108 resultados para HYDROXYPROLINE
Resumo:
In the collagen triple-helical structure, large side groups occuring at location 3 in the repeating triplet sequences (Gly-Rz-Rz)n are appreciably constrained if a proline residue occurs as Rz in a neighbouring chain. The severity of the steric hindrance depends on the geometry of the prolyl ring. In this paper we propose two different puckerir.gs for the proline ring, the first one being energetically favorable for most types of residue sequences commonly found in collegen while the second is preferable when an amino acid residue with a large side group occurs at location 3 in a neighbouring chain. The puckering of the pyrrolidine ring of hydroxyproline, as proposed earlier, is quite favorable from energy as well as stereochemical considerations.
Resumo:
Trimeric autotransporters are a family of secreted outer membrane proteins in Gram-negative bacteria. These obligate homotrimeric proteins share a conserved C-terminal region, termed the translocation unit. This domain consists of an integral membrane β-barrel anchor and associated α-helices which pass through the pore of the barrel. The α-helices link to the extracellular portion of the protein, the passenger domain. Autotransportation refers to the way in which the passenger domain is secreted into the extracellular space. It appears that the translocation unit mediates the transport of the passenger domain across the outer membrane, and no external factors, such as ATP, ion gradients nor other proteins, are required. The passenger domain of autotransporters contains the specific activities of each protein. These are usually related to virulence. In trimeric autotransporters, the main function of the proteins is to act as adhesins. One such protein is the Yersinia adhesin YadA, found in enteropathogenic species of Yersinia. The main activity of YadA from Y. enterocolitica is to bind collagen, and it also mediates adhesion to other molecules of the extracellular matrix. In addition, YadA is involved in serum resistance, phagocytosis resistance, binding to epithelial cells and autoagglutination. YadA is an essential virulence factor of Y. enterocolitica, and removal of this protein from the bacteria leads to avirulence. In this study, I investigated the YadA-collagen interaction by studying the binding of YadA to collagen-mimicking peptides by several biochemical and biophysical methods. YadA bound as tightly to the triple-helical model peptide (Pro-Hyp-Gly)10 as to native collagen type I. However, YadA failed to bind a similar peptide that does not form a collagenous triple helix. As (Pro-Hyp-Gly)10 does not contain a specific sequence, we concluded that a triple-helical conformation is necessary for YadA binding, but no specific sequence is required. To further investigate binding determinants for YadA in collagens, I examined the binding of YadA to a library of collagen-mimicking peptides that span the entire triple-helical sequences of human collagens type II and type III. YadA bound promiscuously to many but not all peptides, indicating that a triple-helical conformation alone is not sufficient for binding. The high-binding peptides did not share a clear binding motif, but these peptides were rich in hydroxyproline residues and contained a low number of charged residues. YadA thus binds collagens without sequence specificity. This strategy of promiscuous binding may be advantageous for pathogenic bacteria. The Eib proteins from Escherichia coli are immunoglobulin (Ig)-binding homologues of YadA. I showed conclusively that recombinant EibA, EibC, EibD and EibF bind to IgG Fc. I crystallised a fragment of the passenger domain of EibD, which binds IgA in addition to IgG. The structure has a YadA-like head domain and an extended coiled-coil stalk. The top half of the coiled-coil is right-handed with hendecad periodicity, whereas the lower half is a canonical left-handed coiled-coil. At the transition from right- to left-handedness, a small β-sheet protrudes from each monomer. I was able to map the binding regions for IgG and IgA using truncations and site-directed mutagenesis to the coiled-coil stalk and identified residues critical for Ig binding.
Resumo:
The molecular and crystal structures of three compounds, representing the repeating units of the -bend ribbon (an approximate 310-helix, with an intramolecular hydrogen-bonding donor every two residues), have been determined by x-ray diffraction. They are Boc-Aib-Hib-NHBzl, Z-Aib-Hib-NHBzl, and Z-L-Hyp-Aib-NHMe (Aib, -aminoisobutyric acid; Bzl, benzyl; Boc, t-butyloxycarbonyl; Hyp, hydroxyproline Hib, -hydroxyisobutyric acid; Z, benzyloxycarbonyl). The two former compounds are folded in a -bend conformation: type III (III) for Boc-Aib-Hib-NHBzl, while type II (II) for the Z analogue. Conversely, the structure of Z-L-Hyp-Aib-NHMe, although not far from a type II -bend, is partially open.
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Zervamicin-IIB (Zrv-IIB) is a 16 residue peptaibol which forms voltage-activated, multiple conductance level channels in planar lipid bilayers. A molecular model of Zrv-IIB channels is presented. The structure of monomeric Zrv-IIB is based upon the crystal structure of Zervamicin-Leu. The helical backbone is kinked by a hydroxyproline residue at position 10. Zrv-IIB channels are modelled as helix bundles of from 4 to 8 parallel helices surrounding a central pore. The monomers are packed with their C-terminal helical segments in close contact, and the bundles are stabilized by hydrogen bonds between glutamine 11 and hydroxyproline 10 of adjacent helices. Interaction energy profiles for movement of three different probes species (K+, Cl- and water) through the central pore are analyzed. The conformations of: (a) the sidechain of glutamine 3; (b) the hydroxyl group of hydroxyproline 10; and (c) the C-terminal hydroxyl group are "optimized" in order to maximize favourable interactions between the channel and the probes, resulting in favourable interaction energy profiles for all three. This suggests that conformational flexibility of polar sidechains enables the channel lining to mimic an aqueous environment.
Resumo:
The membrane channel-forming polypeptide, Leu(1)-zervamicin, Ac-Leu-Ile-Gln-Iva-Ile(5)-Thr-Aib-Leu-Aib-Hyp(10) -Gln-Aib-Hyp-Aib-Pro(15)-Phol (Aib: alpha-aminoisobutyric acid; Iva: isovaline; Hyp: 4-hydroxyproline; Phol: phenylalininol) has been analyzed by x-ray diffraction in a third crystal form. Although the bent helix is quite similar to the conformations found in crystals A and B, the amount of bending is more severe with a bending angle approximate to 47 degrees, The water channel formed by the convex polar faces of neighboring helices is larger at the mouth than in crystals A and B, and the water sites have become disordered. The channel is interrupted in the middle by a hydrogen bond between the OH of Hyp(10) and the NH2 of the Gln(11) of a neighboring molecule. The side chain of Gln(11) is wrapped around the helix backbone in an unusual fashion in order that it can augment the polar side of the helix. In the present crystal C there appears to be an additional conformation for the Gln(11) side chain (with approximate to 20% occupancy) that opens the channel for possible ion passage. Structure parameters for C85H140N18O22.xH(2)O.C2H5OH are space group P2(1)2(1)2(1), a = 10.337 (2) Angstrom, b = 28.387 (7) Angstrom, c = 39.864 (11) Angstrom, Z = 4, agreement factor R = 12.99% for 3250 data observed > 3 sigma(F), resolution = 1.2 Angstrom. (C) 1994 John Wiley & Sons, Inc.
Resumo:
The selective hydroxylation of proline residues in nascent procollagen chains by prolyl hydroxylase (EC 1.14.11.2) can be understood in terms of the conformational feature of the -Pro-Gly-segments in linear peptides and globular proteins. The folded beta-turn conformation in such segments appears to be the conformational requirement for proline hydroxylation. The available data on the hydroxylation of native and synthetic substrates of prolyl hydroxylase are explained on the basis of the extent of beta-turn formation in them. Taken in conjunction with the conformational features of the hydroxyproline residue, our results bring out the conformational reason for the posttranslational proline hydroxylation which, it is proposed, leads to the "straightening" of the beta-turn segments into the linear triple-helical conformation.
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This review article, based on a lecture delivered in Madras in 1985, is an account of the author's experience in the working out of the molecular structure and conformation of the collagen triple-helix over the years 1952–78. It starts with the first proposal of the correct triple-helix in 1954, but with three residues per turn, which was later refined in 1955 into a coiled-coil structure with approximately 3.3 residues per turn. The structure readily fitted proline and hydroxyproline residues and required glycine as every third residue in each of the three chains. The controversy regarding the number of hydrogen bonds per tripeptide could not be resolved by X-ray diffraction or energy minimization, but physicochemical data, obtained in other laboratories during 1961–65, strongly pointed to two hydrogen bonds, as suggested by the author. However, it was felt that the structure with one straight NH … O bond was better. A reconciliation of the two was obtained in Chicago in 1968, by showing that the second hydrogen bond is via a water molecule, which makes it weaker, as found in the physicochemical studies mentioned above. This water molecule was also shown, in 1973, to take part in further cross-linking hydrogen bonds with the OH group of hydroxyproline, which occurred always in the location previous to glycine, and is at the right distance from the water. Thus, almost all features of the primary structure, X-ray pattern, optical and hydrodynamic data, and the role of hydroxyproline in stabilising the triple helical structure, have been satisfactorily accounted for. These also lead to a confirmation of Pauling's theory that vitamin C improves immunity to diseases, as explained in the last section.
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O sobrepeso induzido por uma dieta rica em gordura atrasa a cicatrização através do prolongamento da fase inflamatória, entretanto, quando recebem uma dieta obesogênica, alguns ratos são suscetíveis a desenvolver sobrepeso, enquanto outros são resistentes. Drogas anti-inflamatórias não-esteróides são frequentemente utilizadas para reduzir a inflamação. Este estudo investigou a cicatrização cutânea em ratos propensos a obesidade induzida por dieta (DIO) e em ratos resistentes a dieta (DR) e avaliou a participação da administração do celecoxibe na cicatrização cutânea destes animais. Ratos machos foram alimentados com uma dieta padrão (Controle, C) ou com uma dieta rica em gordura saturada (30%). Após 19 semanas, o grupo experimental foi subdividido nos grupos DIO e DR. Uma lesão excisional foi feita e os animais foram mortos 7 ou 14 dias depois. Os grupos tratados receberam uma dose diária de 5 ou 10 mg/kg/dia de celecoxibe a partir de dois dias antes da lesão até 7 dias após a lesão, quando foram mortos. O peso corporal foi maior no grupo DIO comparado aos grupos C e DR. A gordura retroperitoneal foi maior no grupo DIO do que nos grupos C e DR e foi maior no grupo DR do que no grupo C. O tratamento com o celecoxibe não alterou o maior peso corporal apresentado pelo grupo DIO ou a maior porcentagem de gordura retroperitoneal apresentada pelos grupos DIO e DR. Todos os grupos tratados com celecoxibe 10 mg apresentaram atraso na cicatrização e não foram mais analisados. O grupo DIO apresentou intolerância a glicose, e ambos os grupos DIO e DR apresentaram atraso na contração e na reepitelização da lesão. O tratamento com celecoxibe 5 mg reverteu a intolerância a glicose no grupo DIO e a contração atrasada nos grupos DIO e DR. Comparado ao grupo DR, o grupo DIO apresentou maior quantidade de células inflamatórias, assim como maiores níveis de peroxidação lipídica. O tratamento com celecoxib (5 mg) não reduziu o número de PMN, mas reduziu o número de mastócitos no grupo DIO, o número de macrófagos e a peroxidação lipídica em ambos os grupos. A diferenciação miofibroblástica e o remodelamento dos vasos foram atrasados em ambos os grupos DIO e DR. O tratamento com celecoxibe 5 mg aumentou a diferenciação miofibroblástica, mas não alterou os vasos sanguíneos. A quantidade de hidroxiprolina foi semelhante nos grupos DIO e DR. O tratamento com celecoxibe 5 mg aumentou a quantidade de hidroxiprolina em todos os grupos. A quantidade de nitrito foi menor no grupo do que no grupo DR. A expressão de TNF-α foi aumentada no grupo DIO comparada ao grupo DR. Nossos resultados mostraram que os ratos DIO assim como os ratos DR apresentam retardo na cicatrização cutânea devido principalmente a intensa inflamação, e a baixa dose de celecoxibe acelerou o reparo cutâneo nestas condições.
Resumo:
Ácidos graxos são moléculas bioativas endógenas e exógenas, que podem ser potentes mediadores e/ou reguladores de muitos processos celulares, no entanto, os seus efeitos no reparo de lesões cutâneas não estão bem esclarecidos. O objetivo deste trabalho foi investigar os efeitos da suplementação com diferentes óleos comestíveis na cicatrização de lesões cutâneas. Para isso, ratos Wistar machos (6-8 semanas/ 150200g) foram separados em quatro grupos: Um grupo controle (n=7) e três grupos experimentais (n=21). Trinta dias antes de realizarmos a lesão no dorso de cada animal, demos início a suplementação diária pelo método de gavagem com 1,5ml/kg de óleo de girassol, linhaça ou peixe e esta se manteve até o dia da eutanásia (d14). Em d0 uma lesão excional (1cm) foi realizada na parte dorsal de cada animal. A contração da lesão e re-epitelização foram medidas em d0, d7 e d14. Ao sacrificarmos os animais a lesão foi coletada juntamente com pele normal adjacente. O fechamento da lesão foi significativamente maior no grupo de controle (área lesada 582%) em d7, quando comparado com os outros grupos (grupo girassol 682%, linhaça 772% e peixe 732%) com p<0,05, para todos. Em d14 observamos menor área lesada no grupo controle (área lesada 211%) em relação aos grupos suplementados com óleo de linhaça e peixe (área lesada dos grupos linhaça 271% e peixe 271%), com p<0,05 para ambos os grupos. Não observamos diferença no fechamento da lesão quando comparamos os grupos controle (área lesada 211%) e girassol (área lesada 251%). Em relação ao infiltrado inflamatório observamos uma quantidade moderada nos grupos controle, linhaça e peixe, enquanto que no grupo girassol foram encontradas poucas células inflamatórias. Grande número de miofibroblastos foi observado nos grupos controle e girassol na região superficial do tecido de granulação. Entretanto, nos grupos linhaça e peixe observamos poucos miofibroblastos e muitos vasos sanguíneos dilatados. Os grupos controle e girassol apresentaram vasos sanguíneos ocluídos e concentrados na região profunda do tecido de granulação. Os grupos controle e girassol apresentaram densidade moderada de fibras colágenas na região profunda do tecido de granulação. Esse resultado foi confirmado através da dosagem de hidroxiprolina. Os níveis de hidroxiprolina estavam menores nos grupos controle e girassol quando comparados com os grupos linhaça e peixe. A suplementação com diferentes tipos de óleos comestíveis retarda o processo de contração da lesão e afeta o infiltrado inflamatório e a deposição de fibras colágenas
Resumo:
Numerosos modelos in vitro e in vivo foram desenvolvidos para estudar o reparo de lesões e identificar os mecanismos chave deste processo. Visando avaliar o processo de cicatrização utilizamos um modelo de lesão excisional total e um modelo de queimadura promovida por escaldamento. No estudo utilizando o modelo de lesão excisional total, abordamos o uso da aspirina (um inibidor não seletivo da COX) e seu efeito diferenciado sobre os sexos na cicatrização cutânea de camundongos. Observamos que os grupos fêmea controle e tratado apresentaram contração atrasada comparado aos grupos macho controle e tratado, respectivamente. Entre os grupos fêmea e macho controles, as fêmeas apresentaram menor atividade da mieloperoxidase e menor quantidade de células MIF-positivas do que os machos controle. Já entre os grupos fêmea e macho tratados, foi observado que nas fêmeas tratadas, a atividade da mieloperoxidase e a quantidade de macrófagos F4/80-positivos estavam maiores do que no grupo macho tratado. Ainda entre os grupos tratados, as fêmeas apresentaram menores níveis de hidroxiprolina e maior expressão proteica de vWF e VEGF comparado aos machos. No estudo das lesões causadas por queimadura, avaliamos as propriedades anti- inflamatórias e antioxidantes do ácido cafeico fenetil ester (CAPE) no reparo destas lesões e observamos que em 7, 14, 21 e 70 dias após a queimadura, o grupo queimado+CAPE apresentou menor área lesada, além de menor atividade da mieloperoxidase e dos níveis de nitrito do que o grupo queimado. Também foi observado que no grupo queimado+CAPE a expressão proteica de CD68 e de PECAM-1 estava reduzida comparada ao grupo queimado. Analisando os parâmetros de dano oxidativo foi observado que os níveis de MDA e de proteínas carboniladas estavam menores no grupo queimado+CAPE do que no grupo queimado, tanto no plasma quanto na lesão. Em suma, nosso estudo avaliou o processo de cicatrização de dois modelos de lesão, em roedores de diferentes espécies e em abordagens distintas. No modelo de lesão excisional total em camundongos observamos que a administração da aspirina prejudicou o processo de cicatrização em camundongos Balb/c fêmeas, mas não afetou esse processo nos machos da mesma linhagem, o que pode ser explicado pela redução dos níveis de estrógenos nas fêmeas. A utilização do CAPE na cicatrização de queimaduras em ratas comprovou sua eficácia anti-inflamatória e antioxidante devido ao grupo queimado+CAPE ter apresentado maior taxa de cicatrização, redução da resposta inflamatória, além da redução do dano oxidativo em lipídeos e proteínas comparado ao grupo queimado.
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Osteogenesis imperfecta (OI or brittle bone disease) is a disorder of connective tissues caused by mutations in the collagen genes. We previously showed that intrauterine transplantation of human blood fetal stem/stromal cells in OI mice (oim) resulted in a significant reduction of bone fracture. This work examines the cellular mechanisms and mechanical bone modifications underlying these therapeutic effects, particularly examining the direct effects of donor collagen expression on bone material properties. In this study, we found an 84% reduction in femoral fractures in transplanted oim mice. Fetal blood stem/stromal cells engrafted in bones, differentiated into mature osteoblasts, expressed osteocalcin, and produced COL1a2 protein, which is absent in oim mice. The presence of normal collagen decreased hydroxyproline content in bones, altered the apatite crystal structure, increased the bone matrix stiffness, and reduced bone brittleness. In conclusion, expression of normal collagen from mature osteoblast of donor origin significantly decreased bone brittleness by improving the mechanical integrity of the bone at the molecular, tissue, and whole bone levels.
Resumo:
植物细胞壁富含羟脯氨酸糖蛋白生化特性及基因克隆的研究分成三部分: 第一部分,首先从胡萝卜愈伤组织的细胞壁中获得0.2M氯气钙可溶性蛋白质组分, 经10% TCA沉淀及羧甲基纤维素层析,分离得到一个伸展蛋白,并以SDS-聚丙烯酰胺凝胶电泳,氨基酸组成分析,分子电镜观察对所得的伸展蛋白进行了鉴定,结果表明,在胡萝卜愈伤组织中只存在一种伸展蛋白;SDS-聚丙烯酰胺凝胶电泳的考马斯蓝染色和PAS反应均为阳性,表明伸展蛋白除蛋白质组分还含有糖基;氨基酸组成分析表明,羟脯氨酸的克分子含量约占全部氨基酸的40%,丝氨酸的克分子含量约为羟脯氨酸的四分之一,含有大量的碱性和中性氨基酸,而只含有非常少量的酸性氨基酸,并且这些氨基酸克分子百分数也接近于胡萝卜富含羟脯氨酸糖蚤白基因推测出的克分子百分数。这些结果表明已经得到了一个电泳纯的伸展蛋白。伸展蛋白分子电镜观察证明它是一个棒状分子,长度为87纳米。 第二部分,用得到的伸展蛋白免疫家兔和大鼠,得到的抗体的免疫双扩散效价分别为1:2和1:1,用酶联免疫吸附分析测定的兔抗体效价为1:12,800,同时还建立了竞争性酶联免疫吸附分析测定伸展蛋白含量的标准曲线,线性范围为10-0.00001微克。利用得到的抗体对大豆下胚轴伸展蛋白的合成进行了研究。免疫荧光定位表明,大豆下胚轴表皮细胞及表皮下几层薄壁细胞有大量的荧光标记,并且这些荧光标记大部分分布在细胞质内。大豆下胚轴O.lM Tris-HCl pH7.4和0.2M氯化钙的提取物Western Blotting分析证明0.2M氯化钙提取物有与胡萝卜伸展蛋白电流性质相似的组分,并且这个组分在真菌诱导物处理的大豆下胚轴中的积累明显高于受伤处理的下胚轴。受伤和真菌诱导物处理大豆下胚轴中伸展蛋白积累的变化已经用Western Blotting分析和斑点酶联免疫吸附分析来观察,发现真菌诱导物处理的对灰斑病抗性的大豆下胚轴能够较快地积累伸展蛋白(24 - 48小时),而敏感品系的大豆下胚轴则合成伸展蛋白较晚(43-72小时)。在观察大豆下胚轴免疫荧光定位也发现类似的结果。对伸展蛋白基因的转录活性的初步研究认为抗性品系的大豆下胚轴同源mRNA转录可能早于24小时,而敏感品系大豆下胚轴同源mRNA转录可能在24小时后。以上结果认为大豆下胚轴含同源的mRNA和蛋白质组分,因此推测大豆基因组DNA有伸展蛋白基因。 第三部分,根据第二部分得到的结果,用已经得到的编码胡萝卜伸展蛋白的基因(克隆于pUC8质粒载体中)作探针,与大豆基因组DNA的EcoRI部分酶解片段杂交寻找大豆伸展蛋白基因,已经发现四个片段与探针DNA有同源性。它们的分子量分别约为23kb,8kb,5kb和2.8kb,并且23kb片段可能有更高的同源性。将23kb片段插入pUC9质粒载体上进行可隆,并用菌落原位杂交筛选获得5个克隆,对其中两个克隆用ECoRI酶解并进行分子杂交分析,重组质粒被EcoRI切成四个片段。2.8kb片段为pUC9栽体,2kb片段为与pDC5AI质粒伸展蛋白同源性较好的片段。对于23kb片段的重组质粒有待于进一步的分析。
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Herein, one water-soluble functionalized ionic liquid, 1-butyl-3-methylimidazolium dodecyl sulfate ([BMIm(+)][C12H25SO4-]), was designed and its superiorities either used as supporting electrolytes or as additives for successful establishment of MEKC with electrochemiluminescence (ECL) detection (MEKC-ECL) method were investigated. Compared with the common supporting electrolytes such as phosphate solution, 1-butyl-3-methylimidazolium dodecyl sulfate solution used as running buffers led to greatly enhanced ECL intensities and column efficiencies for negative targets, a little increase for neutral-charge ones while maintained nearly unchanged for positive ones due to the electrostatic forces between the large cation BMIm(+) and the solutes and the hydrophobic interactions resulting from the large anion C12H25SO4.
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We explored the CE with Ru(bpy)(3)(2+) electrochemiluminescence detection for the kinetic study of drug-enzyme interaction. Effects of four nonsteroidal anti - inflammatory drugs including aspirin, paracetamol, sodium salicylate and phenacetin on prolidase (PLD) activity in erythrocytes were investigated. Aspirin enhanced PLD activity whereas the other three had inhibiting effects. This may reveal their different effects on the collagen biosynthesis and catabolism that influence tumor invasiveness. Kinetic study of paracetamol on PLD showed that the value of Michaelis constant Km for PLD was 1.23 mM. The mechanism of PLD inhibition by paracetamol is noncompetitive inhibition, and the inhibitor constant K-i value obtained in our research was 9.73 x 10(3) mu g/L.
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Human mesenchymal stem cells (hMSCs) and three-dimensional (3D) woven poly(ɛ-caprolactone) (PCL) scaffolds are promising tools for skeletal tissue engineering. We hypothesized that in vitro culture duration and medium additives can individually and interactively influence the structure, composition, mechanical, and molecular properties of engineered tissues based on hMSCs and 3D poly(ɛ-caprolactone). Bone marrow hMSCs were suspended in collagen gel, seeded on scaffolds, and cultured for 1, 21, or 45 days under chondrogenic and/or osteogenic conditions. Structure, composition, biomechanics, and gene expression were analyzed. In chondrogenic medium, cartilaginous tissue formed by day 21, and hypertrophic mineralization was observed in the newly formed extracellular matrix at the interface with underlying scaffold by day 45. Glycosaminoglycan, hydroxyproline, and calcium contents, and alkaline phosphatase activity depended on culture duration and medium additives, with significant interactive effects (all p < 0.0001). The 45-day constructs exhibited mechanical properties on the order of magnitude of native articular cartilage (aggregate, Young's, and shear moduli of 0.15, 0.12, and 0.033 MPa, respectively). Gene expression was characteristic of chondrogenesis and endochondral bone formation, with sequential regulation of Sox-9, collagen type II, aggrecan, core binding factor alpha 1 (Cbfα1)/Runx2, bone sialoprotein, bone morphogenetic protein-2, and osteocalcin. In contrast, osteogenic medium produced limited osteogenesis. Long-term culture of hMSC on 3D scaffolds resulted in chondrogenesis and regional mineralization at the interface between soft, newly formed engineered cartilage, and stiffer underlying scaffold. These findings merit consideration when developing grafts for osteochondral defect repair.