Is The amphibian tree of life really fatally flawed?

Wiens (2007, Q. Rev. Biol. 82, 55-56) recently published a severe critique of Frost et al.'s (2006, Bull. Am. Mus. Nat. Hist. 297, 1-370) monographic study of amphibian systematics, concluding that it is a disaster and recommending that readers simply ignore this study. Beyond the hyperbole, Wiens raised four general objections that he regarded as fatal flaws: (1) the sampling design was insufficient for the generic changes made and taxonomic changes were made without including all type species; (2) the nuclear gene most commonly used in amphibian phylogenetics, RAG-1, was not included, nor were the morphological characters that had justified the older taxonomy; (3) the analytical method employed is questionable because equally weighted parsimony assumes that all characters are evolving at equal rates; and (4) the results were at times clearly erroneous, as evidenced by the inferred non-monophyly of marsupial frogs. In this paper we respond to these criticisms. In brief: (1) the study of Frost et al. did not exist in a vacuum and we discussed our evidence and evidence previously obtained by others that documented the non-monophyletic taxa that we corrected. Beyond that, we agree that all type species should ideally be included, but inclusion of all potentially relevant type species is not feasible in a study of the magnitude of Frost et al. and we contend that this should not prevent progress in the formulation of phylogenetic hypotheses or their application outside of systematics. (2) Rhodopsin, a gene included by Frost et al. is the nuclear gene that is most commonly used in amphibian systematics, not RAG-1. Regardless, ignoring a study because of the absence of a single locus strikes us as unsound practice. With respect to previously hypothesized morphological synapomorphies, Frost et al. provided a lengthy review of the published evidence for all groups, and this was used to inform taxonomic decisions. We noted that confirming and reconciling all morphological transformation series published among previous studies needed to be done, and we included evidence from the only published data set at that time to explicitly code morphological characters (including a number of traditionally applied synapomorphies from adult morphology) across the bulk of the diversity of amphibians (Haas, 2003, Cladistics 19, 23-90). Moreover, the phylogenetic results of the Frost et al. study were largely consistent with previous morphological and molecular studies and where they differed, this was discussed with reference to the weight of evidence. (3) The claim that equally weighted parsimony assumes that all characters are evolving at equal rates has been shown to be false in both analytical and simulation studies. (4) The claimed strong support for marsupial frog monophyly is questionable. Several studies have also found marsupial frogs to be non-monophyletic. Wiens et al. (2005, Syst. Biol. 54, 719-748) recovered marsupial frogs as monophyletic, but that result was strongly supported only by Bayesian clade confidence values (which are known to overestimate support) and bootstrap support in his parsimony analysis was < 50%. Further, in a more recent parsimony analysis of an expanded data set that included RAG-1 and the three traditional morphological synapomorphies of marsupial frogs, Wiens et al. (2006, Am. Nat. 168, 579-596) also found them to be non-monophyletic.Although we attempted to apply the rule of monophyly to the naming of taxonomic groups, our phylogenetic results are largely consistent with conventional views even if not wth the taxonomy current at the time of our writing. Most of our taxonomic changes addressed examples of non-monophyly that had previously been known or suspected (e.g., the non-monophyly of traditional Hyperoliidae, Microhylidae, Hemiphractinae, Leptodactylidae, Phrynobatrachus, Ranidae, Rana, Bufo; and the placement of Brachycephalus within Eleutherodactylus, and Lineatriton within Pseudoeurycea), and it is troubling that Wiens and others, as evidenced by recent publications, continue to perpetuate recognition of non-monophyletic taxonomic groups that so profoundly misrepresent what is known about amphibian phylogeny. (C) The Willi Hennig Society 2007.

Diversidade e distribuição espaço-temporal de anuros em região com pronunciada estação seca no sudeste do Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Diversidade e ocorrência temporal da anurofauna (Amphibia, Anura) em São José dos Pinhais, Paraná, Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Amphibia, Anura, coastal zone, State of Piaui, northeastern Brazil.

Amphibians are an important component of terrestrial and aquatic freshwater communities worldwide. Especially to the Northern coastal zone of Brazil, the knowledge about amphibian communities is very scarce. We have studied amphibian assemblages along the coastal strip zone of the state of Piaui for two years, covering a distance of ca. 70 km. It was possible to prepare a list of 21 anurans from 6 families (Microhylidae, Hylidae, Leptodactylidae, Cycloramphidae, Leiuperidae, and Bufonidae). All species are common and widely distributed in Brazilian territory, mainly on the Caatinga biome. The results are important to amplify the knowledge on the biodiversity found at the coastal zone of the state of Piaui.

Habitat heterogeneity and use of physical acoustic space in anuran communities in southeastern Brazil.

We intended to verify if structural and physiognomical characteristics of water bodies influence on the degree of overlap among calling sites of 23 anurans species, if anuran species use different calling sites in different water bodies, and if there is some relationship between the degree of advertisement call (based on seven call features) and calling site differentiation. Then, we determined calling sites (based in four variables) and recorded the advertisement call for anuran species that occurred in 10 water bodies of northwestern São Paulo State. We also determined the environmental heterogeneity (based in four environmental descriptors) for each water body. Males of most species used similar calling sites in each water body, probably because of the high uniformity of the environment, as a consequence of agricultural impacts on edge vegetation of the studied ponds. Most species (18 out of 19 species) called from different sites in the ponds where they occurred, which can be associated with differences in horizontal and vertical distribution of vegetation in the studied ponds. From the 19 species analyzed, only males of Pseudopaludicola aff. saltica called in sites with the same characteristics in different ponds. Advertisement call of Hylidae species was more similar to each other than were Leiuperidae and Leptodactylidae among themselves. The aquatic/terrestrial anurans (Bufonidae, Leiuperidae, Leptodactylidae and Microhylidae) occupied similar calling sites but presented quite distinct advertisement calls, while Hylidae species presented an inverse pattern: a high similarity on advertisement call features but used different calling sites, which indicates a niche complementarity between physical (calling site use) and acoustic (advertisement call) space use.

Habitat heterogeneity and use of physical and acoustic space in anuran communities in Southeastern Brazil

Habitat heterogeneity and use of physical and acoustic space in anuran communities in Southeastern Brazil. We intended to verify if structural and physiognomical characteristics of water bodies influence on the degree of overlap among calling sites of 23 anurans species, if anuran species use different calling sites in different water bodies, and if there is some relationship between the degree of advertisement call (based on seven call features) and calling site differentiation. Then, we determined calling sites (based in four variables) and recorded the advertisement call for anuran species that occurred in 10 water bodies of northwestern São Paulo State. We also determined the environmental heterogeneity (based in four environmental descriptors) for each water body. Males of most species used similar calling sites in each water body, probably because of the high uniformity of the environment, as a consequence of agricultural impacts on edge vegetation of the studied ponds. Most species (18 out of 19 species) called from different sites in the ponds where they occurred, which can be associated with differences in horizontal and vertical distribution of vegetation in the studied ponds. From the 19 species analyzed, only males of Pseudopaludicola aff. saltica called in sites with the same characteristics in different ponds. Advertisement call of Hylidae species was more similar to each other than were Leiuperidae and Leptodactylidae among themselves. The aquatic/terrestrial anurans (Bufonidae, Leiuperidae, Leptodactylidae and Microhylidae) occupied similar calling sites but presented quite distinct advertisement calls, while Hylidae species presented an inverse pattern: a high similarity on advertisement call features but used different calling sites, which indicates a niche complementarity between physical (calling site use) and acoustic (advertisement call) space use. © 2008 Departamento de Ciências Biológicas.

Diversidade e uso do habitat de comunidades de anfíbios anuros em Lençóis Paulista, Estado de São Paulo

Pós-graduação em Ciências Biológicas (Zoologia) - IBB

Estratégias reprodutivas em uma comunidade de anuros no Pantanal, estado de Mato Grosso do Sul, Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Dimorfismo sexual em Dasypops schirchi (Miranda-Ribeiro, 1924): aspectos morfológicos

Amphibians exhibit great morphological plasticity of habitat and life history. This heterogeneity contributes to the frequency of occurrence and diversity of sexual dimorphism (shape or size) is large. Dasypops schirchi is a species belonging to the subfamily and family Gastrophryninae Microhylidae and this endemic and endangered. Generally, very little is known about D. schirchi, much in part to its habit of living and cryptic small geographical distribution. In order to detect and characterize elements sexually dimorphic in this species was a survey of specimens of D. schirchi in major national zoological collections. We analyzed 16 morphometric variables were also searched and secondary sexual characters non-morphometric. Statistical analysis of the morphometric data, the results showed a clear distinction between males and females of D. schirchi, secondary sexual characters nonmorphometric were also found

Levantamento da anurofauna da Escola do Meio Ambiente, Botucatu-SP

O objetivo do presente estudo foi realizar o inventário da anurofauna, assim como investigar a distribuição espacial, temporal e a abundância relativa das espécies localizadas em um mosaico vegetacional na região de Botucatu, SP (22 º55’ 23’’S e 45 º27’ 28’’W). A área estudada situa-se na Escola do Meio Ambiente, possui aproximadamente 12 hectares e uma grande heterogeneidade de habitats. Os dados foram obtidos entre outubro de 2006 a outubro de 2007 e entre setembro de 2009 e setembro de 2010, totalizando 29 dias de campo. Os métodos utilizados foram busca ativa e armadilhas de interceptação e queda. Foram identificadas 26 espécies de anfíbios de cinco famílias: Bufonidae (2 sp), Hylidae (15), Leptodactylidae (6), Leiuperidae (2) e Microhylidae (1), distribuídas em três grandes áreas: área aberta, mata e borda de mata. Os ambientes de área aberta foram utilizados pela maioria dos anfíbios (n=21), enquanto a borda de mata apresentou a menor riqueza (n=5). Treze espécies foram observadas na mata. As espécies Physalaemus cuvieri, e Leptodacylus furnarius foram as mais generalistas, sendo encontradas em seis e cinco dos sete ambientes estudados, respectivamente. Entre as espécies estudadas, Leptodactylus bokermanni, foi a única registrada em apenas um dos ambientes (borda da mata). As espécies mais abundantes na comunidade foram Dendropsophus nanus representando 13%, seguida de Dendropsophus sanborni e Scinax fuscomarginatus ambas com 12 % dos indivíduos. As menos abundantes foram: Rhinella icterica, Leptodactylus mystacinus e Eupemphix nattereri onde cada uma contribuiu com 0,2% dos indivíduos registrados. A grande maioria das espécies foi registrada no período quente e chuvoso (setembro a março), com exceção da espécie Scinax hiemalis que esteve presente na época fria e seca. Já Hypsiboas ...(Resumo completo, clicar acesso eletrônico abaixo)

Isolation of polymorphic tetranucleotide microsatellite markers for the ornate nursery frog Cophixalus ornatus

We have isolated 18 polymorphic microsatellite loci for Cophixalus ornatus from genomic libraries enriched for (AAAG)(n), (AACC)(n) and (AAGG)(n) repetitive elements. The number of alleles ranges from five to 22 per locus with the observed heterozygosity ranging from 0.10 to 0.92. These markers will be useful for the analysis of population structure in C. ornatus and testing alternative models of speciation.