Geochemistry of pore water and sediments from Exmouth Plateau

During Leg 122, a transect was drilled across the Wombat Plateau, a marginal spur of the Exmouth Plateau, complemented by two sites on the Exmouth Plateau proper. In this report, pore-water analyses for major seawater constituents, alkalinity, Ba, Fe, Mn, Li, Sr, Rb, and silica are presented. Large gradients in the pore-water profiles provide evidence of complex sediment/pore-water interactions associated with carbonate and silica diagenesis and the formation of authigenic minerals. Diffusion affects pore-water profiles but differs considerably from site to site. Advection of freshwater, probably of continental origin, helps maintain negative Cl and salinity gradients deep within the sediments of the Exmouth Plateau.

Cenozoic nannofossils from the Exmouth Plateau, eastern Indian Ocean

Six sites (759-764) were drilled on the Exmouth Plateau during Ocean Drilling Program Leg 122. Nannofossilrich Cenozoic sediments were recovered at all six sites, reflecting the open-ocean conditions that prevailed over the Exmouth Plateau during the Cenozoic. Calcareous nannofossils are abundant, diverse (250 different species identified), and generally well preserved throughout the composite lower Paleocene to Quaternary section. The diversity and preservation of nannofossils permits a high degree of stratigraphic resolution at each site. Site 762 on the central part of the Exmouth Plateau contains an almost unbroken Cenozoic record (only Miocene Zones NN3, NN8, and NN10 are missing). This site may prove to be a useful Cenozoic biostratigraphic and biomagnetochronologic reference section for the eastern Indian Ocean.

Mutational analysis of active-site residues in the Mycobacterium leprae RecA intein, a LAGLIDADG homing endonuclease: Asp(122) and Asp(193) are crucial to the double-stranded DNA cleavage activity whereas Asp(218) is not

Mycobacterium leprae recA harbors an in-frame insertion sequence that encodes an intein homing endonuclease (PI-MleI). Most inteins (intein endonucleases) possess two conserved LAGLIDADG (DOD) motifs at their ctive center. A common feature of LAGLIDADG-type homing endonucleases is that they recognize and cleave the same or very similar DNA sequences. However, PI-MleI is distinctive from other members of the family of LAGLIDADG-type HEases for its modular structure with functionally separable domains for DNA-binding and cleavage, each with distinct sequence preferences. Sequence alignment analyses of PI-MleI revealed three putative LAGLIDADG motifs; however, there is conflicting bioinformatics data in regard to their identity and specific location within the intein polypeptide. To resolve this conflict and to determine the active-site residues essential for DNA target site recognition and double-stranded DNA cleavage, we performed site-directed mutagenesis of presumptive catalytic residues in the LAGLIDADG motifs. Analysis of target DNA recognition and kinetic parameters of the wild-type PI-MleI and its variants disclosed that the two amino acid residues, Asp(122) (in Block C) and Asp(193) (in functional Block E), are crucial to the double-stranded DNA endonuclease activity, whereas Asp(218) (in pseudo-Block E) is not. However, despite the reduced catalytic activity, the PI-MleI variants, like the wild-type PI-MleI, generated a footprint of the same length around the insertion site. The D122T variant showed significantly reduced catalytic activity, and D122A and D193A mutations although failed to affect their DNA-binding affinities, but abolished the double-stranded DNA cleavage activity. On the other hand, D122C variant showed approximately twofold higher double-stranded DNA cleavage activity, compared with the wild-type PI-MleI. These results provide compelling evidence that Asp(122) and Asp(193) in DOD motif I and II, respectively, are bona fide active-site residues essential for DNA cleavage activity. The implications of these results are discussed in this report.

Sapientia, 1976, Vol. XXXI, nº 122 (número completo)

Contenido: Verdad, historia y hermenéutica / Octavio N. Derisi – El lumen naturale en Santo Tomás y el essere ideale en Rosmini / William R. Darós – El constitutivo esencial de la persona / Octavio N. Derisi – Filosofía y desarrollo integral / Alberto Caturelli – La respuesta del hombre frente a lo existente : intuición y palabra / Osvaldo Francella – Notas y comentarios -- Bibliografía