Estimation and prediction of parameters and breeding values in soybean using REML/BLUP and Least Squares

The aim of this study was to compare REML/BLUP and Least Square procedures in the prediction and estimation of genetic parameters and breeding values in soybean progenies. F(2:3) and F(4:5) progenies were evaluated in the 2005/06 growing season and the F(2:4) and F(4:6) generations derived thereof were evaluated in 2006/07. These progenies were originated from two semi-early, experimental lines that differ in grain yield. The experiments were conducted in a lattice design and plots consisted of a 2 m row, spaced 0.5 m apart. The trait grain yield per plot was evaluated. It was observed that early selection is more efficient for the discrimination of the best lines from the F(4) generation onwards. No practical differences were observed between the least square and REML/BLUP procedures in the case of the models and simplifications for REML/BLUP used here.

Optimization of wood flour acetylation by factorial design and partial least squares regression

Acetylation was performed to reduce the polarity of wood and increase its compatibility with polymer matrices for the production of composites. These reactions were performed first as a function of acetic acid and anhydride concentration in a mixture catalyzed by sulfuric acid. A concentration of 50%/50% (v/v) of acetic acid and anhydride was found to produced the highest conversion rate between the functional groups. After these reactions, the kinetics were investigated by varying times and temperatures using a 3² factorial design, and showed time was the most relevant parameter in determining the conversion of hydroxyl into carbonyl groups.

Nonlinear model structure design and construction using orthogonal least squares and D-optimality design

A very efficient learning algorithm for model subset selection is introduced based on a new composite cost function that simultaneously optimizes the model approximation ability and model robustness and adequacy. The derived model parameters are estimated via forward orthogonal least squares, but the model subset selection cost function includes a D-optimality design criterion that maximizes the determinant of the design matrix of the subset to ensure the model robustness, adequacy, and parsimony of the final model. The proposed approach is based on the forward orthogonal least square (OLS) algorithm, such that new D-optimality-based cost function is constructed based on the orthogonalization process to gain computational advantages and hence to maintain the inherent advantage of computational efficiency associated with the conventional forward OLS approach. Illustrative examples are included to demonstrate the effectiveness of the new approach.

Análise de séries temporais de coordenadas estimadas com GPS: uma proposta metodológica para detecção, remoção e recuperação de efeitos sazonais

GPS active networks are more and more used in geodetic surveying and scientific experiments, as water vapor monitoring in the atmosphere and lithosphere plate movement. Among the methods of GPS positioning, Precise Point Positioning (PPP) has provided very good results. A characteristic of PPP is related to the modeling and/or estimation of the errors involved in this method. The accuracy obtained for the coordinates can reach few millimeters. Seasonal effects can affect such accuracy if they are not consistent treated during the data processing. Coordinates time series analyses have been realized using Fourier or Harmonics spectral analyses, wavelets, least squares estimation among others. An approach is presented in this paper aiming to investigate the seasonal effects included in the stations coordinates time series. Experiments were carried out using data from stations Manaus (NAUS) and Fortaleza (BRFT) which belong to the Brazilian Continuous GPS Network (RBMC). The coordinates of these stations were estimated daily using PPP and were analyzed through wavelets for identification of the periods of the seasonal effects (annual and semi-annual) in each time series. These effects were removed by means of a filtering process applied in the series via the least squares adjustment (LSQ) of a periodic function. The results showed that the combination of these two mathematical tools, wavelets and LSQ, is an interesting and efficient technique for removal of seasonal effects in time series.

Análise de séries temporais de coordenadas estimadas com gps: Uma proposta metodológica para detecção, remoção e recuperação de efeitos sazonais

GPS active networks are more and more used in geodetic surveying and scientific experiments, as water vapor monitoring in the atmosphere and lithosphere plate movement. Among the methods of GPS positioning, Precise Point Positioning (PPP) has provided very good results. A characteristic of PPP is related to the modeling and / or estimation of the errors involved in this method. The accuracy obtained for the coordinates can reach few millimeters. Seasonal effects can affect such accuracy if they are not consistent treated during the data processing. Coordinates time series analyses have been realized using Fourier or Harmonics spectral analyses, wavelets, least squares estimation among others. An approach is presented in this paper aiming to investigate the seasonal effects included in the stations coordinates time series. Experiments were carried out using data from stations Manaus (NAUS) and Fortaleza (BRFT) which belong to the Brazilian Continuous GPS Network (RBMC). The coordinates of these stations were estimated daily using PPP and were analyzed through wavelets for identification of the periods of the seasonal effects (annual and semi-annual) in each time series. These effects were removed by means of a filtering process applied in the series via the least squares adjustment (LSQ) of a periodic function. The results showed that the combination of these two mathematical tools, wavelets and LSQ, is an interesting and efficient technique for removal of seasonal effects in time series.

The influence of subpixel measurement on digital camera calibration

The aim of this work is to evaluate the influence of point measurements in images, with subpixel accuracy, and its contribution in the calibration of digital cameras. Also, the effect of subpixel measurements in 3D coordinates of check points in the object space will be evaluated. With this purpose, an algorithm that allows subpixel accuracy was implemented for semi-automatic determination of points of interest, based on Fõrstner operator. Experiments were accomplished with a block of images acquired with the multispectral camera DuncanTech MS3100-CIR. The influence of subpixel measurements in the adjustment by Least Square Method (LSM) was evaluated by the comparison of estimated standard deviation of parameters in both situations, with manual measurement (pixel accuracy) and with subpixel estimation. Additionally, the influence of subpixel measurements in the 3D reconstruction was also analyzed. Based on the obtained results, i.e., on the quantification of the standard deviation reduction in the Inner Orientation Parameters (IOP) and also in the relative error of the 3D reconstruction, it was shown that measurements with subpixel accuracy are relevant for some tasks in Photogrammetry, mainly for those in which the metric quality is of great relevance, as Camera Calibration.

Estudo de métodos para classificação e localização precisa de padrões usando um sistema de luz estruturada

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Entropia conjunta de espaço e reqüência espacial estimada através da discriminação de estímulos espaciais com luminância e cromaticidade moduladas por funções de Gábor: implicações para o processamento paralelo de informação no sistema visual humano

O objetivo deste estudo foi estimar a entropia conjunta do sistema visual humano no domínio do espaço e no domínio das freqüências espaciais através de funções psicométricas. Estas foram obtidas com testes de discriminação de estímulos com luminância ou cromaticidade moduladas por funções de Gábor. A essência do método consistiu em avaliar a entropia no domínio do espaço, testando-se a capacidade do sujeito em discriminar estímulos que diferiam apenas em extensão espacial, e avaliar a entropia no domínio das freqüências espaciais, testando-se a capacidade do sujeito em discriminar estímulos que diferiam apenas em freqüência espacial. A entropia conjunta foi calculada, então, a partir desses dois valores individuais de entropia. Três condições visuais foram estudadas: acromática, cromática sem correção fina para eqüiluminância e cromática com correção para eqüiluminância através de fotometria com flicker heterocromático. Quatro sujeitos foram testados nas três condições, dois sujeitos adicionais foram testados na condição cromática sem eqüiluminância fina e um sétimo sujeito também fez o teste acromático. Todos os sujeitos foram examinados por oftalmologista e considerados normais do ponto de vista oftálmico, não apresentando relato, sintomas ou sinais de disfunções visuais ou de moléstias potencialmente capazes de afetar o sistema visual. Eles tinham acuidade visual normal ou corrigida de no mínimo 20/30. O trabalho foi aprovado pela Comissão de Ética em Pesquisa do Núcleo de Medicina Tropical da UFPA e obedeceu às recomendações da Declaração de Helsinki. As funções de Gábor usadas para modulação de luminância ou cromaticidade compreenderam redes senoidais unidimensionais horizontais, moduladas na direção vertical, dentro de envelopes gaussianos bidimensionais cuja extensão espacial era medida pelo desvio padrão da gaussiana. Os estímulos foram gerados usando-se uma rotina escrita em Pascal num ambiente Delphi 7 Enterprise. Foi utilizado um microcomputador Dell Precision 390 Workstation e um gerador de estímulos CRS VSG ViSaGe para exibir os estímulos num CRT de 20”, 800 x 600 pixels, 120 Hz, padrão RGB, Mitsubishi Diamond Pro 2070SB. Nos experimentos acromáticos, os estímulos foram gerados pela modulação de luminância de uma cor branca correspondente à cromaticidade CIE1931 (x = 0,270; y = 0,280) ou CIE1976 (u’ = 0,186; v’= 0,433) e tinha luminância média de 44,5 cd/m2. Nos experimentos cromáticos, a luminância média foi mantida em 15 cd/m2 e foram usadas duas series de estímulos verde-vermelhos. Os estímulos de uma série foram formados por duas cromaticidades definidas no eixo M-L do Espaço de Cores DKL (CIE1976: verde, u’=0,131, v’=0,380; vermelho, u’=0,216, v’=0,371). Os estímulos da outra série foram formados por duas cromaticidades definidas ao longo de um eixo horizontal verde-vermelho definido no Espaço de Cores CIE1976 (verde, u’=0,150, v’=0,480; vermelho, u’=0,255, v’=0,480). Os estímulos de referência eram compostos por redes de três freqüências espaciais diferentes (0,4, 2 e 10 ciclos por grau) e envelope gaussiano com desvio padrão de 1 grau. Os estímulos de testes eram compostos por uma entre 19 freqüências espaciais diferentes em torno da freqüência espacial de referência e um entre 21 envelopes gaussianos diferentes com desvio padrão em torno de 1 grau. Na condição acromática, foram estudados quatro níveis de contraste de Michelson: 2%, 5%, 10% e 100%. Nas duas condições cromáticas foi usado o nível mais alto de contraste agregado de cones permitidos pelo gamut do monitor, 17%. O experimento consistiu numa escolha forçada de dois intervalos, cujo procedimento de testagem compreendeu a seguinte seqüência: i) apresentação de um estímulo de referência por 1 s; ii) substituição do estímulo de referência por um fundo eqüiluminante de mesma cromaticidade por 1 s; iii) apresentação do estímulo de teste também por 1 s, diferindo em relação ao estímulo de referência seja em freqüência espacial, seja em extensão espacial, com um estímulo sonoro sinalizando ao sujeito que era necessário responder se o estímulo de teste era igual ou diferente do estímulo de referência; iv) substituição do estímulo de teste pelo fundo. A extensão espacial ou a freqüência espacial do estímulo de teste foi mudada aleatoriamente de tentativa para tentativa usando o método dos estímulos constantes. Numa série de 300 tentativas, a freqüencia espacial foi variada, noutra série também de 300 tentativas, a extensão espacial foi variada, sendo que cada estímulo de teste em cada série foi apresentado pelo menos 10 vezes. A resposta do indivíduo em cada tentativa era guardada como correta ou errada para posterior construção das curvas psicométricas. Os pontos experimentais das funções psicométricas para espaço e freqüência espacial em cada nível de contraste, correspondentes aos percentuais de acertos, foram ajustados com funções gaussianas usando-se o método dos mínimos quadrados. Para cada nível de contraste, as entropias para espaço e freqüência espacial foram estimadas pelos desvios padrões dessas funções gaussianas e a entropia conjunta foi obtida multiplicando-se a raiz quadrada da entropia para espaço pela entropia para freqüência espacial. Os valores de entropia conjunta foram comparados com o mínimo teórico para sistemas lineares, 1/4π ou 0,0796. Para freqüências espaciais baixas e intermediárias, a entropia conjunta atingiu níveis abaixo do mínimo teórico em contrastes altos, sugerindo interações não lineares entre dois ou mais mecanismos visuais. Este fenômeno occorreu em todas as condições (acromática, cromática e cromática eqüiluminante) e foi mais acentuado para a frequência espacial de 0,4 ciclos / grau. Uma possível explicação para este fenômeno é a interação não linear entre as vias visuais retino-genículo-estriadas, tais como as vias K, M e P, na área visual primária ou em níveis mais altos de processamento neural.

Comparison of partial least squares regression and principal component regression for pelvic shape prediction.

This paper studied two different regression techniques for pelvic shape prediction, i.e., the partial least square regression (PLSR) and the principal component regression (PCR). Three different predictors such as surface landmarks, morphological parameters, or surface models of neighboring structures were used in a cross-validation study to predict the pelvic shape. Results obtained from applying these two different regression techniques were compared to the population mean model. In almost all the prediction experiments, both regression techniques unanimously generated better results than the population mean model, while the difference on prediction accuracy between these two regression methods is not statistically significant (α=0.01).

A proposal for the metrological characterization of circular features with digital optical machines

This paper aims to analyze the different adjustment methods commonly used to characterize indirect metrology circular features: least square circle, minimum zone circle, maximum inscribed circle and minimum circumscribed circle. The analysis was performed from images obtained by digital optical machines. The calculation algorithms, self-developed, have been implemented in Matlab® and take into consideration as study variables: the amplitude of angular sector of the circular feature, its nominal radio and the magnification used by the optical machine. Under different conditions, it was determined the radius and circularity error of different circular standards. The comparison of the results, obtained by the different methods of adjustments used, with certified values for the standards, has allowed us to determine the accuracy of each method and its scope.

Pricing-to-market for UK export sector

This thesis investigates the pricing-to-market (PTM) behaviour of the UK export sector. Unlike previous studies, this study econometrically tests for seasonal unit roots in the export prices prior to estimating PTM behaviour. Prior studies have seasonally adjusted the data automatically. This study’s results show that monthly export prices contain very little seasonal unit roots implying that there is a loss of information in the data generating process of the series when estimating PTM using seasonally-adjusted data. Prior studies have also ignored the econometric properties of the data despite the existence of ARCH effects in such data. The standard approach has been to estimate PTM models using Ordinary Least Square (OLS). For this reason, both EGARCH and GJR-EGARCH (hereafter GJR) estimation methods are used to estimate both a standard and an Error Correction model (ECM) of PTM. The results indicate that PTM behaviour varies across UK sectors. The variables used in the PTM models are co-integrated and an ECM is a valid representation of pricing behaviour. The study also finds that the price adjustment is slower when the analysis is performed on real prices, i.e., data that are adjusted for inflation. There is strong evidence of auto-regressive condition heteroscedasticity (ARCH) effects – meaning that the PTM parameter estimates of prior studies have been ineffectively estimated. Surprisingly, there is very little evidence of asymmetry. This suggests that exporters appear to PTM at a relatively constant rate. This finding might also explain the failure of prior studies to find evidence of asymmetric exposure in foreign exchange (FX) rates. This study also provides a cross sectional analysis to explain the implications of the observed PTM of producers’ marginal cost, market share and product differentiation. The cross-sectional regressions are estimated using OLS, Generalised Method of Moment (GMM) and Logit estimations. Overall, the results suggest that market share affects PTM positively.Exporters with smaller market share are more likely to operate PTM. Alternatively, product differentiation is negatively associated with PTM. So industries with highly differentiated products are less likely to adjust their prices. However, marginal costs seem not to be significantly associated with PTM. Exporters perform PTM to limit the FX rate effect pass-through to their foreign customers, but they also avoided exploiting PTM to the full, since to do so can substantially reduce their profits.

Ihwg-μnir: A Miniaturised Near-infrared Gas Sensor Based On Substrate-integrated Hollow Waveguides Coupled To A Micro-nir-spectrophotometer.

A miniaturised gas analyser is described and evaluated based on the use of a substrate-integrated hollow waveguide (iHWG) coupled to a microsized near-infrared spectrophotometer comprising a linear variable filter and an array of InGaAs detectors. This gas sensing system was applied to analyse surrogate samples of natural fuel gas containing methane, ethane, propane and butane, quantified by using multivariate regression models based on partial least square (PLS) algorithms and Savitzky-Golay 1(st) derivative data preprocessing. The external validation of the obtained models reveals root mean square errors of prediction of 0.37, 0.36, 0.67 and 0.37% (v/v), for methane, ethane, propane and butane, respectively. The developed sensing system provides particularly rapid response times upon composition changes of the gaseous sample (approximately 2 s) due the minute volume of the iHWG-based measurement cell. The sensing system developed in this study is fully portable with a hand-held sized analyser footprint, and thus ideally suited for field analysis. Last but not least, the obtained results corroborate the potential of NIR-iHWG analysers for monitoring the quality of natural gas and petrochemical gaseous products.

Classification Of Frankfurters By Ft-raman Spectroscopy And Chemometric Methods.

Frankfurters are widely consumed all over the world, and the production requires a wide range of meat and non-meat ingredients. Due to these characteristics, frankfurters are products that can be easily adulterated with lower value meats, and the presence of undeclared species. Adulterations are often still difficult to detect, due the fact that the adulterant components are usually very similar to the authentic product. In this work, FT-Raman spectroscopy was employed as a rapid technique for assessing the quality of frankfurters. Based on information provided by the Raman spectra, a multivariate classification model was developed to identify the frankfurter type. The aim was to study three types of frankfurters (chicken, turkey and mixed meat) according to their Raman spectra, based on the fatty vibrational bands. Classification model was built using partial least square discriminant analysis (PLS-DA) and the performance model was evaluated in terms of sensitivity, specificity, accuracy, efficiency and Matthews's correlation coefficient. The PLS-DA models give sensitivity and specificity values on the test set in the ranges of 88%-100%, showing good performance of the classification models. The work shows the Raman spectroscopy with chemometric tools can be used as an analytical tool in quality control of frankfurters.

Comparing Near-infrared Conventional Diffuse Reflectance Spectroscopy And Hyperspectral Imaging For Determination Of The Bulk Properties Of Solid Samples By Multivariate Regression: Determination Of Mooney Viscosity And Plasticity Indices Of Natural Rubber.

Conventional reflectance spectroscopy (NIRS) and hyperspectral imaging (HI) in the near-infrared region (1000-2500 nm) are evaluated and compared, using, as the case study, the determination of relevant properties related to the quality of natural rubber. Mooney viscosity (MV) and plasticity indices (PI) (PI0 - original plasticity, PI30 - plasticity after accelerated aging, and PRI - the plasticity retention index after accelerated aging) of rubber were determined using multivariate regression models. Two hundred and eighty six samples of rubber were measured using conventional and hyperspectral near-infrared imaging reflectance instruments in the range of 1000-2500 nm. The sample set was split into regression (n = 191) and external validation (n = 95) sub-sets. Three instruments were employed for data acquisition: a line scanning hyperspectral camera and two conventional FT-NIR spectrometers. Sample heterogeneity was evaluated using hyperspectral images obtained with a resolution of 150 × 150 μm and principal component analysis. The probed sample area (5 cm(2); 24,000 pixels) to achieve representativeness was found to be equivalent to the average of 6 spectra for a 1 cm diameter probing circular window of one FT-NIR instrument. The other spectrophotometer can probe the whole sample in only one measurement. The results show that the rubber properties can be determined with very similar accuracy and precision by Partial Least Square (PLS) regression models regardless of whether HI-NIR or conventional FT-NIR produce the spectral datasets. The best Root Mean Square Errors of Prediction (RMSEPs) of external validation for MV, PI0, PI30, and PRI were 4.3, 1.8, 3.4, and 5.3%, respectively. Though the quantitative results provided by the three instruments can be considered equivalent, the hyperspectral imaging instrument presents a number of advantages, being about 6 times faster than conventional bulk spectrometers, producing robust spectral data by ensuring sample representativeness, and minimizing the effect of the presence of contaminants.

Hidrocarbonetos policíclicos aromáticos (HPAS) em cachaça, rum, uísque e álcool combustível

The concentration of 15 polycyclic aromatic hydrocarbons (PAHs) in 57 samples of distillates (cachaça, rum, whiskey, and alcohol fuel) has been determined by HPLC-Fluorescence detection. The quantitative analytical profile of PAHs treated by Partial Least Square - Discriminant Analysis (PLS-DA) provided a good classification of the studied spirits based on their PAHs content. Additionally, the classification of the sugar cane derivatives according to the harvest practice was obtained treating the analytical data by Linear Discriminant Analysis (LDA), using naphthalene, acenaphthene, fluorene, phenanthrene, anthracene, fluoranthene, pyrene, benz[a]anthracene, benz[b]fluoranthene, and benz[g,h,i]perylene, as a chemical descriptors.