Interval multivariate curve resolution in the dereplication of HPLC-DAD data from Jatropha gossypifolia

Introduction Jatropha gossypifolia has been used quite extensively by traditional medicine for the treatment of several diseases in South America and Africa. This medicinal plant has therapeutic potential as a phytomedicine and therefore the establishment of innovative analytical methods to characterise their active components is crucial to the future development of a quality product. Objective To enhance the chromatographic resolution of HPLC-UV-diode-array detector (DAD) experiments applying chemometric tools. Methods Crude leave extracts from J. gossypifolia were analysed by HPLC-DAD. A chromatographic band deconvolution method was designed and applied using interval multivariate curve resolution by alternating least squares (MCR-ALS). Results The MCR-ALS method allowed the deconvolution from up to 117% more bands, compared with the original HPLC-DAD experiments, even in regions where the UV spectra showed high similarity. The method assisted in the dereplication of three C-glycosylflavones isomers: vitexin/isovitexin, orientin/homorientin and schaftoside/isoschaftoside. Conclusion The MCR-ALS method is shown to be a powerful tool to solve problems of chromatographic band overlapping from complex mixtures such as natural crude samples. Copyright © 2013 John Wiley & Sons, Ltd. Extracts from J. gossypifolia were analyzed by HPLC-DAD and, dereplicated applying MCR-ALS. The method assisted in the detection of three C-glycosylflavones isomers: vitexin/isovitexin, orientin/homorientin and schaftoside/isoschaftoside. The application of MCR-ALS allowed solving problems of chromatographic band overlapping from complex mixtures such as natural crude samples. Copyright © 2013 John Wiley & Sons, Ltd.

Evaluation of lines of boron, phosphorus and sulfur by high-resolution continuum source flame atomic absorption spectrometry for plant analysis

The wavelength-integrated absorbance (WIA) and summation of absorbance (∑ lines) of different lines were evaluated to enhance sensitivity and determine B, P and S in medicinal plants by HR-CS FAAS. The lowest LOD for B (0.5mgL-1) and P (13.7mgL-1) was obtained by integration of lines 249.773nm (3pixels) and 247.620nm (5pixels), respectively. The ∑ lines for CS at 257.595nm and 257.958nm furnished LOD=30.5mgL-1, ca. 10% lower than the LOD obtained for the WIA using 257.595nm and 5pixels. Data showed the advantage of WIA over ∑ lines to improve sensitivity for all analytes. Under optimized conditions, calibration curves in the 1.0-100mgL-1 B and 50.0-2000mgL-1 P, S ranges were consistently obtained. Results obtained with the HR-CS FAAS method were in agreement at 98% and 95% confidence level with certified values for B and P, respectively. And results for S were in accordance to non-certified values. Concentrations of B, P, and S in 12 medicinal plants analyzed by the proposed method varied within the 19.4-34.5mgkg-1 B, 719-3910mgkg-1 P and 1469-7653mgkg-1 S ranges. © 2012 Elsevier B.V.

Simple procedure for nutrient analysis of coffee plant with energy dispersive X-ray fluorescence spectrometry (EDXRF)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Plant regulators on vegetative growth of 'Tommy Atkins' mangoes

Paclobutrazol applied to the soil is used for the production management of mango in most of orchards on the semiarid region. However, it is necessary to identify other plant growth regulators that might be applied to the leaves, so as to minimize the risk of residues in the soil and plant. The present paper has the purpose to evaluate the effect of plant regulators in the management of vegetative growth on mangoes 'Tommy Atkins'. Three plant growth regulators, sprayed to the leaves, were evaluated: prohexadione-Ca, ethyl-trinexapac and chlormequat chloride, applied in two dosages, and compared to paclobutrazol applied to the soil. In order to compare the effects of the treatment, data were recorded on the vegetative growth (number and length of the shoots). Furthermore, the levels of gibberellins in the apical area of the shoots of 'Tommy Atkins' were quantified, from the beginning of the experiment until the beginning of floral induction. The results showed that sprayings with prohexadione-Ca, trinexapac-ethyl and chlormequat chloride in a dosage of 1.5 g a.i. plant-1 plant was as efficient as a dose of 4.0 g a.i. plant-1 of paclobutrazol applied to the soil, regarding the regulation of vegetative growth of 'Tommy Atkins'. © ISHS 2013.

Effects of plant cover on the macrofauna of Spartina marshes in northern Brazil

Dados sobre a densidade e diversidade da macrofauna em relação à altura e densidade de Spartina brasiliensis foram obtidos em bancos de marismas em um estuário tropical no norte do Brasil. A amostragem foi realizada quatro vezes durante um ano, nas estações chuvosa, seca e nos períodos de transição entre estas. A amostragem foi realizada em marismas de três classes de tamanho: pequeno, médio e grande. As variáveis foram analisadas em relação às estações do ano e das classes de tamanho das marismas. Um total de 46 táxons foram encontrados, com os poliquetos, isopodos e o gastropódo Neritina virginea dominando a fauna, resultados similares a estudos realizados em marismas no sul do Brasil. A densidade e a diversidade da macrofauna foram correlacionadas positivamente com a densidade de colmos da vegetação, indicando um possível papel da vegetação em proteção contra predação. Todas as três variáveis foram maiores durante os períodos transicionais entre as estações chuvosa e seca e mudanças sazonais em precipitação, salinidade e disponibilidade de luz possam influenciar mortalidade, disponibilidade de alimento e assentamento da macrofauna. Não houve um efeito de tamanho da marisma sobre a macrofauna ou a vegetação. O efeito beneficial da vegetação sobre a macrofauna é apoiado por outros estudos de marismas brasileiras.

Novel anthraquinone derivatives produced by Pestalotiopsis guepinii, an endophytic of the medicinal plant Virola michelii (Myristicaceae)

Um novo derivado de antraquinona, denominado guepinone (1), juntamente com as conhecidas substâncias isossulocrina (2) e cloroissosulocrina (3) foram isolados de uma cultura em arroz de Pestalotiopsis guepinii, um fungo endofitico de Virola michelii. Os compostos foram identificados pela análise de seus dados espectrométricos de RMN 1D e 2D e EM. A atividade antimicrobiana dos compostos isolados foi avaliada e a cloroisossulcrina (3) foi a mais ativa.

The plant ionome revisited by the nutrient balance concept

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Comprehensive two-dimensional gas chromatography combined to multivariate data analysis for detection of disease-resistant clones of Eucalyptus

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Aquatic plant community in porto primavera reservoir

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The evolution of phylogeographic data sets

Empirical phylogeographic studies have progressively sampled greater numbers of loci over time, in part motivated by theoretical papers showing that estimates of key demographic parameters improve as the number of loci increases. Recently, next-generation sequencing has been applied to questions about organismal history, with the promise of revolutionizing the field. However, no systematic assessment of how phylogeographic data sets have changed over time with respect to overall size and information content has been performed. Here, we quantify the changing nature of these genetic data sets over the past 20years, focusing on papers published in Molecular Ecology. We found that the number of independent loci, the total number of alleles sampled and the total number of single nucleotide polymorphisms (SNPs) per data set has improved over time, with particularly dramatic increases within the past 5years. Interestingly, uniparentally inherited organellar markers (e.g. animal mitochondrial and plant chloroplast DNA) continue to represent an important component of phylogeographic data. Single-species studies (cf. comparative studies) that focus on vertebrates (particularly fish and to some extent, birds) represent the gold standard of phylogeographic data collection. Based on the current trajectory seen in our survey data, forecast modelling indicates that the median number of SNPs per data set for studies published by the end of the year 2016 may approach similar to 20000. This survey provides baseline information for understanding the evolution of phylogeographic data sets and underscores the fact that development of analytical methods for handling very large genetic data sets will be critical for facilitating growth of the field.

Worldwide evidence of a unimodal relationship between productivity and plant species richness

The search for predictions of species diversity across environmental gradients has challenged ecologists for decades. The humped-back model (HBM) suggests that plant diversity peaks at intermediate productivity; at low productivity few species can tolerate the environmental stresses, and at high productivity a few highly competitive species dominate. Over time the HBM has become increasingly controversial, and recent studies claim to have refuted it. Here, by using data from coordinated surveys conducted throughout grasslands worldwide and comprising a wide range of site productivities, we provide evidence in support of the HBM pattern at both global and regional extents. The relationships described here provide a foundation for further research into the local, landscape, and historical factors that maintain biodiversity.

The genome sequence of the plant pathogen Xylella fastidiosa: The Xylella fastidiosa consortium of the organization for nucleotide sequencing and analysis, Sao Paulo, Brazil

Xylella fastidiosa is a fastidious, xylem-limited bacterium that causes a range of economically important plant diseases. Here we report the complete genome sequence of X. fastidiosa clone 9a5c, which causes citrus variegated chlorosis - a serious disease of orange trees. The genome comprises a 52.7% GC-rich 2,679,305-base-pair (bp) circular chromosome and 'two plasmids of 51,158 bp and 1,285 bp. We can assign putative functions to47% of the 2,904 predicted coding regions. Efficient metabolic functions are predicted, with sugars as the principal energy and carbon source, supporting existence in the nutrient-poor xylem sap. The mechanisms associated with pathogenicity and virulence involve toxins, antibiotics and ion sequestration systems, as well as bacterium-bacterium and bacterium-host interactions mediated by a range of proteins. Orthologues of some of these proteins have only been identified in animal and human pathogens; their presence in X. fastidiosa indicates that the molecular basis for bacterial pathogenicity is both conserved and independent of host. At least 83 genes are bacteriophage-derived and include virulence-associated genes from other bacteria, providing direct evidence of phage-mediated horizontal gene transfer.

Phenolic compounds influence seed dormancy of palicourea rigida h.b.k. (rubiaceae), a medicinal plant of the brazilian savannah

Palicourea rigida H.B.K. (Rubiaceae), a medicinal species commonly known as douradinha, has wide distribution across ecosystems in Central and South America. This species exhibits seed dormancy delaying germination until optimal conditions for seedling growth and development are in place. While dormancy ensures species survival, it also presents a technical problem for developing P. rigida’s plant production program. Thus, the objective of this study was to investigate if secondary metabolites present in seeds influence the seed dormancy of P. rigida. Mature fruits were harvested from the native habitat, in the savanna region of the State of Minas Gerais during February 2009, 2010 and 2011. The content of phenolic compounds in the seed of P. rigida was measured, and the allelopathic effects were assessed using the germination of lettuces as model to detect phytotoxicity. The P. rigida seeds geminated at rates varying between 7% and 31% with a Seed Germination Index (SGI) of 0.09. Data suggest that the phenolic compounds present in the seeds may be responsible for seed dormancy.

Gerenciamento de Big Data em plantas industriais

Nowadays the companies generate great amount of data from different sources, however some of them produce more data than they can analyze. Big Data is a set of data that grows very fast, collected several times during a short period of time. This work focus on the importance of the correct management of Big Data in an industrial plant. Through a case study based on a company that belongs to the pulp and paper area, the problems resolutions are going to be presented with the usage of appropriate data management. In the final chapters, the results achieved by the company are discussed, showing how the correct choice of data to be monitored and analyzed brought benefits to the company, also best practices will be recommended for the Big Data management