DNA extraction and RAPD markers to assess the genetic similarity among Gelidium sesquipedale (Rhodophyta) populations

A simple method developed for genomic DNA isolation from fungus was tested on the red alga, Gelidium sesquipedale (Clem.) Born et Thur., which is commercially exploited for its high sulfated polysaccharide (agar) content. This method is faster, cheaper, and less toxic than conventional phenol/chloroform methods. Random amplified polymorphic DNA (RAPD) amplifications were performed successfully without the necessity of purifying the DNA. RAPD markers were used to investigate the genetic similarity among three natural populations of G. sesquipedale from southern Portugal. Bulked-genomic DNA samples of 15 different individuals were made in each population. These can be conceived of as a sample of the population DNA. Of the 62 primers screened, 41 produced bands and 22 revealed polymorphisms. Genetic similarities among populations were high. Populations that are further away from each other have the lowest similarity coefficients, whereas the intermediate Ingrina population, located on the south coast, showed higher genetic similarity with the Odeceixe population located on the southwest coast, than with the Sao Rafael southern population. This suggests a higher genetic flow between Odeceixe and Ingrina or the result may be a founder effect in the sense that the species has propagated from the east coast to the south coast of Portugal. We conclude that the use of this isolation method with RAPD analysis is appropriate to characterize the genetic variability of this commercial species along its geographical distribution. Large sample sizes can be screened at a relatively low cost. Finding genetic markers for commercial populations of C. sesquipedale may be of industrial interest.

Impacto de las aguas residuales urbanas sobre las comunidades de macroalgas intermareales: caso practico en la Reserva de la Biosfera de Urdaibai

[ES] Las aguas residuales domésticas asociadas a los núcleos urbanos se encuentran entre los principales impactos antrópicos que amenazan la biodiversidad de los ecosistemas costeros. El presente trabajo tiene como objetivo evaluar el impacto de aguas residuales provenientes de la población de Bermeo sobre las comunidades intermareales de la parte mas externa de la Reserva de la Biosfera de Urdaibai. Para ello se ha contrastado la estructura de la vegetación bajo la influencia del emisario con la existente en cuatro localidades control en los años 2013 y 2014. Los resultados reflejan diferencias en la composición de la flora intermareal entre la localidad impactada y las localidades no afectadas por la contaminación. La localidad impactada queda caracterizada por la proliferación de algas filamentosas (Bachelotia antillarum) y clorófitos (Ulva intestinalis), así como de rodofíceas cespitosas con corticación simple (Gellidium pusillum, Gellidium pulchellum y Caulacanthus ustulatus). Por el contrario, en las localidades control son abundantes las especies perennes de gran porte y morfología compleja (Bifurcaria bifurcata, Cystoseira tamariscifolia, Halopteris spp. y Gelidium corneum). La calcárea Coralina elongata, estaba presente tanto en las localidades control como en la localidad impactada. Por otra parte, los análisis de la varianza realizados detectaron una elevada variabilidad espacio-temporal en la composición multivariable de la vegetación intermareal de las estaciones control, lo cual restó poder estadístico para detectar las diferencias entre la localidad impactada y los controles. Este resultado pone de manifiesto la dificultad e importancia de elegir controles apropiados para detectar impactos ambientales. Este estudio ha proporcionado la información necesaria sobre el estado ecológico de las comunidades en la situación pre-operacional de la EDAR de Lamiaran (Bermeo), lo cual permitirá evaluar en un futuro la eficacia del tratamiento de las aguas en términos de recuperación biológica.

Klima-aldaketaren eraginak euskal kostaldeko mendebaldeko sakonera handiko begetazio azpimarealean

[eus] Euskal kostaldeko mareazpiko begetazioak aldaketa esanguratsuak jasan ditu azken hiru hamarkadetan. Aurretik egindako ikerketek jakinarazi dute aldaketa horiek klima-aldaketak eragindakoak direla. Ikerketa honen helburua inpaktu horri buruzko informazio gehiago lortzea da. Horretarako, sakonera handiko uretako fitobentosaren osaerari eta ugaritasunari buruzko balioespena egin da. 2014. urteko udan 7 trantsektu ezarri ziren, Kobaroneko muturretik Muskizeko muturreraino. Trantsektu horiek aurretik ikertuak izan ziren 1982 eta 2007 urteetan, eta laginketa suntsitzailea egin zen. Analisi estatistikoek aldaketa esanguratsuak erakusten dituzte sakoneko (9-11m) komunitateetan azken 32 urteetan. Uraren tenperaturaren emendioa eta eguzki-erradiazio altuagoa detektatutako aldaketen erantzuleak izan daitezke neurri batean. Pterosiphonia complanata espezie esziafiloaren gainbeherak eta Cystoseira baccata eta Aphanocladia stichidiosa espezieen ugaritzeak hipotesi hori azaltzen dute. Espero genuenaren kontra, Gelidium corneum espeziea, sakontasun gutxiko uretan gainbehera bortitza jasaten ari dena, ez da 9 metrotik beherako sakonerara lekualdatu. Hala ere, ezin da ziurtatu egungo ingurumeneko baldintzak optimoak ez direnik G. corneum espeziearen garapenerako 9-11 metroko sakoneretan. Migrazio bertikal hori ez gertatzearen arrazoi onargarriena C. baccata- rekiko lehiakortasuna dela dirudi. Bestalde, C. baccata hiru dimentsiotako habitatak eratzeko gai den tamaina handiko alga bat da, espezie askorentzat babesleku gisa diharduena. Ondorioz, haren hedapenak G. corneum-ek sakonera txikiagoetan betetzen zuen funtzioa ordezka lezake neurri batean.

Village level processing techniques

The agar-bearing seaweeds Gracilaria and Gelidium grow abundantly in the Asia-Pacific region. Production and post-harvest techniques and methods for processing Gracilaria to produce agar suitable for local market is necessary to increase the meager income of coastal dwellers. A flow diagram of a village level agar production is provided. A guide is also given for the quality of dried seaweeds, which are divided into 3 classes.

Identification and assessing the cultivars of Laminaria Lamx. (phaeophyceae) with molecular markers

Molecular markers were used to identify and assess cultivars of Laminaria Lamx. and to delineate their phylogenetic relationships. Random amplified polymorphic DNA (RAPD) analysis was used for detection. After screening, 11 primers were selected and they yielded 133 bands in all, of which approximately 99.2% were polymorphic. The genetic distances between gametophytes ranged from 0.412 to 0.956. Two clusters were formed with the unweighted pair group method with arithmetic mean (UPGMA) dendrogram based on the simple matching coefficient. All cultivars of Laminaria japonica Aresch. used for breeding in China fell into one cluster. L. japonica from Japan, L. saccharina (L.) Lam., and L. angustata Kjellm. formed the other cluster and showed higher genetic variation than L. japonica from China. Nuclear ribosomal DNA (rDNA) sequences, including internal transcribed spacers (ITS1 and ITS2) were studied and aligned. The nucleotides of the sequences ranged from 634 to 668, with a total of 692 positions including TTS1, ITS2, and the 5.8S coding region. The phylogenetic tree obtained by the neighbor-joining method favored, to some extent, the results revealed by RAPD analysis. The present study indicates that RAPD and ITS analyses could be used to identify and assess Laminaria germplasm and to distinguish some species and, even intraspecies, in Laminaria.

A model for the simulation of macroalgal population dynamics and productivity

A mathematical model to simulate the population dynamics and productivity of macroalgae is described. The model calculates the biomass variation of a population divided into size-classes. Biomass variation in each class is estimated from the mass balance of carbon fixation, carbon release and demographic processes such as mortality and frond breakage. The transitions between the different classes are calculated in biomass and density units as a function of algal growth. Growth is computed from biomass variations using an allometric relationship between weight and length. Gross and net primary productivity is calculated from biomass production and losses over the period of simulation. The model allows the simulation of different harvesting strategies of commercially important species. The cutting size and harvesting period may be changed in order to optimise the calculated yields. The model was used with the agarophyte Gelidium sesquipedale (Clem.) Born. et Thur. This species was chosen because of its economic importance as a the main raw material for the agar industry. Net primary productivity calculated with it and from biomass variations over a yearly period, gave similar results. The results obtained suggest that biomass dynamics and productivity are more sensitive to the light extinction coefficient than to the initial biomass conditions for the model. Model results also suggest that biomass losses due to respiration and exudation are comparable to those resulting from mortality and frond breakage. During winter, a significant part of the simulated population has a negative net productivity. The importance of considering different parameters in the productivity light relationships in order to account for their seasonal variability is demonstrated with the model results. The model was implemented following an object oriented programming approach. The programming methodology allows a fast adaptation of the model to other species without major software development.

Four new exotic red seaweeds on European shores

We report the occurrence of four red macroalgae new to Europe. Two species were unambiguously determined to the species level with a DNA barcoding approach, while the remaining two species could only be assigned to a genus. Gelidium vagum was found in the Oosterschelde estuary (the Netherlands). Gracilariopsis chorda, Chondracanthus sp. and Solieria sp. were found in the Gulf of Morbihan in Brittany (France); Solieria sp. was also subsequently observed in the Thau Lagoon (France). Gelidium vagum and Gracilariopsis chorda are species originating from the north-western Pacific, around the Japanese archipelago. Phylogenetic analyses also show a likely Pacific origin for Chondracanthus sp. and Solieria sp. Three of these species are likely to have been introduced after 2008, indicating some active transport pathways between the Pacific and the north-eastern Atlantic. These findings also underline the importance of consistent and continuous local expertise (versus rapid assessment) in early warning systems.

Composition and temporal variation of the algal assemblage associated with the haplosclerid sponge Haliclona indistincta (Bowerbank)

Although interactions between seaweeds and sponges have been studied in detail, general information concerning the whole epibiontic algal assemblage associated with a sponge species is virtually non-existent. We present here the first study in which the macroalgal community associated with a sponge, Haliclona indistincta (Bowerbank), was examined in detail. In the period October 2009-September 2010, the seaweed assemblage epibiontic on H. indistincta at a site of the Irish West coast was composed of 66 algal taxa (48 red algae, 7 green algae, 11 brown algae). The red algae Gelidium spinosum and Rhodothamniella floridula were the only epibionts associated with H. indistincta for the whole annual cycle. Most of the algal epibionts were filamentous species, which colonized the surface of the sponge and did not penetrate deeply into it. The algal assemblage was most abundant and species-diverse in the period late winter-spring; multivariate analyses revealed a significant variation of the community on the temporal scale of season and sampling date (weeks to months). The results indicate that the algal communities associated with sponges may be very diverse, showing that this type of assemblage deserves further detailed studies. © 2012 Elsevier B.V.

In vitro fermentation and prebiotic potential of novel low molecular weight polysaccharides derived from agar and alginate seaweeds

Fermentation properties and prebiotic potential of novel low molecular weight polysaccharides (LMWPs) derived from agar and alginate bearing seaweeds was investigated. Ten LMWPs were supplemented to pH, temperature controlled anaerobic batch cultures inoculated with human feces from three donors, in triplicate. Microbiota changes were monitored using Fluorescent in-situ hybridization and short chain fatty acids, the fermentation end products were analysed using gas chromatography. Of the ten LMWPs tested, Gelidium seaweed CC2253 of molecular weight 64.64 KDa showed a significant increase in bifidobacterial populations from log(10) 8.06 at 0 h to log(10) 8.55 at 24 h (p = 0.018). For total bacterial populations, alginate powder CC2238 produced a significant increase from log(10) 9.01 at 0 h to log(10) 9.58 at 24 h (p = 0.032). No changes were observed in the other bacterial groups tested viz. Bacteroides, Lactobacilli/Enterococci, Eubacterium rectale/Clostridium coccoides and Clostridium histolyticum. The polysaccharides also showed significant increases in total SCFA production, particularly acetic and propionic acids, indicating that they were readily fermented. In conclusion, some LMWPs derived from agar and alginate bearing seaweeds were fermented by gut bacteria and exhibited potential to be used a novel source of prebiotics.

STICHOSIPHON-MANGLE SP-NOVA, A NEW CYANOPHYTE FROM MANGROVE ENVIRONMENTS

A new species of epiphytic Cyanophyceae, Stichosiphon mangle, is proposed. It differs from S. sansibaricus in the planes of cell division during exocyte formation and the habitat. Stichosiphon mangle was found on Inhaca Island, Mozambique (26-degrees-03'S, 32-degrees-57'E), growing up on Gelidium sp. and Murrayella sp. and on Cardoso Island, Brazil (25-degrees-10'S, 48-degrees-W, on Bostrychia spp.

Reproductive phenology of three species of Gelidiales (Rhodophyta) in two macroalgal communities from Tenerife (Atlantic Ocean, Canary Islands, Spain)

[EN] The reproductive phenology of three species of Gelidiales, Gelidium canariense, Gelidium arbuscula and Pterocladiella capillacea, was analysed seasonally for a period of one year in two localities on the West coast of Tenerife Atlantic Ocean, Canary Islands, Spain. Considerations are provided on sex ratio, maximum length and branch order of uprights and on the length of the thalli for each sexual and asexual phase of the Canary Islands populations. The three species were characterized by a high percentage of tetrasporophytes, while female and male gametophytes have been observed only in little proportion. Only G. canariense showed gametophytes in all seasons while the occurrence of gametophytes in G. arbuscula and Pterocladiella capillacea demonstrated a clear seasonality.

Contribution à l'étude du peuplement du littoral rocheux du Vietnam (sud)

In this part 1, after a brief description of the habitat, the author describes in details (in descending order) the supralittoral, littoral and infralittoral zones. The author describes many permanent groups of Cyanophyceae in the higher horizon of intertidal zone, the cosmopolitan group of Navicula Grevillei, Hildenbrandtia prototypus, the pantropical group of Calothrix pilosa, Chaetomorpha antennina, indopacific group of Dermonema Frappieri, Sargassum, Padina, Thatassia Hemprichii, Halophila. The group of cold or temperate habitat with Bangiophycideae are present in winter. Some are described, formed by the oysters, Vermetus or Cirripeds, or by the algae (Calothrix, Brachytrichia, Gelidium, Dermonema, Chaetomorpha).