Running Climate Models On The NERC Cluster Grid Using G-Rex

Compute grids are used widely in many areas of environmental science, but there has been limited uptake of grid computing by the climate modelling community, partly because the characteristics of many climate models make them difficult to use with popular grid middleware systems. In particular, climate models usually produce large volumes of output data, and running them usually involves complicated workflows implemented as shell scripts. For example, NEMO (Smith et al. 2008) is a state-of-the-art ocean model that is used currently for operational ocean forecasting in France, and will soon be used in the UK for both ocean forecasting and climate modelling. On a typical modern cluster, a particular one year global ocean simulation at 1-degree resolution takes about three hours when running on 40 processors, and produces roughly 20 GB of output as 50000 separate files. 50-year simulations are common, during which the model is resubmitted as a new job after each year. Running NEMO relies on a set of complicated shell scripts and command utilities for data pre-processing and post-processing prior to job resubmission. Grid Remote Execution (G-Rex) is a pure Java grid middleware system that allows scientific applications to be deployed as Web services on remote computer systems, and then launched and controlled as if they are running on the user's own computer. Although G-Rex is general purpose middleware it has two key features that make it particularly suitable for remote execution of climate models: (1) Output from the model is transferred back to the user while the run is in progress to prevent it from accumulating on the remote system and to allow the user to monitor the model; (2) The client component is a command-line program that can easily be incorporated into existing model work-flow scripts. G-Rex has a REST (Fielding, 2000) architectural style, which allows client programs to be very simple and lightweight and allows users to interact with model runs using only a basic HTTP client (such as a Web browser or the curl utility) if they wish. This design also allows for new client interfaces to be developed in other programming languages with relatively little effort. The G-Rex server is a standard Web application that runs inside a servlet container such as Apache Tomcat and is therefore easy to install and maintain by system administrators. G-Rex is employed as the middleware for the NERC1 Cluster Grid, a small grid of HPC2 clusters belonging to collaborating NERC research institutes. Currently the NEMO (Smith et al. 2008) and POLCOMS (Holt et al, 2008) ocean models are installed, and there are plans to install the Hadley Centre’s HadCM3 model for use in the decadal climate prediction project GCEP (Haines et al., 2008). The science projects involving NEMO on the Grid have a particular focus on data assimilation (Smith et al. 2008), a technique that involves constraining model simulations with observations. The POLCOMS model will play an important part in the GCOMS project (Holt et al, 2008), which aims to simulate the world’s coastal oceans. A typical use of G-Rex by a scientist to run a climate model on the NERC Cluster Grid proceeds as follows :(1) The scientist prepares input files on his or her local machine. (2) Using information provided by the Grid’s Ganglia3 monitoring system, the scientist selects an appropriate compute resource. (3) The scientist runs the relevant workflow script on his or her local machine. This is unmodified except that calls to run the model (e.g. with “mpirun”) are simply replaced with calls to "GRexRun" (4) The G-Rex middleware automatically handles the uploading of input files to the remote resource, and the downloading of output files back to the user, including their deletion from the remote system, during the run. (5) The scientist monitors the output files, using familiar analysis and visualization tools on his or her own local machine. G-Rex is well suited to climate modelling because it addresses many of the middleware usability issues that have led to limited uptake of grid computing by climate scientists. It is a lightweight, low-impact and easy-to-install solution that is currently designed for use in relatively small grids such as the NERC Cluster Grid. A current topic of research is the use of G-Rex as an easy-to-use front-end to larger-scale Grid resources such as the UK National Grid service.

Large-scale and synoptic meteorology in the south-east Pacific during the observations campaign VOCALS-REx in austral Spring 2008

We present a descriptive overview of the meteorology in the south eastern subtropical Pacific (SEP) during the VOCALS-REx intensive observations campaign which was carried out between October and November 2008. Mainly based on data from operational analyses, forecasts, reanalysis, and satellite observations, we focus on spatio-temporal scales from synoptic to planetary. A climatological context is given within which the specific conditions observed during the campaign are placed, with particular reference to the relationships between the large-scale and the regional circulations. The mean circulations associated with the diurnal breeze systems are also discussed. We then provide a summary of the day-to-day synoptic-scale circulation, air-parcel trajectories, and cloud cover in the SEP during VOCALS-REx. Three meteorologically distinct periods of time are identified and the large-scale causes for their different character are discussed. The first period was characterised by significant variability associated with synoptic-scale systems interesting the SEP; while the two subsequent phases were affected by planetary-scale disturbances with a slower evolution. The changes between initial and later periods can be partly explained from the regular march of the annual cycle, but contributions from subseasonal variability and its teleconnections were important. Across the whole of the two months under consideration we find a significant correlation between the depth of the inversion-capped marine boundary layer (MBL) and the amount of low cloud in the area of study. We discuss this correlation and argue that at least as a crude approximation a typical scaling may be applied relating MBL and cloud properties with the large-scale parameters of SSTs and tropospheric temperatures. These results are consistent with previously found empirical relationships involving lower-tropospheric stability.

Um osso para rex: as relações entre consumidor e animais de estimação e as suas influências no ato de presentear

The objective of the present work is to investigate gift-giving behavior between humans and their pets, and whether the relationship between human and pet affects the choice and purchase of these gifts. Theoretical support comes from works by Wolfinbarger (1990) who categorized the motivations underlying gift-giving, Belk & Coon (1993) who observed gift-giving as an economic exchange, Belk (1993) who approached gift-giving as an act of agapic love, and finally Hirschman (1994) who described many forms of relationship between consumers and their pets. The present study is of exploratory character. In-depth interviews were conducted so then the feelings and emotions of the informants, necessary to the analysis, could emerge. It was assumed that agapic, unconditional love, guided the gifts choice and purchase. Nevertheless, interpretation of the records shows that motivations which led the humans to give gifts to their pets were many. The work shows these motivations in a matrix. Records also indicate that it is difficult to establish the threshold between on motivation and the other.

Identificação e caracterização de elementos retrotransponíveis da família Rex do genoma de espécies do genêro Leporinus SPIX, 1829 (Teleostei: Anostomidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Chromosomal location of retrotransposable REX 1 in the genomes in five Prochilodus (Teleostei: Characiformes)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

The Pathologic Copepod Phrixocephalus cincinnatus (Copepoda: Pennellidae) in the Eye of Arrowtooth Flounder, Atherestes stomias, and Rex Sole, Glyptocephalus zachirus, from British Columbia

We report Phrixocephalus cincinnatus, a pennellid copepod infecting the eyes of flatfishes, from a single specimen of rex sole, Glyptocephalus zachirus, for the first time. In the typical host, the arrowtooth flounder, Atherestes stomias, the parasite occurred commonly in sampled populations from the Broughton Archipelago in British Columbia, infected primarily the right eye of the flounder, and on only one occasion presented more than two parasites per eye. The copepod attached to the choroid layer and ramified throughout the posterior compartment of the eye, resulting in the disruption of the retina and probably impairing host vision. Inflammation and hyperplasia progressed to necrosis and proliferation of connective tissue, resulting in the total destruction of the eye.

Rex prudens et sapiens. Semantica della regalità negli specula principum d'epoca tardomedievale (secoli XII-XV)

La ricerca di Roberta Frigeni, svolta ad ampio spettro diacronico, è condotta su di una campionatura di specula principum - editi ed inediti - elaborati tra XII e XV secolo, e ne indaga il linguaggio quale referente privilegiato, rilevandone persistenze terminologiche e nuclei sintagmatici ricorrenti, al fine di individuare concetti utili a delineare un lessico politico proprio di questa testualità, in corrispondenza al sorgere dell’entità statale europea nel XIII secolo (con particolare riguardo all’area francese, ai regni di Luigi IX e Filippo il Bello). A partire da un’analisi critica delle tesi di Quentin Skinner circa la ‘ridefinizione paradiastolica’ del sistema delle virtù classiche entro il trattato De principatibus, lo studio innesca un percorso di indagine à rebours che - sondando il linguaggio - rintraccia nella trattatistica delle institutiones regum del XV secolo (Pontano, Patrizi, Carafa, Platina) e degli specula principum medievali (Elinando di Froidmont, Gilberto di Tournai, Vincenzo di Beauvais, Guglielmo Peraldo, Egidio Romano, Guido Vernani) una consonanza di motivi nella sintassi e nell’immaginario preposti ad illustrare le potenzialità semantiche del nome di prudentia, individuata quale unica virtù sopravvissuta alla ‘ridescrizione’ del codice etico operata da Machiavelli. Indagando i progressivi ampliamenti del campo semantico sorto attorno al nome della virtù di prudenza entro la letteratura speculare, la ricerca mostra come il dialettico rapporto con i lessemi di sapientia, astutia, fides ed experientia abbia avuto un ruolo determinante per il sorgere di un’immagine del principe emancipata dalla figura biblica del “rex sapiens”, e per la formazione di un lessico ospitale delle manifestazioni concrete del vivere politico ed economico. I processi di dilatazione e rarefazione del bacino semantico di prudentia sono, infatti, funzionali ad illustrare come il linguaggio della testualità speculare registri l’acquisizione di nuove strumentazioni teoriche grazie al rinnovamento delle fonti a disposizione lungo il secolo XIII, che - sostituendo progressivamente il più recente dossier aristotelico al solo apparato veterotestamentario - permettono di integrare la concezione delle virtù in senso operativo, adattandola alle esigenze politico-economiche dei nuovi contesti istituzionali monarchici.

REXTRAP - ion accumulation, cooling and bunching for REX-ISOLDE

REX-ISOLDE ist ein Pilotexperiment zur Nachbeschleunigung radioaktiver Ionenstrahlen am on-line Massenseparator ISOLDE am CERN. Ein wichtiges Teilprojekt war die Realisierung der effizienten Umwandlung des kontinuierlichen niederenergetischen Ionenstrahles in kurze Ionenpulse hoher Qualität. Zu diesem Zweck wurde im Rahmen dieser Arbeit REXTRAP, eine gasgefüllte Penningfalle entwickelt, in Betrieb genommen und systematisch untersucht.

Begonia rex (Blatt-Begonie)

Von A. Sliwa

Ludovicus XIII. Dei Gratia, Galliæ, Franciæ, Et Navarræ Rex Christianissimus, Natus Anno MDCI, XXVII Septembris.

Signatur des Originals: S 36/G01492

Blüten : Begonia rex (weibl. Blüte ohne die Blütenblätter) - Aristolochia tricandata - Salvia patens - Aristolochia tricandata - Epidendrum ciliare

AR

Epidendrum ciliare - Begonia rex (weibl. Blüte ohne die Blütenblätter) - Aristolochia tricandata - Salvia patens

AR

T-REX: Bare electro-dynamic tape-tether technology experimetn on sounding rocket S520

The project to verify the performance of space tether technology was successfully demonstrated by the launch of the sounding rocket S520 the 25tu. The project is the space demonstration of science and engineering technologies of a bare tape electrodynamic tether (EDT) in the international campaign between Japan, USA, Europe and Australia. Method of "Inverse ORIGAMI (Tape tether folding)" was employed in order to deploy the bare tape EDT in a short period time of the suborbital flight. The deployment of tape tether was tested in a various experimental schemes on ground to show high reliability of tape tether deployment. The rocket was launched on the summer of 2010 and deployed a bare electro-dynamic tape tether with length 132.6 m, which is the world record of the length deployment of tape tether. The verification of tether technology has found a variety kind of science and technology results as the first in the humankind and will lead a large number of applications of space tether technologies

LPF Graham, Rex.1; Graham, Rex

June 1924