Identificação e caracterização de elementos retrotransponíveis da família Rex do genoma de espécies do genêro Leporinus SPIX, 1829 (Teleostei: Anostomidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Characterization and genome organization of a repetitive element associated with the nucleolus organizer region in leporinuselongatus (anostomidae: Characiformes)

Chromosome mapping and studies of the genomic organization of repetitive DNA sequences provide valuable insights that enhance our evolutionary and structural understanding of these sequences, as well as identifying chromosomal rearrangements and sex determination. This study investigated the occurrence and organization of repetitive DNA sequences in Leporinus elongatus using restriction enzyme digestion and the mapping of sequences by chromosomal fluorescence in situ hybridization (FISH). A 378-bp fragment with a 54.2% GC content was isolated after digestion with the SmaI restriction enzyme. BLASTN search found no similarity with previously described sequences, so this repetitive sequence was named LeSmaI. FISH experiments were conducted using L. elongatus and other Anostomidae species, i.e. L. macrocephalus,L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii, S. isognathus, and Abramites hypselonotus which detected signals that were unique to male and female L. elongatus individuals. Double-FISH using LeSmaI and 18S rDNA showed that LeSmaI was located in a nucleolus organizer region (NOR) in the male and female metaphases of L. elongatus. This report also discusses the role of repetitive DNA associated with NORs in the diversification of Anostomidae species karyotypes. Copyright © 2012 S. Karger AG, Basel.

Chromosome mapping of repetitive sequences in Anostomidae species: Implications for genomic and sex chromosome evolution

Background: Members of the Anostomidae family provide an interesting model system for the study of the influence of repetitive elements on genome composition, mainly because they possess numerous heterochromatic segments and a peculiar system of female heterogamety that is restricted to a few species of the Leporinus genus. The aim of this study was to isolate and identify important new repetitive DNA elements in Anostomidae through restriction enzyme digestion, followed by cloning, characterisation and chromosome mapping of this fragment. To identify repetitive elements in other Leporinus species and expand on studies of repetitive elements in Anostomidae, hybridisation experiments were also performed using previously described probes of LeSpeI repetitive elements. Results: The 628-base pair (bp) LeSpeII fragment was hybridised to metaphase cells of L. elongatus individuals as well as those of L. macrocephalus, L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii and S. isognathus. In L. elongatus, both male and female cells contained small clusters of LeSpeII repetitive elements dispersed on all of the chromosomes, with enrichment near most of the terminal portions of the chromosomes. In the female sex chromosomes of L. elongatus (Z2,Z2/W1W 2), however, this repeated element was absent. In the remaining species, a dispersed pattern of hybridisation was observed on all chromosomes irrespective of whether or not they were sex chromosomes. The repetitive element LeSpeI produced positive hybridisations signals only in L. elongatus, L. macrocephalus and L. obtusidens, i.e., species with differentiated sex chromosomes. In the remaining species, the LeSpeI element did not produce hybridisation signals. Conclusions: Results are discussed in terms of the effects of repetitive sequences on the differentiation of the Anostomidae genome, especially with respect to sex chromosome evolution. LeSpeII showed hybridisation patterns typical of Long Interspersed Elements (LINEs). The differential distribution of this element may be linked to sex chromosome differentiation in L. elongatus species. The relationship between sex chromosome specificity and the LeSpeI element is confirmed in the species L. elongatus, L. macrocephalus and L. obtusidens. © 2012 da Silva et al.; licensee BioMed Central Ltd.

Densidade de estocagem e restrição alimentar em juvenis de piapara

The effects of stocking density and food restriction in juvenile piapara (Leporinus elongatus) were studied by two experiments. In the first, 88 piaparas juveniles were stocked in three densities (0.13, 0.20 and 0.40 fish L-1) for 70 days. Were evaluated: weight gain, average consumption, specific growth rate and feed conversion. The experiment was conducted in completely randomized design with three treatments (0.13, 0.20 and 0.40 fish L-1) and four replicates. In the second experiment, 84 fish were divided into three treatments (RBD, with 4 replicates): control group (daily food); FDS group (animals fed on weekends) and Res 21 group (animals subjected to food restriction for 21 days). Highest stocking density resulted highest biomass produced. Fish subjected to food restriction for 21 days and animals fed on weekends group, displayed full compensatory growth.

Biodiversidade dos parasitas de peixes provenientes do rio Sapucaí-Mirim, Estado de São Paulo, Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The contrasting role of heterochromatin in the differentiation of sex chromosomes: an overview from Neotropical fishes

During the evolutionary process of the sex chromosomes, a general principle that arises is that cessation or a partial restriction of recombination between the sex chromosome pair is necessary. Data from phylogenetically distinct organisms reveal that this phenomenon is frequently associated with the accumulation of heterochromatin in the sex chromosomes. Fish species emerge as excellent models to study this phenomenon because they have much younger sex chromosomes compared to higher vertebrates and many other organisms making it possible to follow their steps of differentiation. In several Neotropical fish species, the heterochromatinization, accompanied by amplification of tandem repeats, represents an important step in the morphological differentiation of simple sex chromosome systems, especially in the ZZ/ZW sex systems. In contrast, multiple sex chromosome systems have no additional increase of heterochromatin in the chromosomes. Thus, the initial stage of differentiation of the multiple sex chromosome systems seems to be associated with proper chromosomal rearrangements, whereas the simple sex chromosome systems have an accumulation of heterochromatin. In this review, attention has been drawn to this contrasting role of heterochromatin in the differentiation of simple and multiple sex chromosomes of Neotropical fishes, highlighting their surprising evolutionary dynamism.

Chromosome mapping of retrotransposable elements Rex1 and Rex3 in Leporinus Spix, 1829 species (Characiformes: Anostomidae) and its relationships among heterochromatic segments and W sex chromosome

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Sustitución del gen nirA entre cianobacterias termofílicas. Clonación, expresión y purificación de la nitrito reductasa de Thermosynechococcus elongatus BP-1

220 p.

A study on the growth of Pseudotolithus elongatus, Chrysichthys nigrodigitatus and Cynoglossus goreensis occurring in the Cross River Estuary

Samples of Pseudotolithus elongatus, Chrysichthys nigrodigitatus and Cynoglosus goreensis obtained from the Cross River Estuary (which is most probably the largest estuary water system along the coast of West Africa) between January 1980 and May 1981 were evaluated on basis of population dynamic analytical method postulated by Pauly (1980) for tropical fish stocks. Growth parameters were obtained for the fish species. Wherever possible, these results were compared to those obtained by Longhurst (1964d) and LeGuen (1971) in other West African waters. On the whole, results obtained in this study tend to indicate that the growth of the croaker, bagrid catfish and the sole in the Cross River Estuary is allometric, the third and fourth year-classes of P. elongatus the second and third class-year of C. nigrodigitatus and the fourth, fifth and sixth year classes of C. goreensis dominated in the age distribution of these fish species

Prey preference of lingcod (Ophiodon elongatus), a top marine predator: implications for ecosystem-based fisheries management

Many highly exploited ecosystems are managed on the basis of single-species demographic information. This management approach can exacerbate tensions among stakeholders with competing interests who in turn rely on data with notoriously high variance. In this case study, an application of diet and dive survey data was used to describe the prey preference of lingcod (Ophiodon elongatus) in a predictive framework on nearshore reefs off Oregon. The lingcod is a large, fast-growing generalist predator of invertebrates and fishes. In response to concerns that lingcod may significantly reduce diminished populations of rockfishes (Sebastes spp.), the diets of 375 lingcod on nearshore reefs along the Oregon Coast were compared with estimates of relative prey availability from dive surveys. In contrast to the transient pelagic fishes that comprised 46% of lingcod diet by number, rockfishes comprised at most 4.7% of prey items. Rockfishes were the most abundant potential prey observed in dive surveys, yet they were the least preferred. Ecosystem-based fisheries management (EBFM) requires information about primary trophic relationships, as well as relative abundance and distribution data for multiple species. This study shows that, at a minimum, predation relative to prey availability must be considered before predator effects can be understood in a management context.

Mortality of Lingcod, Ophiodon elongatus, Related to Capture by Hook and Line

Lingcod, Ophiodon elongatus, were captured by hook and line (sport rod and reel gear and commercial troll gear) at two coastal California locations and held in aquaria for periods of up to 32 days for evaluation of capture-related mortality. Three of 69 lingcod captured with rod and reel gear died of capture-related injuries (4.3% mortality; 95% confidence interval 0–9.3%). None of 15 lingcod captured with troll gear died of capture-related injuries. Due to the low overall mortality rate, there were no discernable trends in mortality with respect to sex, length, depth of capture, and terminal tackle (bait vs. lure). Of 38 fish with visible hooking wounds, 26 showed evidence of wound healing during the holding period.

Submersible Observations on Lingcod, Ophiodon elongatus, Nesting Below 30 m off Sitka, Alaska

A research submersible was used to delineate the depth distribution of lingcod, Ophiodon elongatus, nests (egg masses) below 30 m. Although nests were not seen deeper than 97 m, behavior and dark coloration distinctive of nest-guarding lingcod were seen as deep as 126 m. Males guarding nests were distinctly colored, i.e., dark with little or no mottling, and most were obviously scarred. Two types of guarding behaviors were observed: 1) Males lying directly on or beside the nest and remaining nearly motionless unless touched and 2) males lying on a sentry post and defending the nest when other fish swam close.

Length-weight relationships and relative conditions of two sciaenids Otolithes cuvieri Trewavas and Johnius elongatus Mohan from the Karachi coast

Estimates of length-weight relationship in Otolithes cuvieri justify separate equations for males (log W =-5.0100+3.1365 log L) and females (log W =-5.2000+3.1006 log L). Relative condition factor "Kn" was found to be 0.877-1.946 in males and 0.879-1.328 in females. High "Kn" values during March to September at 180-220 mm TL in either sexes are indicative of the maturation of gonads. Separate equations for length-weight relationship are also justified for males (log W = -5.1126 + 3.0690 log L) and females (log W = -5.6400 + 3.3070 log L) of Johnius elongatus . "Kn" values were found to be 0.924-1.894 for males and 0.894-1.087 for females. High "Kn" values during January-May and August-September at 130 mm TL onward are indicative of gonadal maturation.

Some aspects of reproductive biology of two sciaenids, Otolithes cuvieri Trewavas and Johnius elongatus Mohan: maturation, spawning, sex ratio and fecundity

The gonads of Otolithes cuvieri and Johnius elongatus are described in seven maturity stages. O. Cuvieri spawns once a year from April to September as evidence by ova diameter frequency distribution and GSI values. 50% maturity is attained at 210mm TL in males and 200mm TL in females. Fecundity ranged from 2387 to 104379 with a mean value of 33502. Log-Log relationship between fecundity and total lenght, body weight and ovary weight were determined. An overall sex ratio of 1.54:1.00 was unequal in favour of males. Johnius elongatus spawns twice a year from January-February to Aprile-May and from August to October as evidence by ova diameter frequency distribution and GSI values. 50% maturity is attained at 140-143mm TL in both sexes. Fecundity ranged from 4238 to 167669 with a mean value of 42818. Log-Log relationship between fecundity and total lenght, body weign and ovary weight were determined. An overall sex ratio of 1.00:1.20 was unequal in favour of females.