A Nonstationary Negative Binomial Time Series with Time-Dependent Covariates: Enterococcus Counts in Boston Harbor

Boston Harbor has had a history of poor water quality, including contamination by enteric pathogens. We conduct a statistical analysis of data collected by the Massachusetts Water Resources Authority (MWRA) between 1996 and 2002 to evaluate the effects of court-mandated improvements in sewage treatment. Motivated by the ineffectiveness of standard Poisson mixture models and their zero-inflated counterparts, we propose a new negative binomial model for time series of Enterococcus counts in Boston Harbor, where nonstationarity and autocorrelation are modeled using a nonparametric smooth function of time in the predictor. Without further restrictions, this function is not identifiable in the presence of time-dependent covariates; consequently we use a basis orthogonal to the space spanned by the covariates and use penalized quasi-likelihood (PQL) for estimation. We conclude that Enterococcus counts were greatly reduced near the Nut Island Treatment Plant (NITP) outfalls following the transfer of wastewaters from NITP to the Deer Island Treatment Plant (DITP) and that the transfer of wastewaters from Boston Harbor to the offshore diffusers in Massachusetts Bay reduced the Enterococcus counts near the DITP outfalls.

Special report of the United States Commissioners on Boston Harbor, on the relation of Mystic Pond and River to Boston Harbor, 1861.

Mode of access: Internet.

American signal book, or, The United States telegraph vocabulary; being an appendix to Elford's marine telegraph signal book ... adapted to the use of the new semaphoric telegraph : to which is added the Boston Harbor signal book /

Mode of access: Internet.

Boston Harbor Tunnel project, Winthrop, Massachusetts /

Shipping list no.: 97-0225-P.

Boston, Massachusetts Region, Digital Elevation Model with Bathymetry

This raster layer represents surface elevation and bathymetry data for the Boston Region, Massachusetts. It was created by merging portions of MassGIS Digital Elevation Model 1:5,000 (2005) data with NOAA Estuarine Bathymetric Digital Elevation Models (30 m.) (1998). DEM data was derived from the digital terrain models that were produced as part of the MassGIS 1:5,000 Black and White Digital Orthophoto imagery project. Cellsize is 5 meters by 5 meters. Each cell has a floating point value, in meters, which represents its elevation above or below sea level.

Boston Bay, Massachusetts, Nautical Chart, 1776 (Image 2 of 2) (Raster Image)

This layer is a georeferenced raster image of the untitled, historic nautical chart: [A chart of Boston Bay] (sheet originally published in 1776). The map is [sheet 19] from the Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England, from surveys taken by Samuel Holland and published by J.F.W. Des Barres, 1781. Scale [ca. 1:50,000]. This layer is image 2 of 2 total images of the two sheet source map, representing the eastern portion of the map. Covers the Massachusetts coastline north of Boston to Salem, south of Boston to Scituate, and portions of Boston Harbor and Massachusetts Bay. The image is georeferenced to the surface of the earth and fit to the 'World Mercator' (WGS 84) projected coordinate system. All map collar information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows coastal features such as harbors, inlets, rocks, channels, points, coves, shoals, islands, and more. Includes also selected land features such as cities and towns. Relief is shown by hachures; depths by soundings. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection. The entire Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England has been scanned and georeferenced as part of this selection.

Boston Bay, Massachusetts, Nautical Chart, 1776 (Image 1 of 2) (Raster Image)

This layer is a georeferenced raster image of the untitled, historic nautical chart: [A chart of Boston Bay] (sheet originally published in 1776). The map is [sheet 18] from the Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England, from surveys taken by Samuel Holland and published by J.F.W. Des Barres, 1781. Scale [ca. 1:50,000]. This layer is image 1 of 2 total images of the two sheet source map, representing the western portion of the map. Covers Boston and surroundings and portion of Boston Harbor. The image is georeferenced to the surface of the earth and fit to the 'World Mercator' (WGS 84) projected coordinate system. All map collar information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows coastal features such as harbors, inlets, rocks, channels, points, coves, shoals, islands, and more. Includes also selected land features such as cities and towns. Relief is shown by hachures; depths by soundings. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection. The entire Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England has been scanned and georeferenced as part of this selection.

Boston and vicinity, Massachusetts -- Water works, 1852 (Raster Image)

This layer is a georeferenced raster image of the historic paper map entitled: Map of the Boston water works, prepared under the direction of the Cochituate Water Board ; E.S. Chesbrough, city engineer ; drawn by Charles Perkins. It was published in 1852. Scale [1:38,400]. It covers the area Lake Cochituate (Natick, Framingham, Wayland) to Boston Harbor, and Everett to Dorchester, Massachusetts. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Massachusetts State Plane Coordinate System, Mainland Zone (in Feet) (Fipszone 2001). All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows water supply lines and features such as culverts, gatehouses, drains, waste weirs, tunnels, aqueducts, and reservoirs. Shows also features including roads, railroads, drainage, town boundaries, and more. Includes 2 profiles: Profile [of main branch] -- Profile of South Boston branch. Vertical scale [1:1,200]. This layer is part of a selection of digitally scanned and georeferenced historic maps of Massachusetts from the Harvard Map Collection. These maps typically portray both natural and manmade features. The selection represents a range of regions, originators, ground condition dates (1755-1922), scales, and purposes. The digitized selection includes maps of: the state, Massachusetts counties, town surveys, coastal features, real property, parks, cemeteries, railroads, roads, public works projects, etc.

Boston, Massachusetts and vicinity, showing Revolutionary War fortification sites, 1788 (Raster Image)

This layer is a georeferenced raster image of the historic paper map entitled: Boston with its environs, [by] T. Conder, sculpt. The map was originally published in: William Gordon's The history of the rise, progress, and establishment, of the independence of the United States of America, 1788. Scale [ca. 1:53,360]. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Massachusetts State Plane Coordinate System, Mainland Zone (in Feet) (Fipszone 2001). All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows Revolutionary War features such as positions of troops, redoubts, batteries, and forts, etc. It also shows features such as roads, drainage, selected public buildings and residences, and more. Relief is shown by hachures. This layer is part of a selection of digitally scanned and georeferenced historic maps of Massachusetts from the Harvard Map Collection. These maps typically portray both natural and manmade features. The selection represents a range of regions, originators, ground condition dates (1755-1922), scales, and purposes. The digitized selection includes maps of: the state, Massachusetts counties, town surveys, coastal features, real property, parks, cemeteries, railroads, roads, public works projects, etc.

Boston Bay (1886), Massachusetts 15 Minute Digital Raster Graphic

This layer is a digital raster graphic of the historic 15-minute USGS topographic map of the Boston Bay, Massachusetts quadrangle. The survey dates (ground condition) dates for this map are 1886 and 1887. This map includes coverage of Cohasset, Hull, Quincy, Marblehead, Lynn, Swampscott and, in general, the coastal areas encompassing Boston Harbor and the larger area of the Bay. The Boston Harbor Islands are also depicted. A digital raster graphic (DRG) is a scanned image of a U.S. Geological Survey (USGS) standard series topographic map, including all map collar information. The image inside the map neatline is geo-referenced to the surface of the earth and fit to the Universal Transverse Mercator projection. The horizontal positional accuracy and datum of the DRG matches the accuracy and datum of the source map. The names of quadrangles which border this one appear on the map collar in their respective positions (N,S,E,W) in relation to this map.

Boston Bay (1900), Massachusetts 15 Minute Digital Raster Graphic

This layer is a digital raster graphic of the historic 15-minute USGS topographic map of the Boston Bay (1900), Massachusetts quadrangle. The survey date (ground condition) of this map is 1899-1900, the edition date is July 1903, and this map was repinted in 1928. This map includes coverage of Cohasset, Hull, Quincy, Marblehead, Lynn, Swampscott and, in general, the coastal areas encompassing Boston Harbor and the larger area of the Bay. The Boston Harbor Islands are also depicted. A digital raster graphic (DRG) is a scanned image of a U.S. Geological Survey (USGS) standard series topographic map, including all map collar information. The image inside the map neatline is geo-referenced to the surface of the earth and fit to the Universal Transverse Mercator projection. The horizontal positional accuracy and datum of the DRG matches the accuracy and datum of the source map. The names of quadrangles which border this one appear on the map collar in their respective positions (N,S,E,W) in relation to this map.

Map of Boston for 1883.

Scale 1:19,800; 100 rods to an in.

Map of Cambridge and Somerville, Mass

"318 D."

Developed land, 1971

Shows forest and open space, pre-1971 development, and water in eastern Massachusetts.

Massachusetts Bay and Coastline, Nautical Chart, 1776 (Image 1 of 2) (Raster Image)

This layer is a georeferenced raster image of the untitled, historic nautical chart: [A chart of Massachusetts Bay & coast from Cape Ann to Cape Cod] (sheet originally published in 1776). The map is [sheet 15] from the Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England, from surveys taken by Samuel Holland and published by J.F.W. Des Barres, 1781. Scale [ca. 1:125,000]. This layer is image 1 of 2 total images of the two sheet source map, representing the western portion of the map. Covers coast of Massachusetts, Boston Harbor, and portion of Massachusetts Bay. The image is georeferenced to the surface of the earth and fit to the 'World Mercator' (WGS 84) projected coordinate system. All map collar information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows coastal features such as harbors, inlets, rocks, channels, points, coves, shoals, islands, and more. Includes also selected land features such as cities and towns. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection. The entire Atlantic Neptune atlas Vol. 3 : Charts of the coast and harbors of New England has been scanned and georeferenced as part of this selection.