Effect of changing data collection parameters on statistical motor unit number estimates

The effect of number of samples and selection of data for analysis on the calculation of surface motor unit potential (SMUP) size in the statistical method of motor unit number estimates (MUNE) was determined in 10 normal subjects and 10 with amyotrophic lateral sclerosis (ALS). We recorded 500 sequential compound muscle action potentials (CMAPs) at three different stable stimulus intensities (10–50% of maximal CMAP). Estimated mean SMUP sizes were calculated using Poisson statistical assumptions from the variance of 500 sequential CMAP obtained at each stimulus intensity. The results with the 500 data points were compared with smaller subsets from the same data set. The results using a range of 50–80% of the 500 data points were compared with the full 500. The effect of restricting analysis to data between 5–20% of the CMAP and to standard deviation limits was also assessed. No differences in mean SMUP size were found with stimulus intensity or use of different ranges of data. Consistency was improved with a greater sample number. Data within 5% of CMAP size gave both increased consistency and reduced mean SMUP size in many subjects, but excluded valid responses present at that stimulus intensity. These changes were more prominent in ALS patients in whom the presence of isolated SMUP responses was a striking difference from normal subjects. Noise, spurious data, and large SMUP limited the Poisson assumptions. When these factors are considered, consistent statistical MUNE can be calculated from a continuous sequence of data points. A 2 to 2.5 SD or 10% window are reasonable methods of limiting data for analysis. Muscle Nerve 27: 320–331, 2003

Model-based clustering in gene expression microarrays: An application to breast cancer data

In microarray studies, the application of clustering techniques is often used to derive meaningful insights into the data. In the past, hierarchical methods have been the primary clustering tool employed to perform this task. The hierarchical algorithms have been mainly applied heuristically to these cluster analysis problems. Further, a major limitation of these methods is their inability to determine the number of clusters. Thus there is a need for a model-based approach to these. clustering problems. To this end, McLachlan et al. [7] developed a mixture model-based algorithm (EMMIX-GENE) for the clustering of tissue samples. To further investigate the EMMIX-GENE procedure as a model-based -approach, we present a case study involving the application of EMMIX-GENE to the breast cancer data as studied recently in van 't Veer et al. [10]. Our analysis considers the problem of clustering the tissue samples on the basis of the genes which is a non-standard problem because the number of genes greatly exceed the number of tissue samples. We demonstrate how EMMIX-GENE can be useful in reducing the initial set of genes down to a more computationally manageable size. The results from this analysis also emphasise the difficulty associated with the task of separating two tissue groups on the basis of a particular subset of genes. These results also shed light on why supervised methods have such a high misallocation error rate for the breast cancer data.

Zygosity Diagnosis in the Absence of Genotypic Data: An Approach Using Latent Class Analysis

For zygosity diagnosis in the absence of genotypic data, or in the recruitment phase of a twin study where only single twins from same-sex pairs are being screened, or to provide a test for sample duplication leading to the false identification of a dizygotic pair as monozygotic, the appropriate analysis of respondents' answers to questions about zygosity is critical. Using data from a young adult Australian twin cohort (N = 2094 complete pairs and 519 singleton twins from same-sex pairs with complete responses to all zygosity items), we show that application of latent class analysis (LCA), fitting a 2-class model, yields results that show good concordance with traditional methods of zygosity diagnosis, but with certain important advantages. These include the ability, in many cases, to assign zygosity with specified probability on the basis of responses of a single informant (advantageous when one zygosity type is being oversampled); and the ability to quantify the probability of misassignment of zygosity, allowing prioritization of cases for genotyping as well as identification of cases of probable laboratory error. Out of 242 twins (from 121 like-sex pairs) where genotypic data were available for zygosity confirmation, only a single case was identified of incorrect zygosity assignment by the latent class algorithm. Zygosity assignment for that single case was identified by the LCA as uncertain (probability of being a monozygotic twin only 76%), and the co-twin's responses clearly identified the pair as dizygotic (probability of being dizygotic 100%). In the absence of genotypic data, or as a safeguard against sample duplication, application of LCA for zygosity assignment or confirmation is strongly recommended.

Systematic characterization of mutations in yeast acetohydroxyacid synthase: Interpretation of herbicide-resistance data

Acetohydroxyacid synthase (AHAS, EC 4.1.3.18) catalyses the first step in branched-chain amino acid biosynthesis and is the target for sulfonylurea and imidazolinone herbicides, which act as potent and specific inhibitors. Mutants of the enzyme have been identified that are resistant to particular herbicides. However, the selectivity of these mutants towards various sulfonylureas and imidazolinones has not been determined systematically. Now that the structure of the yeast enzyme is known, both in the absence and presence of a bound herbicide, a detailed understanding of the molecular interactions between the enzyme and its inhibitors becomes possible. Here we construct 10 active mutants of yeast AHAS, purify the enzymes and determine their sensitivity to six sulfonylureas and three imidazolinones. An additional three active mutants were constructed with a view to increasing imidazolinone sensitivity. These three variants were purified and tested for their sensitivity to the imidazolinones only. Substantial differences are observed in the sensitivity of the 13 mutants to the various inhibitors and these differences are interpreted in terms of the structure of the herbicide-binding site on the enzyme.

New species of Bakeriella (Hymenoptera, Bethylidae) from the New World and new data on geographic distribution

Bakeriella lata sp. nov. (Brazil, Rondônia), Bakeriella aurata sp. nov. (Brazil, Amazonas) and Bakeriella sulcaticeps sp. nov. (Brazil, Amazonas) are described and illustrated. New geographic records and variation data for B. cristata Evans, 1964, B. floridana Evans, 1964, B. flavicornis Kieffer, 1910, B. incompleta Azevedo, 1994, B. mira Evans, 1997, B. montivaga (Kieffer, 1910), B. olmeca Evans, 1964 and B. subcarinata Evans, 1965 are provided. The male of B. incompleta is described for the first time.

Influência da luminosidade na fisiologia e morfoanatomia de jequitibá branco (Cariniana estrellensis (Raddi.) Kuntze) e jequitibá rosa (Cariniana legalis (Mart.) Kuntze)

Cariniana estrellensis (Raddi.) Kuntze e C. legalis (Mart.) Kuntze são arbóreas nativas do Brasil que, além de possuírem alto poder econômico, são objeto de interesse em programas de recuperação de áreas degradadas e em plantios comerciais. A escassez de informações relacionadas ao desempenho ecofisiológico dessas espécies em condições ambientais estressantes dificultam o manejo e conservação das mesmas. Dessa forma, o presente estudo objetivou avaliar a ecofisiologia das espécies em um gradiente de irradiância, por meio de dois experimentos. No experimento 1, plantas de C. estrellensis com 12 meses de idade foram submetidas a quatro tratamentos: 40%, 50%, 70% e 100% de irradiância, durante 104 dias. Ao final desse período foram feitas análises de crescimento, do conteúdo de pigmentos fotossintéticos, de trocas gasosas, da fluorescência da clorofila a, do conteúdo foliar de carboidratos solúveis, das características anatômicas foliares e caulinares e da plasticidade fenotípica da espécie. No experimento 2, plantas de C. estrellensis e C. legalis com 14 meses de idade foram submetidas a dois tratamentos: 30% e 100% de irradiância (sombra e sol, respectivamente), durante 30 dias. Ao final desse período foram feitas análises do estresse oxidativo das espécies, por meio da quantificação da atividade das enzimas catalase e peroxidase do ascorbato e por meio da quantificação do conteúdo foliar de pigmentos fotossintéticos. No experimento 1, em 70% de irradiância, as plantas apresentaram melhor crescimento em altura e diâmetro, maior massa seca de folhas (MSF), de caule (MSC) e de raiz (MSR). Em 70% e 100% de irradiância, as plantas apresentaram folhas menores (AFU) e mais espessas (AFE e MFE) resultando em menor área foliar total (AFT). Nesses tratamentos as plantas também apresentaram menor conteúdo foliar de clorofila a (Chl a) e b (Chl b), porém, maior razão Chl a/b e maior conteúdo de carotenóides, o que implicou em menor razão Chl a/Carot. Taxas fotossintéticas maiores foram encontradas nas plantas em 70% e inibidas em 40% e 50%, em função da baixa irradiância solar, e em 100%, possivelmente pela ocorrência de fotoinibição, como mostraram os parâmetros do fluxo de energia do fotossistema II. De acordo com a análise da fluorescência da clorofila a, em pleno sol, as plantas apresentaram menor densidade de centros de reação ativos (RC/ABS) e maior dissipação de energia (DI0/ABS), culminando com menor desempenho do fotossistema II (PIabs) e desempenho total (PITotal). O conteúdo foliar de carboidratos solúveis foi maior nas plantas em 70%, seguido das plantas em 100% de irradiância, com exceção da glicose, que não variou entre os tratamentos. A maior espessura encontrada nas folhas sob 100% de irradiância foi em função da maior espessura das epidermes adaxial e abaxial e dos parênquimas paliçádico e esponjoso. E o maior diâmetro do caule em 70% de irradiância se deu pela maior espessura do xilema e floema secundários. No experimento 2, as plantas em pleno sol de ambas as espécies também apresentaram menor conteúdo foliar de clorofila a (Chl a) e b (Chl b) e maior razão Chl a/b. No entanto, o conteúdo de carotenóides foi maior, o que implicou em menores razões Chl a/Carot. A atividade da catalase (CAT) variou em função do tempo e da espécie, apresentando uma queda em C. estrellensis aos 16 dias, possivelmente em função de fotoinativação, e um aumento em C. legalis aos 30 dias. Já a atividade da peroxidase do ascorbato (APX) não variou em função do tempo, da espécie ou dos tratamentos. O estudo da plasticidade fenotípica mostrou que C. estrellensis é uma espécie plástica, principalmente em função das variáveis de fotossíntese e trocas gasosas, sendo capaz de sobreviver no gradiente de irradiância testado, o que viabiliza o seu uso em projetos de recuperação de áreas degradadas. E, uma vez que as análises ecofisiológicas mostraram que C. estrellensis e C. legalis apresentaram melhor desempenho em luminosidade moderada, sugere-se que ambas comportaram-se como espécies intermediárias no processo de sucessão florestal. No entanto, uma vez que a concentração de pigmentos foliares e a produção de enzimas antioxidantes inferiram maior susceptibilidade de C. estrellensis à fotoinibição em alta irradiância, sugere-se maior viabilidade do uso de C. legalis em projetos de recuperação de áreas degradas.

Iogurte simbiótico de açaí (Euterpe edulis Mart.): caracterização físico-química e viabilidade de bactérias láticas e probióticas

Os iogurtes simbióticos, que combinam microrganismos probióticos e substâncias prebióticas, adicionados de polpa de frutas são uma tendência crescente no mercado. O fruto açaí (Euterpe edulis) se destaca pela presença de compostos bioativos, como as antocianinas. Neste contexto, o presente trabalho teve como objetivo caracterizar e avaliar os parâmetros físico-químicos e a viabilidade microbiológica de iogurte simbiótico de açaí enriquecido com inulina e adicionado de cultura probiótica de Bifidobacterium animallis subsp. lactis BB-12. As formulações de iogurte atenderam aos requisitos físico-químicos exigidos pela IN no 46/2007 do MAPA apresentando teor de cinzas de 0,86 % ± 0,10, extrato seco total de 23,18 % ± 2,59, teor de gordura de 4,16 % ± 0,31, acidez de 0,70 % ± 0,05 e pH de 4,45 ± 0,10. Entre as formulações o conteúdo fenólico total variou de 18,17 a 117,84 mg de AGE/100 g, teor de antocianinas de 1,92 a 47,88 mg/100 g e atividade antioxidante de 0,71 a 6,95 μmol Trolox/g, observando-se um aumento de acordo com o aumento do teor de polpa de açaí adicionada. Ao final de 28 dias de armazenamento a 5 °C, observou-se uma redução no teor de antocianinas e da atividade antioxidante. Verificou-se a contribuição positiva da polpa de açaí na viabilidade das bactérias láticas totais, cujas contagens variaram de 4,56 a 7,04 log UFC.g-1 e de B. lactis BB-12 que variou de 3,17 a 6,34 log UFC.g-1, favorecendo a multiplicação dessas bactérias nos iogurtes. Nas formulações com 20 e 25 % de polpa de açaí as contagens das bactérias láticas totais e probiótica mantiveram-se viáveis de acordo com a IN no 46/2007 do MAPA e a Lista de Alegação de Propriedade Funcional (Anvisa), durante os 28 dias de armazenamento a 5 oC. Concluiu-se que a adição de polpa de açaí E. edulis, inulina e B. lactis BB-12 foi tecnologicamente viável na elaboração de iogurte simbiótico de açaí, sendo uma excelente alternativa de diversificação do produto no mercado.

Conservação pós-colheita de bacuri (Platonia insignis Mart.) sob refrigeração e embalado em PVC

Nos últimos anos, o bacuri vem se destacando dentre as frutas nativas, de elevado valor socioeconômico, pelas amplas possibilidades de utilização. É amplamente usado pela população amazônica e pode ser encontrado em supermercados de várias cidades. Neste trabalho objetivou-se avaliar o potencial de conservação de frutos do bacurizeiro armazenados em diferentes temperaturas de refrigeração e recobertos com filme de PVC por um período de 36 dias. Houve diminuição dos valores de sólidos solúveis totais, acidez total titulável e açúcares e aumento do pH durante o armazenamento para todas as temperaturas avaliadas, enquanto os valores de clorofila apresentaram grandes variações ao longo do período de armazenamento.

Privacy and Data Protection in Elderly Healthcare: Threats and Legal Warranties

The progressive aging of the population requires new kinds of social and medical intervention and the availability of different services provided to the elder population. New applications have been developed and some services are now provided at home, allowing the older people to stay home instead of having to stay in hospitals. But an adequate response to the needs of the users will imply a high percentage of use of personal data and information, including the building up and maintenance of user profiles, feeding the systems with the data and information needed for a proactive intervention in scheduling of events in which the user may be involved. Fundamental Rights may be at stake, so a legal analysis must also be considered.

The need for standardized tests to evaluate the reliability of data transport in wireless medical systems

Wireless medical systems are comprised of four stages, namely the medical device, the data transport, the data collection and the data evaluation stages. Whereas the performance of the first stage is highly regulated, the others are not. This paper concentrates on the data transport stage and argues that it is necessary to establish standardized tests to be used by medical device manufacturers to provide comparable results concerning the communication performance of the wireless networks used to transport medical data. Besides, it suggests test parameters and procedures to be used to produce comparable communication performance results.

A brief survey on online analysis of movement data

The increasing availability of mobility data and the awareness of its importance and value have been motivating many researchers to the development of models and tools for analyzing movement data. This paper presents a brief survey of significant research works about modeling, processing and visualization of data about moving objects. We identified some key research fields that will provide better features for online analysis of movement data. As result of the literature review, we suggest a generic multi-layer architecture for the development of an online analysis processing software tool, which will be used for the definition of the future work of our team.

COORDINSPECTOR: a tool for extracting coordination data from legacy code

More and more current software systems rely on non trivial coordination logic for combining autonomous services typically running on different platforms and often owned by different organizations. Often, however, coordination data is deeply entangled in the code and, therefore, difficult to isolate and analyse separately. COORDINSPECTOR is a software tool which combines slicing and program analysis techniques to isolate all coordination elements from the source code of an existing application. Such a reverse engineering process provides a clear view of the actually invoked services as well as of the orchestration patterns which bind them together. The tool analyses Common Intermediate Language (CIL) code, the native language of Microsoft .Net Framework. Therefore, the scope of application of COORDINSPECTOR is quite large: potentially any piece of code developed in any of the programming languages which compiles to the .Net Framework. The tool generates graphical representations of the coordination layer together and identifies the underlying business process orchestrations, rendering them as Orc specifications

Criminal Liability of Organizations, Corporations, Legal Persons, and Similar Entities on Law of Portuguese Cybercrime: A Brief Discussion on the Issue of Crimes of “False Information,” the “Damage on Other Programs or Computer Data,” the “Computer-Software Sabotage,” the “Illegitimate Access,” the “Unlawful Interception,” and “Illegitimate Reproduction of the Protected Program”

Abstract: in Portugal, and in much of the legal systems of Europe, «legal persons» are likely to be criminally responsibilities also for cybercrimes. Like for example the following crimes: «false information»; «damage on other programs or computer data»; «computer-software sabotage»; «illegitimate access»; «unlawful interception» and «illegitimate reproduction of protected program». However, in Portugal, have many exceptions. Exceptions to the «question of criminal liability» of «legal persons». Some «legal persons» can not be blamed for cybercrime. The legislature did not leave! These «legal persons» are v.g. the following («public entities»): legal persons under public law, which include the public business entities; entities utilities, regardless of ownership; or other legal persons exercising public powers. In other words, and again as an example, a Portuguese public university or a private concessionaire of a public service in Portugal, can not commit (in Portugal) any one of cybercrime pointed. Fair? Unfair. All laws should provide that all legal persons can commit cybercrimes. PS: resumo do artigo em inglês.