A molecular genetic investigation of the population structure of Atlantic menhaden (Brevoortia tyrannus)

Atlantic menhaden (Brevoortia tyrannus), through landings, support one of the largest commercial fisheries in the United States. Recent consolidation of the once coast-wide reduction fishery to waters within and around Chesapeake Bay has raised concerns over the possibility of the loss of unique genetic variation resulting from concentrated fishing pressure. To address this question, we surveyed variation at the mitochondrial cytochrome c oxidase subunit I (COI) gene region and seven nuclear microsatellite loci to evaluate stock structure of Atlantic menhaden. Samples were collected from up to three cohorts of Atlantic menhaden at four geographic locations along the U.S. Atlantic coast in 2006 and 2007, and from the closely related Gulf menhaden (B. patronus) in the Gulf of Mexico. Genetic divergence between Atlantic menhaden and Gulf menhaden, based on the COI gene region sequences and microsatellite loci, was more characteristic of conspecific populations than separate species. Hierarchical analyses of molecular variance indicated a homogeneous distribution of genetic variation within Atlantic menhaden. No significant variation was found between young-of-the-year menhaden (YOY) collected early and late in the season within Chesapeake Bay, between young-of-the-year and yearling menhaden collected in the Chesapeake Bay during the same year, between YOY and yearling menhaden taken in Chesapeake Bay in successive years, or among combined YOY and yearling Atlantic menhaden collected in both years from the four geographic locations. The genetic connectivity between the regional collections indicates that the concentration of fishing pressure in and around Chesapeake Bay will not result in a significant loss of unique genetic variation.

Heterogeneous catalytic properties of unprecedented m-O-[FeTCPP]2 dimers (H2TCPP = meso-tetra(4-carboxyphenyl)porphyrin): unusual superhyperfine EPR structure

Articulo científico Dalton Transactions

Structure-function analysis of USP1: insights into the role of Ser313 phosphorylation site and the effect of cancer-associated mutations on autocleavage

Background: In complex with its cofactor UAF1, the USP1 deubiquitinase plays an important role in cellular processes related to cancer, including the response to DNA damage. The USP1/UAF1 complex is emerging as a novel target in cancer therapy, but several aspects of its function and regulation remain to be further clarified. These include the role of the serine 313 phosphorylation site, the relative contribution of different USP1 sequence motifs to UAF1 binding, and the potential effect of cancer-associated mutations on USP1 regulation by autocleavage. Methods: We have generated a large set of USP1 structural variants, including a catalytically inactive form (C90S), non-phosphorylatable (S313A) and phosphomimetic (S313D) mutants, deletion mutants lacking potential UAF1 binding sites, a mutant (GG/AA) unable to undergo autocleavage at the well-characterized G670/G671 diglycine motif, and four USP1 mutants identified in tumor samples that cluster around this cleavage site (G667A, L669P, K673T and A676T). Using cell-based assays, we have determined the ability of these mutants to bind UAF1, to reverse DNA damage-induced monoubiquitination of PCNA, and to undergo autocleavage. Results: A non-phosphorylatable S313A mutant of USP1 retained the ability to bind UAF1 and to reverse PCNA ubiquitination in cell-based assays. Regardless of the presence of a phosphomimetic S313D mutation, deletion of USP1 fragment 420-520 disrupted UAF1 binding, as determined using a nuclear relocation assay. The UAF1 binding site in a second UAF1-interacting DUB, USP46, was mapped to a region homologous to USP1(420-520). Regarding USP1 autocleavage, co-expression of the C90S and GG/AA mutants did not result in cleavage, while the cancer-associated mutation L669P was found to reduce cleavage efficiency. Conclusions: USP1 phosphorylation at S313 is not critical for PCNA deubiquitination, neither for binding to UAF1 in a cellular environment. In this context, USP1 amino acid motif 420-520 is necessary and sufficient for UAF1 binding. This motif, and a homologous amino acid segment that mediates USP46 binding to UAF1, map to the Fingers sub-domain of these DUBs. On the other hand, our results support the view that USP1 autocleavage may occur in cis, and can be altered by a cancer-associated mutation.

Ecological factors related to the distribution of Bankia gouldi Bartsch in Chesapeake Bay

Organisms were collected on test panels, six inch lengths of dressed two by four inch pine, suspended in the water in a vertical position as described by Turner (1947). The panels were usually located at some convenient structure such as a dock-piling or sea-wall. Except where otherwise indicated by the data, the samples were collected from each station once a month between May 1950 and May 1953. During the three year period, seven hundred and nineteen panels were submerged in Chesapeake Bay. Approximately 14,000 organisms were encountered on these panels of which 20% or approximately 3,000 organisms could be identified from the dried pallets. Preliminary notes on the extent of fouling were made in the field after which the samples were removed to the laboratory for further study.

Ramp oxide termination structure using high-k dielectrics for high voltage diamond Schottky diodes

The promising theoretical properties of diamond, together with the recent advances in producing high-quality single crystal diamond substrates, have increased the interest in using diamond in power electronic devices. This paper presents numerical and experimental off-state results for a diamond Schottky barrier diode (SBD), one of most studied unipolar devices in diamond. Finding a suitable termination structure is an essential step towards designing a high voltage diamond device. The ramp oxide structure shows very encouraging electronic performance when used to terminate diamond SBDs. High-k dielectrics are also considered in order to further improve the reliability and electrical performance of the structure. © 2007 Elsevier B.V. All rights reserved.

Climate-related long-term faunal changes in a California rocky intertidal community [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): The effects of gradual climate change (ie, multi-decadal) on biological communities are not well understood for most natural systems, owing principally to the lack of quantitative observations in early studies. ... We resurveyed invertebrate species on an intertidal transect in central California, first established and surveyed in 1931, to assess shifts in community structure.

A novel proline rich bombesin-related peptide (PR-bombesin) from toad Bombina maxima

A novel bombesin-related peptide was isolated from skin secretions of Chinese red belly toad Bombina maxima. Its primary structure was established as pGlu-Lys-Lys-Pro-Pro-Arg-Pro-Pro-Gln-Trp-Ala-Val-Gly-His-Phe-Met-NH2. The amino-terminal (N-terminal) 8-residue segment comprising four prolines and three basic residues is extensively different from bombesins from other Bombina species. The peptide was thus named proline rich bombesin (PR-bombesin). PR-bumbesin was found to elicit concentration-dependent contractile effects in the rat stomach strip, with both increased potency and intrinsic activity as compared with those of [Leu(13)]bombesin. Analysis of different bombesin cDNA structures revealed that an 8 to 14- nucleotide fragment replacement in the peptide coding region (TGGGGAAT in the cDNAs of multiple bombesin forms from Bombina orientalis and CACCCCGGCCACCC in the cDNA of PR-bombesin) resulted in an unusual Pro-Pro-Arg-Pro-Pro motif in the N-terminal part of PR-bombesin. (C) 2002 Elsevier Science Inc. All rights reserved.

Microalgal community structure in experimental carp-pangasiid catfish polyculture ponds

Microalgal community structure in experimental carp-pangasiid catfish polyculture ponds under four different stocking rates (treatments) each with three replications in the Field Laboratory of the Faculty Fisheries, Bangladesh Agricultural University, Mymensingh was studied. A total of 38 microalgal genera were identified under four major groups: 18 genera belong to Chlorophyceae, 9 to Cyanophyceae, 8 to Bacillariophyceae and 3 to Euglenophyceae. Chlorophyceae was abundant in all treatments followed by Cyanophyceae, Bacillariophyceae and Euglenophyceae throughout the study period. The cell densities of total microalgal population varied between 51.66x10^3 cells/L in June in T1 and 126.4x10^3 cells/L in August in T2. The appearance of Microcysris, Oscillatoria, Gomphospheria, Hildenbrandia, Chlorella, Scenedesmus, Cyclotella, Navicula, Nitzschia, Euglena and Phacus as dominant genera throughout the study period may related to sufficient nutrient availability, good light conditions and high growth rate of these genera. Water quality parameters of the experimental ponds were within suitable range for microalgal production and fish culture though the nutrient (nitrate-nitrogen and phosphate-phosphorus) concentrations were high. The factors involved in structuring a phytoplankton community arise from the relationship generated by physical, chemical and biological conditions especially the stocked planktivorous carps. Microalgal bloom formation is very common in pangasiid catfish monoculture ponds but in the present study bloom was not formed and the algal species diversity was found to be slightly increased with the study period. The introduction carps of carps in the experimental ponds might have helped in controlling the microalgal bloom formation and maintenance of the species diversity.

Differential population structuring and demographic history of two closely related fish species, Japanese sea bass (Lateolabrax japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific

The Quaternary cold periods in the Northwestern Pacific are thought to have heavily influenced the amount and distribution of intraspecific genetic variation in marine fishes. To estimate the demographic history and genetic structure of Lateolabrax macula

Some major unsolved aspects of the dynamics of African fisheries as related to questions of rational development and management

Studies of fish and fisheries in Africa fall in to four phases: the period of fisheries expeditions, ecological investigations, the development phase, and the period of mechanized exploitation. There is need to establish the taxonomic status and ecology of the varied components of the potentially important Haplochromis in Lake Victoria. A comprehensive study of their bionomics and life history, population structure, natality, recruitment and mortality coefficients should be undertaken. Emphasis lo be laid on the study of the ecology, especially breeding behaviour of the economically important c1upeids (Stolothrissa tanganciae and Limnothrissa miodon), in Lake Tanganyika. A comprehensive investigation into the migratory and shoaling behaviour of the Lake Victoria Tilapia to be initiated. Pre-impoundment studies to be undertaken to assess effects of hydroelectric projects of fisheries. Studies on parasites of economically important fishes to be stepped up to assess pathological effects and the biological basis for their control. The role of predators, e.g., Hydrocyon, Lates and Micropterus salmoides in commercial fish populations should be evaluated, and the knowledge gaincd used to effectively manage the fisheries in favour of the more desirable fish stocks.

Turbulent flow structure in experimental laboratory wind-generated gravity waves

This paper is the third part of a report on systematic measurements and analyses of wind-generated water waves in a laboratory environment. The results of the measurements of the turbulent flow on the water side are presented here, the details of which include the turbulence structure, the correlation functions, and the length and velocity scales. It shows that the mean turbulent velocity profiles are logarithmic, and the flows are hydraulically rough. The friction velocity in the water boundary layer is an order of magnitude smaller than that in the wind boundary layer. The level of turbulence is enhanced immediately beneath the water surface due to micro-breaking, which reflects that the Reynolds shear stress is of the order u *w 2. The vertical velocities of the turbulence are related to the relevant velocity scale at the still-water level. The autocorrelation function in the vertical direction shows features of typical anisotropic turbulence comprising a large range of wavelengths. The ratio between the microscale and macroscale can be expressed as λ/Λ=a Re Λ n, with the exponent n slightly different from -1/2, which is the value when turbulence production and dissipation are in balance. On the basis of the wavelength and turbulent velocity, the free-surface flows in the present experiments fall into the wavy free-surface flow regime. The integral turbulent scale on the water side alone underestimates the degree of disturbance at the free surface. © 2012 Elsevier B.V.