Metagenômica: busca de novos genes envolvidos com a biodegradação de hidrocarbonetos

Industrial activities, oil spills and its derivatives, as well as the incomplete combustion of fossil fuels have caused a great accumulation of hydrocarbons in the environment. The number of microorganisms on the planet is estimated at 1030 and prokaryotes the most abundant. They colonized diverse environments for thousands of years, including those considered extreme and represent an untapped source of metabolic and genetic diversity with a large biotechnological potential. It is also known that certain microorganisms have the enzymatic capacity to degrade petroleum hydrocarbons and, in many ecosystems, there is an indigenous community capable of performing this function. The metagenomic has revolutionized the microbiology allowing access uncultured microbial communities, being a powerful tool for elucidation of their ecological functions and metabolic profiles, as well as for identification of new biomolecules. Thus, this study applied metagenomic approaches not only for functional selection of genes involved in biodegradation and emulsification processes of the petroleum-derived hydrocarbons, but also to describe the taxonomic and metabolic composition of two metagenomes from aquatic microbiome. We analyzed 123.116 (365 ± 118 bp) and 127.563 sequences (352 ± 120 bp) of marine and estuarine metagenomes, respectively. Eight clones were found, four involved in the petroleum biodegradation and four were able to emulsify kerosene indicating their abilities in biosurfactants synthesis. Therefore, the metagenomic analyses performed were efficient not only in the search of bioproducts of biotechnological interest and in the analysis of the functional and taxonomic profile of the metagenomes studied as well

Recuperação e purificação de ramnolipídeos produzidos por pseudomonas aeruginosa P029-GVIIA utilizando melaço de cana como substrato

Biosurfactants are molecules produced by microorganisms mainly bacteria as Pseudomonas and Bacillus. Among the biosurfactants, rhamnolipids play an important role due to their tensoactive as well as emulsifying properties. Besides can be produced in a well consolidated way the production costs of biosurfactants are quite expansive mainly if downstream processing is goning to be considered. Actually, attention has been given to identification of biosurfactants as well as optimization of its fermentative processes including downstream ones. This work deals with the development of strategies to recovery and purification of rhamnolipids produced by Pseudomonas aeruginosa P029-GVIIA using sugar-cane molasses as substrate. Broth free of cells was used in order to investigate the best strategies to recovery and purification produced by this system. Between the studied acids (HCl and H2SO4) for the acid precipitation step, HCl was the best one as has been showed by the experimental design 24. Extraction has been carried out using petroleum ether and quantification has been done using the thioglycolic acid method. Adsorption studies were carried out with activated carbon in a batch mode using a 24 experimental design as well as combined with an hydrophobic resin Streamline Phenyl aiming to separate the produced biosurfactant. Biosurfactant partial identification was carried out using High Performance Liquid Chromatography (HPLC). Experiments in batch mode showed that adsorption has been controlled mainly by pH and temperature. It was observed a reduction of 41.4% for the liquid phase and the solid phase it was possible to adsorb up to 15 mg of rhamnolipd/g of activated carbon. The kinetics of adsorption has been well fitted to a pseudo-first order reaction with velocity constant (k1) of 1.93 x 10-2 min-1. Experiments in packed bed ranging concentration on eluent (acetone) has been shown the highest recovery factor of 98% when pure acetone has been used. The combined effect if using activated carbon with an hydrophobic resin Streamline Phenyl has been shown successful for the rhamnolipids purification. It has been possible to purify a fraction of the crude broth with 98% of purity when the eluted of activated carbon packed bed was used with pure acetone

Prospecção de genes de interesse biotecnológico : uma abordagem metagenômica

The total number of prokaryotic cells on Earth has been estimated at 4 to 6x1030 and only about 1% of microorganisms present in the environment can be cultivated by standard techniques of cultivation and plating. Therefore, it is a huge biological and genetic pool that can be exploited, for the identification and characterization of genes with biotechnological potential. Within this perspective, the metagenomics approach was applied in this work. Functional screening methods were performed aiming to identify new genes related to DNA repair and / or oxidative stress resistance, hydrocarbon degradation and hydrolytic activities (lipase, amylase and protease). Metagenomic libraries were built utilizing DNA extracted from soil samples collected in João Câmara RN. The libraries were analyzed functionally using specific substrate containing solid medium (hydrolytic activity), supplemented with H2O2 (DNA repair and / or resistance to oxidative stress) and liquid medium supplemented with light Arabian oil (activity, degradation of hydrocarbons). After confirmation of activity and exclusion of false-positive results, 49 clones were obtained, being 2 positive for amylase activity, 22 resistant to oxidative stress generated by H2O2 and 25 clones active for hydrocarbons degradation. Analysis of the sequences showed hypothetical proteins, dienelactona hydrolase, DNA polymerase, acetyltransferase, phosphotransferase, methyltransferase, endonucleases, among other proteins. The sequence data obtained matched with the functions tested, highlighting the success of metagenomics approaches combined with functional screening methods, leading to very promising results

Biodegradação de derivados do petróleo com a aplicação de biossurfactante produzido por Bacillus subtilis

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

A influência dos elementos traços , (B, Cu, Mn, Mo e Zn) na produção de ramnolipídios por pseudomonas aeruginosa LBI

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Investigação dos efeitos tóxicos do biossurfactante ramnolipídio e suas implicações quando usado na biorremediação de águas contaminadas por petróleo

Pós-graduação em Ciências Biológicas (Biologia Celular e Molecular) - IBRC

Avaliação do potencial de biorremediação de solos e de águas subterrâneas contaminados com óleo diesel

Pós-graduação em Geociências e Meio Ambiente - IGCE

Estudo da produção de metabólitos por Pseudomonas aeruginosa: Ramnolipídios e Polihidroxialcanoatos (PHAs)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Produção de ramnolipídios por mutantes de Pseudomonas aeruginosa LBI

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Desenvolvimento de estratégias de alimentação para produção de ramnolipídios por Pseudomonas aeruginosa LBI 2A1 em biorreator

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Biorremediação de solo contaminado com óleo lubrificante pela aplicação de diferentes soluções de surfactante químico e biossurfactante produzido por Pseudomonas aeruginosa LBI

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Produção de ramnolipídios por linhagens de Pseusomonas aeruginosa em diferentes fontes de carbono e condições de cultivo

Os biossurfactantes, moléculas tenso-ativas sintetizadas por microrganismos, apresentam propriedades biológicas e superficiais que podem ser aplicadas a processos industriais diversos. Apesar das vantagens apresentadas, não são amplamente utilizados pela indústria, devido ao alto custo de produção, baixa produtividade e uso de substratos caros. Bactérias do gênero Pseudomonas são conhecidas por sintetizarem ramnolipídios, moléculas tenso-ativas promissoras em termos de produção industrial, por apresentarem excelentes propriedades tenso-ativas, além de características físico-químicas e biológicas que permitem a obtenção em concentrações superiores a outros biossurfactantes. O uso de substratos alternativos seria uma estratégia que facilitaria o desenvolvimento industrial de sua produção. A proposta deste trabalho é dar continuidade ao estudo da produção de ramnolipídios a partir de substratos não-convencionais (n-parafina, óleos vegetais utilizados em frituras, glicerol) por isolados de P. aeruginosa.

Produção e aplicação de ramnolipídios produzidos por Pseudomonas aeruginosa LBI 2A1

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Avaliação do efeito do tratamento com surfactante químico e Pseudomonas aeruginosa LBI na toxicidade de solo contaminado com óleo lubrificante usado

Petroleum and its subproducts are considered a treat for the environmental quality because of the many environmental accidents that may occur during exploitation, transport and storage. A common remediation technique used in the contaminated areas is based on the use of surfactants, mainly the chemical ones, because they have low production costs. In the other hand, some microorganisms have indicate capacities of producing surfactants that emulsify substances and as result, offer a bigger contact surface for the microbiota degradation. This biossurfactants stand out in comparison with the chemical surfactants because they present lower micelar concentration values, are more tolerant for temperature and pH variation, because they are biodegradable, have low toxicity, higher emulsification and hydrocarbon solubilization index. In this way, after the surfactant application, a toxicity evaluation have to be made to identify the treatment effects. In soil, the activity of some microbial enzymes can show the environmental behavior of the contaminant under different treatment conditions. Dehydrogenase is one example of those enzymes that can demonstrate indirectly the effect of the pollutant on the soil microorganisms. The aim of this paper was to evaluate the toxicity after the addition of a surfactant and/or Pseudomonas aeruginosa LBI in soil contaminated by a mineral automotive lubricant. The previous mentioned bacteria are a potential biossurfactant (rhamnolipid) producer. In order to evaluate the toxicity, the dehydrogenase test was run. In this test, trifeniltetrazolium compound (TTC) after utilized as an electron acceptor, turns into trifenil formazan (TPF), that can be indirectly quantified using the absorbance measured by the spectrophotometer UV-visible. In this way, it was possible to quantify the dehydrogenase activity from the contaminated soil samples... (Complete abstract click electronic access below)

Estudo dos micronutrientes na produção de ramnolipídios por mutante de Pseudomonas aeruginosa LBI

Os biossurfactantes apresentam inúmeras vantagens, como baixa toxicidade, biodegradabilidade e alta estabilidade, mas não são amplamente utilizados devido ao custo de produção. A utilização de substratos baratos, linhagens mutantes que associados à otimização das condições de cultivo pode levar a uma redução nos custos, possibilitando assim a substituição dos surfactantes sintéticos pelos biológicos. Uma maneira empregada para maximizar a produção dos biossurfactantes é a limitação de nutrientes. Os esforços empregados nesse sentido são direcionado para as proporções carbono: nitrogênio, entretanto os efeitos dos elementos traços são pouco conhecidos. Devido a esses fatores, o presente trabalho avaliou a importância dos seguintes elementos traços: ferro, zinco, cobalto, cobre, manganês e do sal citrato de sódio dihidratado, nas fermentações realizadas utilizando o mutante de Pseudomonas aeruginosa LBI 2A1. Para tanto foram realizadas fermentações em frascos Erlenmeyer, onde se utilizou diferentes concentrações desses elementos. A influência dos mesmos na produção de ramnolipídios foi constatada, uma vez que a produção desse biotensoativo foi aumentada em mais de três vezes alterando apenas a concentração de um único elemento traço (Fe). Os experimentos realizados permitem, também, inferir a respeito das melhores concentrações desses micronutrientes para a produção de ramnolipídios