Population dynamics and fisheries assessment of the bigeye thresher (Alopias superciliosus) in the Atlantic: a comparison between North Atlantic and South Atlantic stocks

Tese de doutoramento, Ciências do Mar, da Terra e do Ambiente (Biologia Pesqueira), Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Segurança ambiental: mapa de riscos ambientais da pesca artesanal com espinhel, Litoral Nordeste do Pará

Esta pesquisa foi realizada na Vila de Caratateua e adjacências, parte da microrregião bragantina, litoral nordeste do Pará, com o objetivo de identificar, avaliar e mapear os riscos ambientais ocupacionais, inerentes à utilização do espinhel pelos pescadores artesanais, por meio de uma avaliação qualitativa in loco durante a execução desta modalidade de pesca, com a colaboração participativa de pescadores experientes. Como resultado, elaborou-se um mapa de riscos ambientais ocupacionais dessa modalidade de pesca, que deverá ser utilizado em programas de gestão de segurança no trabalho (PPRA, PCMSO, PPP) e políticas públicas prevencionistas para o setor, por ser um instrumento importante para o pescador artesanal. Sua análise possibilita identificar, no layout da área de trabalho, pontos vulneráveis de acidentes. Esse mapa facilita encontrar soluções práticas para eliminar ou controlar os riscos do processo de pesca artesanal com espinhel.

Sexual development, size at maturity, size at maternity and fecundity of the blue shark Prionace glauca (Linnaeus, 1758) in the Southwest Atlantic

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Literature review of elasmobranch bycatch and retention rate

To address growing concern over the effects of fisheries non-target catch on elasmobranchs worldwide, the accurate reporting of elasmobranch catch is essential. This requires data on a combination of measures, including reported landings, retained and discarded non-target catch, and post-discard survival. Identification of the factors influencing discard vs. retention is needed to improve catch estimates and to determine wasteful fishing practices. To do this we compared retention rates of elasmobranch non-target catch in a broad subset of fisheries throughout the world by taxon, fishing country, and gear. A regression tree and random forest analysis indicated that taxon was the most important determinant of retention in this dataset, but all three factors together explained 59% of the variance. Estimates of total elasmobranch removals were calculated by dividing the FAO global elasmobranch landings by average retention rates and suggest that total elasmobranch removals may exceed FAO reported landings by as much as 400%. This analysis is the first effort to directly characterize global drivers of discards for elasmobranch non-target catch. Our results highlight the importance of accurate quantification of retention and discard rates to improve assessments of the potential impacts of fisheries on these species.

Physical factors influencing the distribution of a top predator in a subtropical oligotrophic estuary

We used longline fishing to determine the effects of distance from the ocean, season, and short-term variation in abiotic conditions on the abundance of juvenile bull sharks (Carcharhinus leucas) in an estuary of the Florida Everglades, U.S.A. Logistic regression revealed that young-of-the-year sharks were concentrated at a protected site 20 km upstream and were present in greater abundance when dissolved oxygen (DO) levels were high. For older juvenile sharks (age 1+), DO levels had the greatest influence on catch probabilities followed by distance from the ocean; they were most likely to be caught at sites with .3.5 mg L21 DO and on the main branch of the river 20 km upstream. Salinity had a relatively small effect on catch rates and there were no seasonal shifts in shark distribution. Our results highlight the importance of considering DO as a possible driver of top predator distributions in estuaries, even in the absence of hypoxia. In Everglades estuaries hydrological drivers that affect DO levels (e.g., groundwater discharge, modification of primary productivity through nutrient fluxes) will be important in determining shark distributions, and the effects of planned ecosystem restoration efforts on bull sharks will not simply be mediated by changing salinity regimes and the location of the oligohaline zone. More generally, variation in DO levels could structure the nature and spatiotemporal pattern of top predator effects in the coastal Everglades, and other tropical and subtropical estuaries, because of interspecific variation in reliance on DO within the top predator guild.

Distribution of skipjack in the Pacific Ocean, based on records of incidental catches of the Japanese longline tuna fishery

ENGLISH: All available longline data on skipjack captured in the Pacific Ocean by Japanese research vessels (1949-1965) and from incidental skipjack catches by Japanese commercial vessels (1956-1964) were analyzed. As skipjack are not specifically sought by longline vessels, the data are limited. Considering this it was found that: longline gear captures skipjack of wider size-range and is more selective for larger skipjack than conventional fishing methods, i.e. pole-and-line and purse-seine; skipjack are widely and almost continuously distributed across the Pacific; throughout the year average hook-rates are greater in the southeastern Pacific than in the northwestern Pacific; areas of high hook-rate shift south during the second and third quarters and north during the first and fourth quarters; in the western Pacific the north-south range of the catch distribution was greatest in the first and fourth quarters; skipjack hook-rates are relatively high in the northwestern Pacific east of Japan only during the first and fourth quarters; the highest hook-rates were recorded in extensive areas along the equator (from lO°N to 20°8 between approximately 155°W-100°W); generally more skipjack were captured by research longline gear in water temperature ranges approaching both the upper and lower temperature limits of skipjack distribution (18-21C and 26-28C), than is the case in surface skipjack fisheries; tentative comparisons of longline skipjack catch distributions with Pacific current systems, suggests low skipjack abundance in both North Pacific Central and North Pacific Equatorial water; the sex ratio was 95 males : 63 females in a small sample of skipjack examined; longlines capture skipjack of three, and possibly more, age groups; in skipjack size-composition samples studied, the smaller modal group (65 cm) observed in January-March in the northwestern Pacific (1600E-180oE and 20oN-45°N) corresponds in size to the larger modal group appearing in the late-summer surface fishery off the Izu-Bonin Islands southeast of Japan, and also compares in modal size to the skipjack taken in the Hawaiian fishery in spring time; the analysis of skipjack catches by hook position on the longline and by death-rate studies, indicates that part of the catch is made while the gear is in motion near the surface, and a lesser part of the catch is made when the gear is stabilized at a depth of 70 to 140 m. A brief discussion is given, in the light of new information presented, on several hypotheses by other authors concerning the population structure and migration of skipjack in the Pacific Ocean. SPANISH: Se analizaron todos los datos disponibles de la pesca con palangre de barriletes capturados en el Océano Pacífico por barcos japoneses de investigación (1949-1965) y por las capturas incidentales de los barcos comerciales japoneses (1956-1964). Como los barcos palangreros específicamente, no persiguen al barrilete, los datos son limitados. Considerando ésto, se encontró: que el arte palangrero obtiene barriletes con una distribución más amplia de tallas, y es más selectivo en cuanto a los barriletes de mayor talla, que los métodos convencionales de pesca, Le. cañas de pescar y redes de cerco; el barrilete se encuentra amplia y casi continuamente distribuido a través del Pacífico; en todo el año, las tasas promedio de captura por anzuelo son superiores en el Pacífico sudoriental que las del Pacífico noroeste; las áreas con una tasa alta de captura por anzuelo, se cambian hacia el sur durante los trimestres segundo y tercero, y durante los trimestres primero y cuarto hacia el norte; en el Pacífico occidental la amplitud de la distribución de captura norte-sur, fue superior en los trimestres primero y cuarto; las tasas de captura por anzuelo de barrilete, son relativamente altas en el Pacífico noroeste al este del Japón, únicamente durante los trimestres primero y cuarto; las tasas de captura por anzuelo más altas fueron registradas en extensas áreas a lo largo del ecuador (desde los 10°N hasta los 20°S, aproximadamente entre los 155°W-100°W) ; generalmente las artes palangreras de investigación capturaron más barrilete en aguas en las que la temperatura se aproximaba a los límites más altos o bajos de la temperatura en la distribución del barrilete (18-21 C y 26-28 C), que en el caso de la pesca superficial de barrilete; las comparaciones tentativas de la captura de barrilete con palangre, con el sistema de las corrientes del Pacífico, sugieren una abundancia inferior de barrilete tanto en las aguas del Pacífico central del norte como en las del Pacífico ecuatorial del norte; la proporcíon sexual examinada en una pequeña muestra de barriletes, fue de 95 machos y 63 hembras; los palangreros capturan barriletes de tres grupos de edad y posiblemente de más; en las muestras estudiadas de la composición de las tallas de barrilete, el grupo modal más pequeño (65 cm), observado en enero-marzo en el Pacífico noroeste (160 0E-180° y 20 oN-45°N), corresponde en talla al grupo modal más grande que aparece en la pesca de superficie a fines del verano frente a las Islas Izu-Bonín al sudeste del Japón, y se compara también con la talla modal del barrilete obtenido en la pesca hawaiana en la época de primavera; el análisis de las capturas de barrilete por medio del estudio de la posición de los anzuelos en el palangre y por la tasa de mortalidad, indica que parte de la captura se efectúa cuando el equipo está en movimiento cerca a la superficie y una parte inferior de la captura se realiza, cuando las artes se estabilizan a una profundidad de 70 a 140 m. Se ofrece una breve discusión sobre varias hipótesis de otros autores, en vista de la nueva información presentada referente a la estructura poblacional y a la migración del barrilete en el Océano Pacífico. (PDF contains 100 pages.)

The Japanese longline fishery for tunas and billfishes in the Eastern Pacific Ocean east of 130°W, 1964-1966

ENGLISH: Catch and effort statistics from the Japanese longline fishery operating in the eastern Pacific Ocean east of 130°W, from 1964 through 1966, were examined to study the geographic distribution, trends in apparent abundance, sexual maturity, and size composition of the tunas and billfishes. Yellowfin and bigeye tuna are generally most abundant in the equatorial regions of the high seas between about 10°N and 20°S, but west of 95°W. The marlins are more coastal in distribution, usually occurring to the east, and to the north and south of the heavy concentration of tropical tunas. Sailfish tend to be associated with coastal areas also, whereas shortbill spearfish are more frequently captured on the high seas. Swordfish are found most abundantly in the coastal regions off northern Mexico, and off northern Peru and southern Ecuador. The albacore, a temperate-water species of tuna, is most abundant in the high-seas area of the southeastern Pacific, Trends in apparent abundance were measured by the hook-rate (i.e. catch per 100 hooks). Hook-rates for bigeye tuna have decreased from about 3.5 fish per 100 hooks in 1958 to about 1.1 fish per 100 hooks in 1966. During the same period, effort was increased substantially and total catch has decreased since 1963. It does not appear that increased effort will result in sustained increased catches of bigeye. Hook-rates for yellowfin tuna in recent years have decreased to about one third of their initial levels. The surface fishery for yellowfin in the eastern Pacific apparently affects recruitment to the longline fishery. Assuming that present conditions in the surface fishery do not change appreciably, increased effort in the longline fishery probably would not produce sustained increased catches, but might in fact result in reduced catch rates. Unlike the situation for the other tunas of the eastern Pacific, it appears that the albacore fishery east of 130°W is not having a marked effect on their abundance. Although a high degree of variability was observed in the hookrates for striped marlin, no obvious trends are evident. Catches have decreased slightly from 13,500 tons in 1964 to about 11,000 tons in 1966. Heavy fishing for sailfish began in 1964 with a hook-rate of 10.6 fish per 100 hooks; by 1966 it had dropped to 5.8. Catches of this species in the area of major concentration dropped from 329,900 fish in 1965 to 173,600 fish in 1966. This fishery has operated for too short a period of time to enable one to determine its effect on the sustainable yield. Length-frequency measurements and gonad samples from yellowfin and bigeye tunas collected in the eastern Pacific were analyzed to determine sexual maturity and growth characteristics. The results corroborate the findings of earlier investigators. SPANISH: Las estadísticas de captura y del esfuerzo de la pesca japonesa con palangre que maniobra en el Océano Pacífico oriental al este de los 130°W, desde 1964 hasta 1966, fueron examinadas para estudiar la distribución geográfica, las tendencias de la abundancia aparente, la madurez sexual y la composición de talla de los atunes y de los peces espada. Los atunes aleta amarilla y ojo grande son generalmente más abundantes en las regiones ecuatoriales de alta entre unos 10°N y 20°S, pero al oeste de los 95°W. Los marlines son costaneros en distribución, apareciendo habitualmente hacia el y hacia el norte y sur de la densa concentración de atunes tropicales. pez vela tiende a asociarse también con las áreas costaneras, mientras el pez aguja corta es capturado con más frecuencia en alta mar. Los peces espada se encuentran más abundantemente en las regiones costaneras de México septentrional y frente al norte del Perú y del Ecuador meridional. La albacora, una especie de atún de aguas templadas, es más abundante en el área de alta mar del Pacífico sudoriental. Las tendencias en la abundancia aparente fueron evaluadas por la tasa de captura por anzuelo (i.e., captura por 100 anzuelos). Las tasas de captura por anzuelo del atún ojo grande, disminuyeron en 1958, de unos 3.5 peces por 100 anzuelos a cerca de 1.1 pez por 100 anzuelos en 1966. Durante el mismo período, el esfuerzo fue aumentado substancialmente y, desde 1963, la captura total disminuyó. No parece que el aumento del esfuerzo resultara en un aumento sostenido de las capturas del atún ojo grande. Las tasas de captura por anzuelo de atún aleta amarilla han disminuido en un tercio de los niveles iniciales, en años recientes. La pesca de superficie de esta especie en el Pacífico oriental afectó aparentemente el reclutamiento en la pesca con palangre. Suponiendo que las condiciones actuales de la pesquería no cambien apreciablemente, un aumento del esfuerzo en la pesquería palangrera probablemente no produciría un aumento sostenido de las capturas, pero en realidad podría resultar en tasas de captura reducidas. A diferencia de la situación de otros túnidos del Pacífico oriental, parece que la pesca de la albacora al este de los 130°W no ha tenido un efecto marcado en su abundancia. Aunque se observó un alto grado de variabilidad en las tasas de captura por anzuelo correspondientes al marlin rayado, no fueron evidentes tendencias obvias. Las capturas han mermado ligeramente de 13,500 toneladas en 1964 a unas 11,000 toneladas en 1966. La fuerte pesca por peces vela empezó en 1964 con una tasa por anzuelo de 10.6 peces por 100 anzuelos; en 1966 había mermado a 5.8. Las capturas de esta especie en el área de mayor concentración disminuyeron de 329,000 peces en 1965, a 173,600 peces en 1966. Esta pesquería ha maniobrado por un período demasiado corto de tiempo para que pueda determinarse su efecto en el rendimiento sostenible. Las mediciones frecuencia-longitud, y las muestras de las gónadas de los atunes aleta amarilla y ojo grande, obtenidas en el Pacífico oriental, fueron analizadas para determinar la madurez sexual y las características del crecimiento. Los resultados corroboraron los hallazgos anteriores de investigadores. (PDF contains 144 pages.)

A review of the Japanese longline fishery for tunas and billfishes in the Eastern Pacific Ocean, 1971-1980

ENGLISH: This report reviews the Japanese longline fishery for tunas and billfishes in the eastern Pacific Ocean during 1971-1980, extending the studies made by other investigators, which covered the 1956-1970 period. The spatial and temporal distributions of fishing effort, catch, apparent abundance, sexual maturity, and size composition are examined for each species. The deep longlining method is described and the hook rates for this gear and for conventional longline gear are compared. Some observations on the interaction of surface and longline gear are reported. SPANISH: Se examina en este informe la pesca palangrera japonesa de atunes y peces espada en el Océano Pacífico oriental durante 1971-1980, ampliando los estudios hechos por otros investigadores que incluían el período de 1956-1970. Para cada especie se examinan las distribuciones temporales y espaciales del esfuerzo de pesca, captura, abundancia aparente, madurez sexual y composición de talla. Se describe el método de los palangres profundos y se comparan los índices de captura por anzuelo de este arte y del arte convencional palangrero. Se presentan algunas observaciones sobre la interacción de las artes espipelágicas y las palangreras. (PDF contains 163 pages.)

Analysis of variance and standardization of longline hook rates of bigeye (Thunnus obesus) and yellowfin (Thunnus albacares) tunas in the Eastern Pacific Ocean during 1975-1987

ENGLISH: Longline hook rates of bigeye and yellowfin tunas in the eastern Pacific Ocean were standardized by maximum depth of fishing, area, and season, using generalized linear models (GLM's). The annual trends of the standardized hook rates differ from the unstandardized, and are more likely to represent the changes in abundance of tunas in the age groups most vulnerable to longliners in the fishing grounds. For both species all of the interactions in the GLM's involving years, depths of fishing, areas, and seasons were significant. This means that the annual trends in hook rates depend on which depths, areas, and seasons are being considered. The overall average hook rates for each were estimated by weighting each 5-degree quadrangle equally and each season by the number of months in it. Since the annual trends in hook rates for each fishing depth category are roughly the same for bigeye, total average annual hook rate estimates are possible with the GLM. For yellowfin, the situation is less clear because of a preponderance of empty cells in the model. The full models explained 55% of the variation in bigeye hook rate and 33% of that of yellowfin. SPANISH: Se estandardizaron las tasas de captura con palangre de atunes patudo y aleta amarilla en el Océano Pacífico oriental por la profunidad máxima de pesca, área, y temporada, usando modelos lineales generalizados (MLG). Las tendencias anuales de las tasas de captura estandardizadas son diferentes a las de las tasas no estandardizadas, y es más que representen los cambios en la abundancia de los atunes en los grupos de edad más vulnerables a los palangreros en las áreas de pesca. Para ambas especies fueron significativas todas las interacciones en los MLG con año, profundidad de pesca, área, y temporada. Esto significa que las tendencias anuales de las tasas de captura dependen de cuál profundidad, área, y temporado se está considerando. Para la estimación de la tasa de captura general media para cada especie se ponderó cada cuadrángulo de 5 grados igualmente y cada temporada por el número de meses que contiene. Ya que las tendencias anuales en las tasas de captura para cada categoría de profundidad de pesca son aproximadamente iguales para el patudo, son posibles estimaciones de la tasa de captura anual media total con el MLG. En el caso del aleta amarilla, la situación es más confusa, debido a una preponderancia de celdas vacías en el modelo. Los modelos completos explican el 55% de la variación de la tasa de captura de patudo y 33% de la del aleta amarilla. (PDF contains 19 pages.)

A review of the Japanese longline fishery for tunas and billfishes in the Eastern Pacific Ocean, 1981-1987

ENGLISH: This report reviews the activity of the Japanese longline fishery in the eastern Pacific Ocean during the 1981-1987 period, extending the studies for the 1956-1980 period made by other investigators. The spatial and temporal distributions of fishing effort, catch, apparent abundance, sexual maturity, and size composition are examined for the principal species of tunas and billfishes taken by that fishery. The interaction between the surface and longline fisheries is discussed. SPANISH: En este informe se presenta un repaso de la actividad pesquera de barcos palangreros japoneses en el Océano Pacifico oriental durante el periodo de 1981-1987, extendiendo los estudios del periodo de 1956-1980 realizados por otros investigadores. Se examinan las distribuciones especial y temporal de les fuerzo de pesca, la captura, la abundancia aparente, la madurez sexual, y la composición por talla de las principales especies de atunes y picudos capturadas por dicha pesquería. Se comenta la nteracción entre las pesquerías de superficie y palangrera. (PDF contains 171 pages.)

Workshop on turtle bycatch mitigation for longline fisheries: experimental design and data analysis, 7-8 November 2007, San Ramón de Alajuela, Costa Rica

Large numbers of fishing vessels operating from ports in Latin America participate in surface longline fisheries in the eastern Pacific Ocean (EPO), and several species of sea turtles inhabit the grounds where these fleets operate. The endangered status of several sea turtle species, and the success of circle hooks (‘treatment’ hooks) in reducing turtle hookings in other ocean areas, as compared to J-hooks and Japanese-style tuna hooks (‘control’ hooks), prompted the initiation of a hook exchange program on the west coast of Latin America, the Eastern Pacific Regional Sea Turtle Program (EPRSTP)1. One of the goals of the EPRSTP is to determine if circle hooks would be effective at reducing turtle bycatch in artisanal fisheries of the EPO without significantly reducing the catch of marketable fish species. Participating fishers were provided with circle hooks at no cost and asked to replace the J/Japanese-style tuna hooks on their longlines with circle hooks in an alternating manner. Data collected by the EPRSTP show differences in longline gear and operational characteristics within and among countries. These aspects of the data, in addition to difficulties encountered with implementation of the alternating-hook design, pose challenges for analysis of these data.

A review of the Japanese longline fishery for tunas and billfishes in the eastern Pacific Ocean, 1993-1997

English: This report reviews the Japanese longline fishery in the eastern Pacific Ocean during the 1993-1997 period, extending the studies for the 1956-1992 period made by other investigators. The spatial and temporal distributions of fishing effort, catch, apparent abundance, sexual maturity, and size composition are examined for the principal species of tunas and billfishes taken by that fishery. Some information on the catches of sharks by the Japanese longline fishery is given. The interactions between the surface and longline fisheries are discussed. Spanish: En este informe se presenta un análisis de la actividad pesquera de buques palangreros japoneses en el Océano Pacífico oriental durante el período de 1993-1997, extendiendo los estudios del período de 1956-1992 realizados por otros investigadores. Se examinan las distribuciones espacial y temporal del esfuerzo de pesca, la captura, la abundancia aparente, la madurez sexual, y la composición por talla de las principales especies de atunes y picudos capturadas por dicha pesquería. Se presenta cierta información sobre las capturas de tiburones por la pesquería palangrera japonesa. Se describen las interacciones entre las pesquerías de superficie y palangrera.

Estimation of discard mortality of sablefish (Anoplopoma fimbria) in Alaska longline fisheries

Sablefish (Anoplopoma fimbria) are often caught incidentally in longline fisheries and discarded, but the extent of mortality after release is unknown, which creates uncertainty for estimates of total mortality. We analyzed data from 10,427 fish that were tagged in research surveys and recovered in surveys and commercial fisheries up to 19 years later and found a decrease in recapture rates for fish originally captured at shallower depths (210–319 m) during the study, sustaining severe hooking injuries, and sustaining amphipod predation injuries. The overall estimated discard mortality rate was 11.71%. This estimate is based on an assumed survival rate of 96.5% for fish with minor hooking injuries and the observed recapture rates for sablefish at each level of severity of hook injury. This estimate may be lower than what actually occurs in commercial fisheries because fish are likely not handled as carefully as those in our study. Comparing our results with data on the relative occurrence of the severity of hooking injuries in longline fisheries may lead to more accurate accounting of total mortality attributable to fishing and to improved management of this species.

Species compositions of elasmobranchs caught by three different commercial fishing methods off southwestern Australia, and biological data for four abundant bycatch species

Commercial catches taken in southwestern Australian waters by trawl fisheries targeting prawns and scallops and from gillnet and longline fisheries targeting sharks were sampled at different times of the year between 2002 and 2008. This sampling yielded 33 elasmobranch species representing 17 families. Multivariate statistics elucidated the ways in which the species compositions of elasmobranchs differed among fishing methods and provided benchmark data for detecting changes in the elasmobranch fauna in the future. Virtually all elasmobranchs caught by trawling, which consisted predominantly of rays, were discarded as bycatch, as were approximately a quarter of the elasmobranchs caught by both gillnetting and longlining. The maximum lengths and the lengths at maturity of four abundant bycatch species, Heterodontus portusjacksoni, Aptychotrema vincentiana, Squatina australis, and Myliobatis australis, were greater for females than males. The L50 determined for the males of these species at maturity by using full clasper calcification as the criterion of maturity did not differ significantly from the corresponding L50 derived by using gonadal data as the criterion for maturity. The proportions of the individuals of these species with lengths less than those at which 50% reach maturity were far greater in trawl samples than in gillnet and longline samples. This result was due to differences in gear selectivity and to trawling being undertaken in shallow inshore waters that act as nursery areas for these species. Sound quantitative data on the species compositions of elasmobranchs caught by commercial fisheries and the biological characteristics of the main elasmobranch bycatch species are crucial for developing strategies for conserving these important species and thus the marine ecosystems of which they are part.

Using the empirical Bayes method to estimate and evaluate bycatch rates of seabirds from individual fishing vessels

Minimizing bycatch of seabirds is a major goal of the U.S. National Marine Fisheries Service. In Alaska waters, the bycatch (i.e., inadvertent catches) of seabirds has been an incidental result of demersal groundfish longline fishery operations. Notably, the endangered short-tailed albatross (Phoebastria albatrus) has been taken in this groundfish fishery. Bycatch rates of seabirds from individual vessels may be of particular interest because vessels with high bycatch rates may not be functioning effectively with seabird avoidance gears, and there may be a need for suggestions on how to use these avoidance gears more effectively. Therefore, bycatch estimates are usually made on an individual vessel basis and then summed to obtain the total estimate for the entire fleet.