Trends in counts of manatees Trichechus manatus latirostris from 1987 to 2006 in waters of Sarasota County, Florida, USA

To demonstrate the utility of distributional surveys for assessing relative abundance and trends in counts for a discrete area of coastline, aerial survey data from Sarasota County, Florida, USA, were analyzed for the years 1987 to 2006. The study area was divided into 3 regions: the Sarasota Bay Region (SBR; N = 353 surveys), Lemon Bay (N = 368), and the Myakka River (N = 209). Manatee counts varied significantly across seasons (p < 0.0001) for all 3 regions. Manatees within Sarasota County utilized open bays primarily in the warmer months. Such usage may have been influenced by resource availability. Conversely, usage of the Myakka River peaked in winter months when manatees seek warm-water refugia such as Warm Mineral Spring. Marginal means for yearly counts within Lemon Bay and the SBR increased significantly, beginning midway through the survey period (1996) until the early 2000s. In contrast, mean yearly counts within the Myakka River decreased over this time period. After record lows in 2003 for Lemon Bay and the Myakka River, and a considerable decline in 2004 for the SBR, mean yearly counts for all 3 regions showed an increasing trend over the remaining 2 yr of the study. Greater protection of manatee habitat and availability of forage coincided with the increase in numbers of manatees using Sarasota County waters during the 1990s, and the subsequent decline in numbers may be indicative of the increase in mortality in recent years due to watercraft collisions and severe red tide events.

Shallow-water benthic habitats of St. John, U.S. Virgin Islands

Coral reef ecosystems of the Virgin Islands Coral Reef National Monument, Virgin Islands National Park and the surrounding waters of St. John, U.S. Virgin Islands are a precious natural resource worthy of special protection and conservation. The mosaic of habitats including coral reefs, seagrasses and mangroves, are home to a diversity of marine organisms. These benthic habitats and their associated inhabitants provide many important ecosystem services to the community of St. John, such as fishing, tourism and shoreline protection. However, coral reef ecosystems throughout the U.S. Caribbean are under increasing pressure from environmental and anthropogenic stressors that threaten to destroy the natural heritage of these marine habitats. Mapping of benthic habitats is an integral component of any effective ecosystem-based management approach. Through the implementation of a multi-year interagency agreement, NOAA’s Center for Coastal Monitoring and Assessment - Biogeography Branch and the U.S. National Park Service (NPS) have completed benthic habitat mapping, field validation and accuracy assessment of maps for the nearshore marine environment of St. John. This work is an expansion of ongoing mapping and monitoring efforts conducted by NOAA and NPS in the U.S. Caribbean and replaces previous NOAA maps generated by Kendall et al. (2001) for the waters around St. John. The use of standardized protocols enables the condition of the coral reef ecosystems around St. John to be evaluated in context to the rest of the Virgin Island Territories and other U.S. coral ecosystems. The products from this effort provide an accurate assessment of the abundance and distribution of marine habitats surrounding St. John to support more effective management and conservation of ocean resources within the National Park system. This report documents the entire process of benthic habitat mapping in St. John. Chapter 1 provides a description of the benthic habitat classification scheme used to categorize the different habitats existing in the nearshore environment. Chapter 2 describes the steps required to create a benthic habitat map from visual interpretation of remotely sensed imagery. Chapter 3 details the process of accuracy assessment and reports on the thematic accuracy of the final maps. Finally, Chapter 4 is a summary of the basic map content and compares the new maps to a previous NOAA effort. Benthic habitat maps of the nearshore marine environment of St. John, U.S. Virgin Islands were created by visual interpretation of remotely sensed imagery. Overhead imagery, including color orthophotography and IKONOS satellite imagery, proved to be an excellent source from which to visually interpret the location, extent and attributes of marine habitats. NOAA scientists were able to accurately and reliably delineate the boundaries of features on digital imagery using a Geographic Information System (GIS) and fi eld investigations. The St. John habitat classification scheme defined benthic communities on the basis of four primary coral reef ecosystem attributes: 1) broad geographic zone, 2) geomorphological structure type, 3) dominant biological cover, and 4) degree of live coral cover. Every feature in the benthic habitat map was assigned a designation at each level of the scheme. The ability to apply any component of this scheme was dependent on being able to identify and delineate a given feature in remotely sensed imagery.

Moderate-depth benthic habitats of St. John, U.S. Virgin Islands

The National Oceanic and Atmospheric Administration’s (NOAA) Center for Coastal Monitoring and Assessment’s (CCMA) Biogeography Branch and the U.S. National Park Service (NPS) have completed mapping the moderate-depth marine environment south of St. John. This work is an expansion of ongoing mapping and monitoring efforts conducted by NOAA and NPS in the U.S. Caribbean. The standardized protocols used in this effort will enable scientists and managers to quantitatively compare moderate-depth coral reef ecosystems around St. John to those throughout the U.S. Territories. These protocols and products will also help support the effective management and conservation of the marine resources within the National Park system.

St. John, USVI mission report, NOAA/NOS/NCCOS/CCMA/Biogeography Branch, July 6 - July 17, 2009

The intent of this field mission was to continue ongoing efforts: (1) to spatially characterize and monitor the distribution, abundance and size of reef fishes, and the abundance of macroinvertebrates (conch, Diatema, lobster) within and around the waters of the Virgin Islands National Park (VIIS) and newly established Virgin Islands Coral Reef National Monument (VICR), (2) to correlate this information to in-situ data collected on associated habitat parameters, (3) to use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting and (4) to establish the efficacy of those management decisions. An additional focus this year, was to evaluate a new habitat data collection method for RHA sites (MSR and some Coral Bay sites). There are concerns that the cylinder habitat data are not reflective of the fish transect habitat. To address this, we collected habitat data at 5x4 m increments along the transect in addition to data collected using the cylinder method. We are currently assessing the potential differences between these methods and preliminary results indicate that the average difference of coral cover estimates between the two methods was 4.1% (range 0-11%) based on 16 sample sites. In addition, Erinn Muller, a Nancy Foster Fellowship recipient, collaborated with the Biogeography Branch to examine the spatial distribution of coral diseases, to provide baseline information on disease prevalence over varying spatial scales and to establish spatial distributions of coral diseases around St. John.

Temporal trends in reef fish assemblages inside Virgin Islands National Park and around St. John, U.S. Virgin Islands, 1988-2006

This report is a result of long-term fish monitoring studies supported by the National Park Service (NPS) at the Virgin Islands National Park since 1988 and is now a joint NPS and NOAA collaboration. Reef fish monitoring data collected from 1988 to 2006 within Virgin Islands National Park (VINP) and adjacent reefs around St. John, U.S. Virgin Islands (USVI) were analyzed to provide information on the status of reef fishes during the monitoring period. Monitoring projects were initiated by the National Park Service (NPS) in the 1980s to provide useful data for evaluation of resources and for development of a long-term monitoring program. Monthly monitoring was conducted at two reef sites (Yawzi Point and Cocoloba Cay) starting in November 1988 for 2.5 years to document the monthly/seasonal variability in reef fish assemblages. Hurricane Hugo (a powerful Category 4 storm) struck the USVI in September 1989 resulting in considerable damage to the reefs around St. John. Abundance of fishes was lower at both sites following the storm, however, a greater effect was observed at Yawzi Point, which experienced a more direct impact from the hurricane. The storm affected species differently, with some showing only small, short-term declines in abundance, and others, such as the numerically abundant blue chromis (Chromis cyanea), a planktivorous damselfish, exhibiting a larger and longer recovery period. This report provides: 1) an evaluation of sampling methods, sample size, and methods used during the sampling period, 2) an evaluation of the spatial and temporal variability in reef fish assemblages at selected reef sites inside and outside of VINP, and 3) an evaluation of trends over 17 years of monitoring at the four reference sites. Comparisons of methods were conducted to standardize assessments among years. Several methods were used to evaluate sample size requirements for reef fish monitoring and the results provided a statistically robust justification for sample allocation.

Mission report: a strategy to inventory, characterize, and monitor the marine region within and around the National Park and Monument boundaries of St. John, USVI, July 21- July 31, 2008

The intent of this field mission was to continue ongoing efforts: (1) to spatially characterize and monitor the distribution, abundance and size of both reef fishes and conch within and around the waters of the Virgin Islands National Park (VIIS) and newly established Virgin Islands Coral Reef National Monument (VICR), (2) to correlate this information to in-situ data collected on associated habitat parameters, (3) to use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting and to establish the efficacy of those management decisions. This work is supported by the National Park Service and NOAA’s Coral Reef Conservation Program’s Caribbean Coral Reef Ecosystem Monitoring Project. The report highlights the successes of this mission.

Population dynamics of the ribbon fish, Lepturacanthus savala (Cuvier 1829) from the north-eastern part of the Bay of Bengal

Population parameters of Lepturacanthus savala from the trawl catches in the north-eastern part of the Bay of Bengal, Bangladesh were investigated based on length frequency data, using complete ELEFAN computer program. The asymptotic length (Lα) and growth constant (K) were estimated to be 106.50 cm (total length) and 0.80/year respectively. Based on these growth parameters, the total mortality (Z) was estimated to be 1.89. The estimated values for natural mortality (M) and fishing mortality (F) were 1.08 and 0.81 respectively. The estimated value for the exploitation rate (E) using the length converted catch curve was 0.43. The recruitment pattern showed two peaks per year. The estimated sizes of L. savala at 25, 50 and 75% probabilities of capture were 57.49, 60.39 and 63.28 cm respectively. The estimated length weight relationship for combined sex was W=0.00093 TL(super)2.97

Growth parameters of Lepturacanthus savala (Cuvier, 1829) from Mumbai waters

Lepturacanthus savala (Cuvier, 1829) constitutes a minor fishery contributing 23.3% to the total ribbonfish catch in Maharashtra. Based on the length data obtained from shrimp trawlers and the traditionally operated bag nets, age and growth of the species have been investigated from Mumbai waters. Growth was studied by various computer-based methods incorporated in FiSAT Programme. The growth parameters L∞ and K (on annual basis) by Gulland-Holt plot were 683.3 mm and 0.87, respectively. As the seasonal temperature variations in coastal waters of Mumbai are not pronounced, the seasonally oscillating growth patterns by ELEFAN and Appledoorn's method were not considered. Following the von Bertalanffy growth model, the fish attains 399.8, 567.2 and 637.4 mm at the end of 1, 2 and 3 years, respectively, and the lifespan of the fish is about 3.3 years.

Reproduction, age and growth of the kelee shad, Hilsa kelee (Cuvier, 1829) (pisces: fam. Clupeidae) with informations on its fishery in Maputo Bay, Mozambique

Age, growth and reproduction of H. kelee were studied, and a brief description of its fishery in Maputo Bay (Mozambique) is given. Most material was collected from gill net fisheries during 1977-1980, but some was taken from shrimp trawlers operating in the same area during 1980-1981. Main spawning takes place during October-January with a peak in December. There is also some evidence that spawning takes place during June-July. The size at first maturity was approximately equals 14-15 cm. Ageing was carried out using primary growth rings in the otoliths and length-frequency analysis of fish caught by shrimp trawlers. Von Bertalanffy's growth equation parameters were determined. Males and females grew in similar fashion. There are seasonal trends in the catch composition of the gill net fishery, showing high values during April to September and low during October to December.

Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species

Phylogenetic relationships among 15 species of wood mice (genus Apodemus) were reconstructed to explore some long-standing taxonomic problems. The results provided support for the monophyly of the genus Apodemus, but could not reject the hypothesis of paraphyly for this genus. Our data divided the 15 species into four major groups: (1) the Sylvaemus group (A. sylvaticus, A. flavicollis, A. alpicola, and A. uralensis), (2) the Apodemus group (A. peninsulae, A. chevreri, A. agrarius, A. speciosus, A. draco, A. ilex, A. semotus, A. latronum, and A. mystacinus), (3) A. argenteus, and (4) A. gurkha. Our results also suggested that orestes should be a valid subspecies of A. draco rather than an independent species; in contrast, A. ilex from Yunnan may be regarded as a separate species rather than a synonym of orestes or draco. The species level status of A. latronum, tscherga as synonyms of A. uralensis, and A. chevrieri as a valid species and the closest sibling species of A. agrarius were further corroborated by our data. Applying a molecular clock with the divergences of Mus and Rattus set at 12 million years ago (Mya) as a calibration point, it was estimated that five old lineages (A. mystacinus and four major groups above) diverged in the late Miocene (7.82-12.74 Mya). Then the Apodemus group (excluding A. mystacinus) split into two subgroups: agrarius and draco, at about 7.17-9.95 Mya. Four species of the Sylvaemus group were estimated to diverge at about 2.92-5.21 Mya. The Hengduan Mountains Region was hypothesized to have played important roles in Apodemus evolutionary histories since the Pleistocene. (C) 2004 Elsevier Inc. All rights reserved.

First human-caused extinction of a cetacean species?

The Yangtze River dolphin or baiji ( Lipotes vexillifer), an obligate freshwater odontocete known only from the middle-lower Yangtze River system and neighbouring Qiantang River in eastern China, has long been recognized as one of the world's rarest and most threatened mammal species. The status of the baiji has not been investigated since the late 1990s, when the surviving population was estimated to be as low as 13 individuals. An intensive six-week multivessel visual and acoustic survey carried out in November-December 2006, covering the entire historical range of the baiji in the main Yangtze channel, failed to find any evidence that the species survives. We are forced to conclude that the baiji is now likely to be extinct, probably due to unsustainable by-catch in local fisheries. This represents the first global extinction of a large vertebrate for over 50 years, only the fourth disappearance of an entire mammal family since AD 1500, and the first cetacean species to be driven to extinction by human activity. Immediate and extreme measures may be necessary to prevent the extinction of other endangered cetaceans, including the sympatric Yangtze finless porpoise ( Neophocaena phocaenoides asiaeorientalis).

Influence of annealing on structure of poly(aryl ether ether ketone ketone) revealed by SAXS

Structural studies of poly(aryl ether ether ketone ketone) (PEEKK) using small-angle X-ray scattering and one-dimensional electron density correlation function methods revealed that its aggregated state structure was significantly influenced by the annealing temperature. The long period L, the average thickness of the lamellae d, the electron density difference between the crystalline and amorphous regions eta(c) - eta(a), and the invariant Q increased with increasing annealing temperature, but it was opposite to the case of the specific inner surfaces O-s. A transition zone existed between the traditional "two phases" with a dimension about 0.5 nm for semicrystalline PEEKK. (C) 1998 John Wiley & Sons, Inc. J Appl Polym Sci 69: 1829-1835, 1998.

Cure processing modeling and cure cycle simulation of epoxy-terminated poly(phenylene ether ketone) .3. Determination of the time of pressure application

The curing temperature, pressure, and curing time have significant influence on finished thermosetting composite products. The time of pressure application is one of the most important processing parameters in the manufacture of a thermosetting composite. The determination of the time of pressure application relies on analysis of the viscosity variation of the polymer, associated with curing temperature and curing time. To determine it, the influence of the time of pressure application on the physical properties of epoxy-terminated poly(phenylene ether ketone) (E-PEK)-based continuous carbon fiber composite was studied. It was found that a stepwise temperature cure cycle is more suitable for manufacture of this composite. There are two viscosity valleys, in the case of the E-PEK system, associated with temperature during a stepwise cure cycle. The analysis on the effects of reinforcement fraction and defect content on the composite sheet quality indicates that the width-adjustable second viscosity valley provides a suitable pressing window. The viscosity, ranging from 400 to 1200 Pa . s at the second viscosity valley, is the optimal viscosity range for applying pressure to ensure appropriate resin flow during curing process, which enables one to get a finished composite with optimal fiber volume fraction and low void content. (C) 1997 John Wiley & Sons, Inc.

虾夷扇贝Patinopecten yessoensis (Jay)和仿刺参Apostichopus japonicus (Seienka)多倍体诱导研究

本文采用化学方法诱导了虾夷扇贝Patinopecten yessoensis (Jay)和仿刺参Apostichopus japonicus (Selenka)的多倍体。采用6－二甲基氨基嘌呤（6－dimethylaminopurine）抑制虾夷扇贝极体释放，研究了诱导三倍体的实验条件、技术工艺以及三倍体虾夷扇贝幼虫的生长和培育方法。结果表明，使用6－二甲基氨基嘌呤（6－DMAP）可诱导17.3%-100.0%的三倍体虾夷扇贝面盘幼虫。筛选并优化了生产中操作简便、高效、成活率高的诱导条件，并研究出在扇贝三倍体诱导中批量获得受精卵、处理及培育的技术工艺，对扇贝三倍体的规模化诱导及培育等生产性应用具有较高的参考价值。报道了采用细胞松弛素B（cytochalasin B）、秋水仙素（colchicine）、6－DMAP以及咖啡因（coffeine）等药物抑制虾夷扇贝第一极体（PB_1）释放、PB_1和第二极体（PB_2）释放以及抑制第一次卵裂等方法诱导四倍体的结果。结果表明，CB、6－DMAP和秋水仙素抑制扇贝第一次有丝分裂诱发四倍体的比例低于25%，而采用CB抑制PB_1可有效地诱导产生四倍体，从授精后42min提前到15-22min开始处理，抑制PB_1的放出有助于提高四倍体的比例，在12 ℃，处理开始和终上时间分别在授精后20－22min和60－62min时，面盘幼虫四倍体率最高，为56.5%。对CB处理抑制受精卵PB_1释放的处理组胚胎的染色体分离状况进行了观察研究。对照组受精卵具有19条四分体染色体，经过减数分裂I期（meiosis I）和减数分裂II期（meiosis II），放出PB_1和PB_2，受精卵的发育具有不同步性。处理组受精卵在第二次减数分裂中出现了“三级分离“、“联合二级分离“和“独立二级分离“等特殊的分离类型，初步分析了CB抑制第一极体放出的机理。对三倍体虾夷扇贝的繁殖潜力和卵子的大小进行了观察研究，三倍体扇贝具一定的繁殖能力，三倍体雌贝平均产卵3.26 * 10~6个，而相同壳长二倍体贝为1.45 * 10~7，三倍体产卵量仅为二倍体产卵量的22.5%。三倍体卵子产出后，形状不规则，卵子平均直径为87.25μm，比二倍体大11.7%，卵子体积比二倍体大39.4%。利用CB抑制第一极体释放诱导了虾夷扇贝的四倍体，诱导率为41.5%。首次报道了仿刺参Apostichopus japanicus (Selenka)多倍体诱导的结果。采用紫外线照射的海水成功地使海参分别单独产卵、排精，从而准确地控制了海参的人工授精后处理的时间。采用0.2、0.4mg/L CB 抑制受精卵第一极体释放以及10、20、30和40mg/L 的6－DMAP 分别抑制PB_1、PB_2放出的方法诱导了仿刺参的多倍体。研究了诱导的药物浓度、处理时间以及处理开始时间等，同时对幼体的成活率等进行了探讨。结果表明，2种药物均可诱导仿刺参产生三倍体和四倍体，从效果上看，采用CB抑制PB_1诱导，到达小耳幼体时，可产生9.7%-21.3%的四倍体。6－DMAP抑制PB_2放出诱导三倍体，三倍体诱导率介于7.5%-25.8%之间。