Engineering of Vis-NIR Metamaterials towards Revolutionary Ultrasensitive and Versatile Plasmonic Biosensors

By enabling subwavelength light localization and strong electromagnetic field enhancement, plasmonic biosensors have opened up a new realm of possibilities for a broad range of chemical and biological sensing applications owing to their label-free and real-time attributes. Although significant progress has been made, many fundamental and practical challenges still remain to be addressed. For instance, the plasmonic biosensors are nonselective sensing platforms; they are not well-suited to provide information regarding conformation or chemical fingerprint of unknown biomolecules. Furthermore, tunability of the plasmonic resonance in visible frequency regime is still limited; this will prevent their efficient and reproducible exploitation in single-molecule sensitivity. Here, we show that by engineering geometry of plasmonic metamaterials,1 consisting of periodic arrays of artificial split-ring resonators (SRRs), the plasmonic resonance of metamaterials could be tuned to visible-near infrared regimes (Vis-NIR) such that it allows parallel acquisition of optical transmission and highly surface-enhanced Raman (SERS) spectra from large functionalized SRR arrays. The Au SRRs were designed in form of alphabet letters (U, V, S, H, Y) with various line width (from 80 to 30 nm). By tailoring their size and shape, plasmonic resonance wavelength of the SRRs could be actively tuned so that it gives the strongest SERS effect under given excitation energy and polarization for biological and organic molecules. On the other hand, the plasmonic tunability was also achieved for a given SRR pattern by tuning the laser wavelength to obtain the highest electromagnetic field enhancement. The geometry- and laser-tunable channels typically provide an electromagnetic field enhancement as high as 20 times. This will provide the basis of versatile and multichannel devices for identification of different conformational states of Guanine-rich DNA, detection of a cancer biomarker nucleolin, and femtomolar sensitivity detection of food and drink additives. These results show that the tunable Vis-IR metamaterials are very versatile biosensing platforms and suggest considerable promise in genomic research, disease diagnosis, and food safety analysis.

A New Irish? Problems of communication in modern Irish media and new speakers.

While the Gaeltacht (Irish speaking) areas of Ireland are geographically isolated from each other and relatively small in area, it is expected that the number of second language Irish speakers throughout the country should ensure the future of the language. Nevertheless, while the official standard grammar has been established for many decades, there is still a tendency in the spoken language to give precedence to regional dialectal variants in schools and the broadcast media which often raises barriers between native speakers themselves and between learners and native speakers.
All pupils in school in the Republic and many in Northern Ireland learn Irish and there has been a great increase in the number of pupils attending immersion Irish language Gaelscoileanna. But concern has been expressed about the phonetic and structural accuracy achieved in schools, all of which contributes to communication breakdown.
This paper discusses how a greater awareness of the link between phoneme and grapheme in Irish and the proposals for the Lárchanúint (Central Dialect) in the 1980s and current discussions on Caighdeán Leathan agus Caighdeán Cúng (Broad and Narrow Standard) would mitigate these concerns.

Molecular Medicine and Molecular Pathology for Haematologists:I. Gene Speak made Easy: An Overview of Genes and Gene Expression

Molecular Medicine and Molecular Pathology are integral parts of Haematology as we enter the new millennium. Their origins can be linked to fundamental developments in the basic sciences, particularly genetics, chemistry and biochemistry. The structure of DNA and the genetic code that it encrypts are the critical starting points to our understanding of these new disciplines. The genetic alphabet is a simple one, consisting of just 4 letters, buts its influence is crucial to human development and differentiation. The concept of a gene is not a new one but the Human Genome Project (a joint world-wide effort to characterise our entire genetic make-up) is providing an invaluable understanding of how genes function in normal cellular processes and pinpointing how disruption of these processes can lead to disease. Transcription and translation are the key events by which our genotype is converted to our phenotype (via a messenger RNA intermediate), producing the myriad proteins and enzymes which populate the cellular factory of our body. Unlike the bacterial or prokaryotic genome, the human genome contains a large amount of non coding DNA (less than 1% of our genome codes for proteins), and our genes are interrupted, with the coding regions or exons separated by non coding introns. Precise removal of the intronic material after transcription (though a process called splicing) is critical for efficient translation to occur. Incorrect splicing can lead to the generation of mutant proteins, which can have a dilaterious effect on the phenotype of the individual. Thus the 100,000-200,000 genes which are present in each cell in our body have a defined control mechanism permitting efficient and appropriate expression of proteins and enzymes and yet a single base change in just one of those genes can lead to diseases such as haemophilia or fanconis anaemia.

Alterações fonológicas em crianças com perturbação de linguagem

O presente trabalho propõe-se analisar as características fonológicas de 14 crianças com perturbação de linguagem (PL) e comparar com 14 crianças que apresentam desenvolvimento linguístico normal (estudo 1). As crianças com PL foram divididas em dois sub-grupos: as crianças com PL com quociente de inteligência não verbal (QINV) normal e as crianças com PL com QINV baixo. O estudo 2 visa analisar a eficácia de duas abordagens de intervenção (articulatória e fonológica) no grupo das 14 crianças com PL, usando um estudo experimental controlado randomizado. As medidas de resultados incluem indicadores de severidade (e.g., percentagem de consoantes correctas; percentagem de ocorrência de processos fonológicos; inventário fonético) e de inteligibilidade (palavras isoladas e fala encadeada). O trabalho pretende ainda analisar a resposta ao tratamento das crianças tendo em conta o seu nível de QINV. Foi também desenvolvido um questionário para obter as opiniões dos pais (análise qualitativa) sobre as abordagens de intervenção implementadas. Os resultados obtidos no estudo 1 indicam que as crianças com PL apresentam dificuldades graves a nível do desenvolvimento fonológico. Estas dificuldades evidenciaram-se pela percentagem reduzida de consoantes correctas e pela elevada frequência de utilização de processos fonológicos típicos nas crianças com PL quando comparadas com as crianças com desenvolvimento da linguagem normal. Verificou-se que as crianças com PL também apresentaram processos fonológicos que não são frequentes no desenvolvimento fonológico normal. Neste estudo verificou-se ainda que as crianças com QINV baixo e as crianças com QINV normal não apresentaram uma performance significativamente diferente nas medidas analisadas. Os resultados do estudo da análise da eficácia das abordagens de intervenção indicam que as duas abordagens foram eficazes na melhoria da produção das crianças. Os resultados mostraram uma diferença significativa no grupo tratado com a abordagem fonológica (AF) (p = 0.018) e no grupo tratado com a abordagem articulatória (AA) (p = 0.018) relativamente à diferença entre a PCC obtida antes e depois da intervenção terapêutica. Verificou-se também uma diferença significativa (p = 0.015) entre os dois grupos de intervenção o que sugere que o grupo das crianças tratadas com a AF apresentou uma evolução significativamente maior a nível da PCC comparativamente ao grupo das crianças tratadas com a AA. Os resultados obtidos neste estudo mostraram também que as diferenças a nível do QINV não influenciaram a resposta ao tratamento. Todos os pais consideraram que a intervenção contribuiu para a evolução das crianças, e que a terapia os ajudou a compreender melhor os seus filhos. Relativamente às experiências de inteligibilidade, os resultados foram obtidos através de um conjunto de ouvintes, entre os quais se verificou uma elevada concordância. Os resultados destas experiências mostraram que a AF foi eficaz na melhoria da inteligibilidade das palavras e da fala encadeada das crianças, ao contrário da AA.

L’évolution de la production des voyelles du français chez des immigrants adultes hispanophones : une étude de cas

Cette recherche s’inscrit dans le domaine des études visant à documenter le processus d’apprentissage du système phonologique de la langue du pays d’accueil chez des apprenants hispanophones du français en situation d’immigration. Nous avons effectué une étude de cas à l’aide d’enregistrements recueillis à quatre reprises pour documenter l’appropriation de sept nouvelles voyelles françaises à l’intérieur de paires minimales courantes comme vu et vous. Nous avons observé une réorganisation importante de l’inventaire des voyelles suscitée par le passage de l’espagnol au français : création d’une nouvelle catégorie phonétique pour les voyelles antérieures arrondies et distinction des nouveaux contrastes [e/ɛ], [o/ɔ] et [a/ɑ]. Par ailleurs, nous avons noté une amélioration marquée des contrastes vocaliques chez l’un des quatre participants, et une légère amélioration chez les trois autres.

Specifying and analysing networks of processes in CSPt (or in search of associativity)

In proposing theories of how we should design and specify networks of processes it is necessary to show that the semantics of any language we use to write down the intended behaviours of a system has several qualities. First in that the meaning of what is written on the page reflects the intention of the designer; second that there are no unexpected behaviours that might arise in a specified system that are hidden from the unsuspecting specifier; and third that the intention for the design of the behaviour of a network of processes can be communicated clearly and intuitively to others. In order to achieve this we have developed a variant of CSP, called CSPt, designed to solve the problems of termination of parallel processes present in the original formulation of CSP. In CSPt we introduced three parallel operators, each with a different kind of termination semantics, which we call synchronous, asynchronous and race. These operators provide specifiers with an expressive and flexible tool kit to define the intended behaviour of a system in such a way that unexpected or unwanted behaviours are guaranteed not to take place. In this paper we extend out analysis of CSPt and introduce the notion of an alphabet diagram that illustrates the different categories of events that can arise in the parallel composition of processes. These alphabet diagrams are then used to analyse networks of three processes in parallel with the aim of identifying sufficient constraints to ensure associativity of their parallel composition. Having achieved this we then proceed to prove associativity laws for the three parallel operators of CSPt. Next, we illustrate how to design and construct a network of three processes that satisfy the associativity law, using the associativity theorem and alphabet diagrams. Finally, we outline how this could be achieved for more general networks of processes.

Successful termination in timed CSP

In proposing theories of how we should design and specify networks of processes it is necessary to show that the semantics of any language we use to write down the intended behaviours of a system has several qualities. First in that the meaning of what is written on the page reflects the intention of the designer; second that there are no unexpected behaviours that might arise in a specified system that are hidden from the unsuspecting specifier; and third that the intention for the design of the behaviour of a network of processes can be communicated clearly and intuitively to others. In order to achieve this we have developed a variant of CSP, called CSPt, designed to solve the problems of termination of parallel processes present in the original formulation of CSP. In CSPt we introduced three parallel operators, each with a different kind of termination semantics, which we call synchronous, asynchronous and race. These operators provide specifiers with an expressive and flexible tool kit to define the intended behaviour of a system in such a way that unexpected or unwanted behaviours are guaranteed not to take place. In this paper we extend out analysis of CSPt and introduce the notion of an alphabet diagram that illustrates the different categories of events that can arise in the parallel composition of processes. These alphabet diagrams are then used to analyse networks of three processes in parallel with the aim of identifying sufficient constraints to ensure associativity of their parallel composition. Having achieved this we then proceed to prove associativity laws for the three parallel operators of CSPt. Next, we illustrate how to design and construct a network of three processes that satisfy the associativity law, using the associativity theorem and alphabet diagrams. Finally, we outline how this could be achieved for more general networks of processes.

Fractional dynamics in DNA

This paper addresses the DNA code analysis in the perspective of dynamics and fractional calculus. Several mathematical tools are selected to establish a quantitative method without distorting the alphabet represented by the sequence of DNA bases. The association of Gray code, Fourier transform and fractional calculus leads to a categorical representation of species and chromosomes.

Analysis and visualization of chromosome information

This paper analyzes the DNA code of several species in the perspective of information content. For that purpose several concepts and mathematical tools are selected towards establishing a quantitative method without a priori distorting the alphabet represented by the sequence of DNA bases. The synergies of associating Gray code, histogram characterization and multidimensional scaling visualization lead to a collection of plots with a categorical representation of species and chromosomes.

The rebirth of an old language: issues of gender equality in Kazakhsstan

The existing language situation in Kazakhstan, while peaceful, is not without some tension. We propose to analyze here some questions we consider relevant in the frame of cultural globalization and gender equality, such as: free from Russian imperialism, could Kazakhstan become an easy prey of Turkey’s “imperialist dream”? Could these traditionally Muslim people be soon facing the end of religious tolerance and gender equality, becoming this new old language an easy instrument for the infiltration in the country of fundamentalism (it has already crossed the boarders of Uzbekistan), leading to a gradual deterioration of its rich multicultural relations? The present structure of the language is still very fragile: there are three main dialects and many academics defend the re-introduction of the Latin alphabet, thus enlarging the possibility of cultural “contamination” by making the transmission of fundamentalist ideas still easier through neighbour countries like Azerbaijan, Uzbekistan and Turkmenistan (their languages belong to the same sub-group of Common Turkic), where the Latin alphabet is already in use, and where the ground for such ideas shown itself very fruitful.