution originates from safe thermal deactivation of excited states promoted by a highly-energized thylakoid membrane, detected via lumen acidification. The precise origins of this energy- or LlpH-dependent quenching (qE), arising from either decreased energy transfer efficiency in PSII antennae (~ Young & Frank, 1996; Gilmore & Yamamoto, 1992; Ruban et aI., 1992), from alternative electron transfer pathways in PSII reaction centres (~ Schreiber & Neubauer, 1990; Thompson &Brudvig, 1988; Klimov et aI., 1977), or from both (Wagner et aI., 1996; Walters & Horton, 1993), are a source of considerable controversy. In this study, the origins of qE were investigated in spinach thylakoids using a combination of fluorescence spectroscopic techniques: Pulse Amplitude Modulated (PAM) fluorimetry, pump-probe fluorimetry for the measurement of PSII absorption crosssections, and picosecond fluorescence decay curves fit to a kinetic model for PSII. Quenching by qE (,..,600/0 of maximal fluorescence, Fm) was light-induced in circulating samples and the resulting pH gradient maintained during a dark delay by the lumenacidifying capabilities of thylakoid membrane H+ ATPases. Results for qE were compared to those for the addition of a known antenna quencher, 5-hydroxy-1,4naphthoquinone (5-0H-NQ), titrated to achieve the same degree of Fm quenching as for qE. Quenching of the minimal fluorescence yield, F0' was clear (8 to 130/0) during formation of qE, indicative of classical antenna quenching (Butler, 1984), although the degree was significantly less than that achieved by addition of 5-0H-NQ. Although qE induction resulted in an overall increase in absorption cross-section, unlike the decrease expected for antenna quenchers like the quinone, a larger increase in crosssection was observed when qE induction was attempted in thylakoids with collapsed pH gradients (uncoupled by nigericin), in the absence of xanthophyll cycle operation (inhibited by DTT), or in the absence of quenching (LlpH not maintained in the dark due to omission of ATP). Fluorescence decay curves exhibited a similar disparity between qE-quenched and 5-0H-NQ-quenched thylakoids, although both sets showed accelerated kinetics in the fastest decay components at both F0 and Fm. In addition, the kinetics of dark-adapted thylakoids were nearly identical to those in qEquenched samples at F0' both accelerated in comparison with thylakoids in which the redox poise of the Oxygen-Evolving Complex was randomized by exposure to low levels of background light (which allowed appropriate comparison with F0 yields from quenched samples). When modelled with the Reversible Radical Pair model for PSII (Schatz et aI., 1988), quinone quenching could be sufficiently described by increasing only the rate constant for decay in the antenna (as in Vasil'ev et aI., 1998), whereas modelling of data from qE-quenched thylakoids required changes in both the antenna rate constant and in rate constants for the reaction centre. The clear differences between qE and 5-0H-NQ quenching demonstrated that qE could not have its origins in the antenna alone, but is rather accompanied by reaction centre quenching. Defined mechanisms of reaction centre quenching are discussed, also in relation to the observed post-quenching depression in Fm associated with photoinhibition.
Towards reverse engineering of Photosystem II: Synergistic Computational and Experimental Approaches
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ABSTRACT Photosystem II (PSII) of oxygenic photosynthesis has the unique ability to photochemically oxidize water, extracting electrons from water to result in the evolution of oxygen gas while depositing these electrons to the rest of the photosynthetic machinery which in turn reduces CO2 to carbohydrate molecules acting as fuel for the cell. Unfortunately, native PSII is unstable and not suitable to be used in industrial applications. Consequently, there is a need to reverse-engineer the water oxidation photochemical reactions of PSII using solution-stable proteins. But what does it take to reverse-engineer PSII’s reactions? PSII has the pigment with the highest oxidation potential in nature known as P680. The high oxidation of P680 is in fact the driving force for water oxidation. P680 is made up of a chlorophyll a dimer embedded inside the relatively hydrophobic transmembrane environment of PSII. In this thesis, the electrostatic factors contributing to the high oxidation potential of P680 are described. PSII oxidizes water in a specialized metal cluster known as the Oxygen Evolving Complex (OEC). The pathways that water can take to enter the relatively hydrophobic region of PSII are described as well. A previous attempt to reverse engineer PSII’s reactions using the protein scaffold of E. coli’s Bacterioferritin (BFR) existed. The oxidation potential of the pigment used for the BFR ‘reaction centre’ was measured and the protein effects calculated in a similar fashion to how P680 potentials were calculated in PSII. The BFR-RC’s pigment oxidation potential was found to be 0.57 V, too low to oxidize water or tyrosine like PSII. We suggest that the observed tyrosine oxidation in BRF-RC could be driven by the ZnCe6 di-cation. In order to increase the efficiency of iii tyrosine oxidation, and ultimately oxidize water, the first potential of ZnCe6 would have to attain a value in excess of 0.8 V. The results were used to develop a second generation of BFR-RC using a high oxidation pigment. The hypervalent phosphorous porphyrin forms a radical pair that can be observed using Transient Electron Paramagnetic Resonance (TR-EPR). Finally, the results from this thesis are discussed in light of the development of solar fuel producing systems.
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Im Rahmen dieser Arbeit wurden zweikernige Modellkomplexe zur Untersuchung der Radikal-Metallwechselwirkung innerhalb des wasseroxidierenden Zentrums des Photo¬systems II synthetisiert und eine magneto-strukturelle Korrelation dieser Komplexe erstellt. Als Liganden wurden diverse sechs- bis siebenzähnige Chelatliganden verwendet, welche über zwei Koordinationstaschen und eine verbrückende Phenolatgruppe verfügen. Zwei daran gebundene Manganionen liegen in einer wohl definierten Umgebung nicht koordinativ gesättigt vor. An die freien Koordinationsstellen können weitere ein bis zwei Brückenliganden binden, bei denen es sich in dieser Arbeit hauptsächlich um Carboxylate handelt. Durch die Verwendung eines diamagnetischen Brückenliganden konnte die magnetische Spin-Spin-Austauschwechselwirkung zwischen den spintragenden Manganionen über die verbrücken¬de Phenolatgruppe bestimmt werden. Komplexe, welche über Manganionen in den gleichen Oxidationsstufen, aber über unterschiedliche Carboxylatbrückenliganden verfügen, weisen ähnliche magnetische Austauschwechselwirkungen zwischen den Metallzentren auf. Diese Beobachtung konnte durch eine strukturelle Ähnlichkeit dieser Komplexe erklärt werden. Mittels Aufsummieren der Bindungslängen der verbrückenden Phenolateinheit zu beiden Zentralionen kann innerhalb dieser Komplexe jeweils die Länge des Wechselwirkungspfades erhalten werden, welcher die magnetische Austauschwechselwirkung maßgeblich beein¬flusst. Je länger der Wechselwirkungspfad ist, desto kleiner ist die Austausch¬wechsel¬wirkung. Durch Austausch der diamagnetischen Carboxylate durch paramagnetische benzoat¬substituierte Nitronyl Nitroxid Radikale wurden den Komplexen ein bis zwei weitere Spinzentren hinzugefügt, welche mit den Spins der Zentralionen wechselwirken können. Simulationen der magnetischen Suszeptibilitätsmessungen liefern Werte für die magneti¬schen Austausch¬wechselwirkungen zwischen den Nitronyl Nitroxid Radikalen und den Manganionen, die in allen Fällen schwach ferromagnetisch zwischen 0 und 4,7 cm-1 sind. In einer Auftragung dieser Austauschwechselwirkungen gegen die Mangan-Carboxylat-Bindungs¬längen von strukturell charakterisierten äquivalenten acetatverbrückten Komplexen, kann eine lineare Abhängigkeit gezeigt werden.
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The bacterial pathogen Pseudomonas syringae pv tomato DC3000 suppresses plant innate immunity with effector proteins injected by a type III secretion system (T3SS). The cysteine protease effector HopN1, which reduces the ability of DC3000 to elicit programmed cell death in non-host tobacco, was found to also suppress the production of defence-associated reactive oxygen species (ROS) and callose when delivered by Pseudomonas fluorescens heterologously expressing a P. syringae T3SS. Purified His 6 -tagged HopN1 was used to identify tomato PsbQ, a member of the oxygen evolving complex of photosystem II (PSII), as an interacting protein. HopN1 localized to chloroplasts and both degraded PsbQ and inhibited PSII activity in chloroplast preparations, whereas a HopN1 D299A non-catalytic mutant lost these abilities. Gene silencing of NtPsbQ in tobacco compromised ROS production and programmed cell death.
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To assess the availability of Ca2+ in the lumen of the thylakoid membrane that is required to support the assembly of the oxygen-evolving complex of photosystem II, we have investigated the mechanism of 45Ca2+ transport into the lumen of pea (Pisum sativum) thylakoid membranes using silicone-oil centrifugation. Trans-thylakoid Ca2+ transport is dependent on light or, in the dark, on exogenously added ATP. Both light and ATP hydrolysis are coupled to Ca2+ transport through the formation of a transthylakoid pH gradient. The H+-transporting ionophores nigericin/K+ and carbonyl cyanide 3-chlorophenylhydrazone inhibit the transport of Ca2+. Thylakoid membranes are capable of accumulating up to 30 nmol Ca2+ mg−1 chlorophyll from external concentrations of 15 μm over the course of a 15-min reaction. These results are consistent with the presence of an active Ca2+/H+ antiport in the thylakoid membrane. Ca2+ transport across the thylakoid membrane has significant implications for chloroplast and plant Ca2+ homeostasis. We propose a model of chloroplast Ca2+ regulation whereby the activity of the Ca2+/H+ antiporter facilitates the light-dependent uptake of Ca2+ by chloroplasts and reduces stromal Ca2+ levels.
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Terpyridine copper(II) complexes Cu(L)(2)](NO3)(2) where L is (4'-phenyl)-2 2' 6' 2 `'-terpyridine (ph-tpy in 1) and 4-(1 pyrenyl)]-2 2' 6' 2'-terpyridine (py-tpy in 2) are prepared characterized and their photocytotoxic activity studied The crystal structure of complex 1 shows distorted octahedral CuN6 coordination geometry The 1 2 electrolytic and one-electron paramagnetic complexes show a visible band near 650 nm in DMF-H2O The complexes show emission band at 352 nm for 1 and 425 nm for 2 when excited at 283 and 346 nm respectively The Cu(II)-Cu(I) redox couple is observed near -0 2 V versus SCE in DMF-0 1 m TBAP The complexes are avid partial-intercalative binders to calf thymus DNA giving binding constant (K-b) values of similar to 10(6) M-1 Complex 2 with its photoactive pyrenyl moiety exhibits significant photocleavage of pUC19 DNA in red light via singlet oxygen pathway Complex 2 also exhibits significant photo-activated cytotoxicity in HeLa cancer cells in visible light giving IC50 value of 11 9 mu M while being non-toxic in dark with an IC50 value of 130 5 mu M (C) 2010 Elsevier Ltd All rights reserved
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Experimental Extended X-ray Absorption Fine Structure (EXAFS) spectra carry information about the chemical structure of metal protein complexes. However, pre- dicting the structure of such complexes from EXAFS spectra is not a simple task. Currently methods such as Monte Carlo optimization or simulated annealing are used in structure refinement of EXAFS. These methods have proven somewhat successful in structure refinement but have not been successful in finding the global minima. Multiple population based algorithms, including a genetic algorithm, a restarting ge- netic algorithm, differential evolution, and particle swarm optimization, are studied for their effectiveness in structure refinement of EXAFS. The oxygen-evolving com- plex in S1 is used as a benchmark for comparing the algorithms. These algorithms were successful in finding new atomic structures that produced improved calculated EXAFS spectra over atomic structures previously found.
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The care processes of healthcare providers are typically considered as human-centric, flexible, evolving, complex and multi-disciplinary. Consequently, acquiring an insight in the dynamics of these care processes can be an arduous task. A novel event log based approach for extracting valuable medical and organizational information on past executions of the care processes is presented in this study. Care processes are analyzed with the help of a preferential set of process mining techniques in order to discover recurring patterns, analyze and characterize process variants and identify adverse medical events.
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以类囊体膜中唯一的阴离子型磷脂一磷脂酰甘油(PG)为研究对象,应用放氧测定和富立叶红外光谱等实验方法和技术手段,对PG与光系统II (PSII)之间的相互作用进行了研究。 研究表明,PG对PSII的放氧活性产生显著影响,具有明显的浓度效应。在低浓度(2~22 mg PG/mg Chl)时对PSII的放氧活性有明显的促进作用,而在高浓度(24~40 mg PG/mg Chl)下则表现出显著的抑制作用。 PG对PSII放氧活性的影响与其引起蛋白结构的改变密切相关。结果显示,PG的作用导致PSII颗粒中蛋白质二级结构的改变,主要表现为α-螺旋、β-折叠的增加和无规卷曲的减少。 不仅如此,红外光谱的分析还表明,PG还使蛋白酪氨酸残基中的酚基构象及其周围的微极性发生改变,即在红外光谱的1620—1500 cm-1,之间芳香环骨架的伸缩振动带向高频方向变化,其吸收强度也相应增加;在3500~3100 cm. -1间出现新的氢键吸收峰。 PG除能促进PSII的放氧活性以外,还对PSII表现出新的作用,即PG可以使PSII颗粒因缺钙而受抑制的放氧活性得到恢复;外加Ca2+可使PG表现出对缺钙PSII颗粒(dc。PSII)放氧活性的更大促进作用,且随Ca2+浓度的增加,促进作用也越显著。 PG的作用也使dc。PSII蛋白的结构发生了改变,导致蛋白二级结构中a-螺旋、p_折叠结构的增加和转角、无规卷曲成分的减少,即可使PSII颗粒因缺钙而改变的蛋白结构基本得到恢复。PG还能与Ca2+形成离子对似的配合物,而这种配合物的形成可以优化缺钙PSII颗粒的功能如放氧活性等。
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光合放氧研究近十年来已有重要进展,但在该领域仍有很多重要问题待研究。本论文工作主要是对光系统氧化侧与光合放氧密切相关的组分的结构和性能进行理论和模拟研究,工作可概括如下: (一)、放氧中心结构和性能的探索。 1、对放氧中心Mn202单元与配体组氨酸、H2O和Cl等结合方式的理论研究显示:(a)、组氨酸和H20分子均可能与Mn202平面垂直,彼此保持较大的距离,且结合在不同的Mn离子上;(b)、2个H2O分子可能结合在不同Mn202单元上。 2、对Mn簇核心骨架的理论研究显示有必要引入新的Ca、Cl结合方式,以防止因两个Mn202单元线性化而导致2个H2O分子结合位点远离。 (二)、次级电子给体Tyr_z和Tyr_D的结构与功能。 对次级电子给体Tyr_z和Tyr_D进行精确量子化学研究显示:(a)、在中性条件下,Tyr_D和Tyr_z均只与组氨酸通过氢键作用;(b)、当失去电子后,结构发生明显变化,导致正电荷主要集中在组氨酸上,自由基主要集中在Tyr上;(c)、第三组分(H_20分子或羧基等)的引入使中性体系不容易给出电子;(d)、结合最新文献报导,推测Tyr_D~+和Tyr_z~+除与组氨酸作用外还可能分别与水和羧基作用。 (三)、原初电子给体的理论和模拟研究。 1、对紫细菌原初电子给体P_(870)的理论研究显示:(a)、双分子结构比单分子结构稳定;(b)、电荷分离之后,原初电子给体原有的空间结构不再是稳定的构型,它会向能量和化学活性均更低的构型转变。在光合细菌的原初电子给体P870中,这种转变可通过C3位的乙酰基旋转使其氧原子与另一个细菌叶绿素分子的镁原子相互作用使P870+•的总能量和化学活性明显降低。推测这种构型转变对于防止原初反应过程中的电荷重组、维持光能的高效转化有重要意义。提出了原初反应过程中结构动态变化的新观点,利用这一观点可对光合细菌原初反应动力学研究所观测到的慢过程及蛋白质微环境对原初电子给体和原初反应都有重要影响等实验现象给予较好的解释。 2、对光系统II原初电子给体P680的结构进行理论探讨,提出了两个叶绿素a分子平面间夹角为50.0±2.5°时能量最低的夹角模型。 3、采用N-甲基咪唑(C4H6N2)模拟生物体内的组氨酸,通过观测CCL4中的Chla与C4H6N2反应的吸收、CD和MCD光谱得到以下结论:(a)、在纯CCL4中,每个Chla处于5配位状态,Chla形成不对称的双聚体,彼此之间存在较强的偶合作用。提出两个Chla通过不等价的2个Mg-O配位键(O分别来自于C131位的酮基和C17位酯基的C=O)连接为紧密双体结构;(b)、当C4H6N2/Chla = 0.5和1时,其吸收、CD和MCD光谱均发生明显变化,两个Chla之间的偶合作用明显减弱,但此时仍为双聚体。推测C4H6N2首先取代原紧密双体结构中Mg-O酯键,进而取代Mg-O酮键,最后两个Chla分子通过两个Mg…O弱相互作用连接为松弛的双体结构,该模型与理论获得的P_(680)的结构相似。 在上述研究的基础上,提出了包括放氧中心外围配体和TyrZ在内的放氧中心结构新模型。在新结构模型中,2个H2O分子不对称地结合于“C”形结构开口端两个低价的Mn1II和Mn4III上,并保持较大距离;两个组氨酸的咪唑环通过N原子与两个高价的Mn2IV、Mn3IV结合;Cl结合于MB4TM,并与Ca相连;Ca通过O桥和COO-相连使两个Mn202单元保持特定空间构型。TyrZ通过组氨酸(D1-His190)与Mn簇作用。此外,新模型尝试着在O桥上引入质子。放氧中心结构及其邻近环境(包括TyrZ和TyrD)整体处于中性状态。 同时还提出了新的放氧机理,认为电子和质子的释放非同步进行,并首次明确提出两个水分子的不对称氧化和结构动态变化等观点。认为Ca在维持放氧中心的结构方面担负重要作用,C1与Mn离子之间的亲核作用变化是放氧中心结构变化的关键。
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IrO2/SnO2 (10%:90%, molar ratio) electrodes (ITEs) were prepared by the sol-gel method as an alternative to the electrode-position and thermal decomposition process. The electrodes were characterized by X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), atomic force microscope (AFM), cyclic voltammetry (CV) and electrochemical impedance spectra (EIS). From the results of XRD, oxide films prepared at low temperature were in amorphous state, while hydrous IrO2 crystal and cassiterite phase SnO2 were formed at 300 degreesC or even to 500 degreesC. The highly porous structure was confirmed by AFM. The electrochemical experiments demonstrated that the sol-gel method made the ITEs having a fast electron transfer process with good stability and the optimal preparation temperature was 400 degreesC for the highest electroactivity. Furthermore, the electrocatalysis of pyrocatechol on the electrodes was investigated. A quasi-reversible process occurred and a linear range over three orders magnitude (1 x 10(-2) - 10 mM) was obtained by differential pulse voltammetry (DPV). Meanwhile the detection limit of pyrocatechol was 5 x 10(-3) mM. This study indicated that the sol-gel method was an appropriate route to prepare the IrO2/SnO2 electrodes for the electrocatalytic of pyrocatechol.
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PS I, PS II and light-harvesting complexes (LHC) in oxygen evolving photosynthetic organisms were reviewed. These organisms include cyanobacteria, red algae, brown algae, diatoms, chrysophytes, dinophytes, xanthophytes, crypophytes, green algae and green plants. The diversity of pigment-protein complexes that fuel the conversion of radiant energy to chemical bond energy was highlighted, and the evolutionary relationships among the LHC structural polypeptides and the characteristics of the fluorescence emission of PS I at 77 K was discussed.
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Los aportes teóricos y aplicados de la complejidad en economía han tomado tantas direcciones y han sido tan frenéticos en las últimas décadas, que no existe un trabajo reciente, hasta donde conocemos, que los compile y los analice de forma integrada. El objetivo de este proyecto, por tanto, es desarrollar un estado situacional de las diferentes aplicaciones conceptuales, teóricas, metodológicas y tecnológicas de las ciencias de la complejidad en la economía. Asimismo, se pretende analizar las tendencias recientes en el estudio de la complejidad de los sistemas económicos y los horizontes que las ciencias de la complejidad ofrecen de cara al abordaje de los fenómenos económicos del mundo globalizado contemporáneo.
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The genus Saccharum belongs to Poaceae family. Sugarcane has become important monocultures in Brazil due to their products: ethanol and sugar. The production may change between different regions from Brazil. This difference is related to soil, climatic conditions and temperature that promotes oxidative stress that may induce an early flowering. The aim of this work was to identify the effects of oxidative stress. In order to analyse this, sugarcane plants were submitted to oxidative stress using hydrogen peroxide. After this treatment, the oxidative stress were analyzed Then, the plant responses were analyzed under different approaches, using morphophysiological, biochemical and molecular tools. Thus, sugarcane plants were grown under controlled conditions and until two months they were subjected first to a hydroponics condition for 24 hours in order to acclimation. After this period, these plants were submitted to oxidative stresse using 0 mM, 10 mM, 20 mM and 30 mM hydrogen peroxide during 8 hours. The histomorphometric analysis allowed us to verify that both root and leaf tissues had a structural changes as it was observed by the increased in cell volume, lignin accumulation in cell walls. Besides, this observation suggested that there was a change in redox balance. Also, it was analyzed the activity of the SOD, CAT and APX enzymes. It was observed an increase in the SOD activity in roots and it was also observed a lipid peroxidation in leaves and roots. Then, in order to identify proteins that were differently expressed in this conditions it was used the proteomic tool either by bidimensional gel or by direct sequencing using the Q-TOF EZI. The results obtained with this approach identified more than 3.000 proteins with the score ranging from 100-5000 ions. Some of the proteins identified were: light Harvesting; oxygenevolving; Thioredoxin; Ftsh-like protein Pftf precusor; Luminal-binding protein; 2 cys peroxiredoxin e Lipoxygenase. All these proteins are involved in oxidative stress response, photsynthetic pathways, and some were classified hypothetical proteins and/or unknown (30% of total). Thus, our data allows us to propose that this treatment induced an oxidative stress and the plant in response changed its physiological process, it made changes in tissue, changed the redox response in order to survival to this new condition