Description and chemical composition of manganese nodules collected during Hakuho Maru Cruise KH-72-2, Oct-Dec, 1972 in the Southwest Japan Arc and Ryukyu Arc areas

The cores and dredges described in this report were taken on the KH-72-2 Expedition in October-December, 1972 by the Ocean Research Institute, University of Tokyo from the R/V Hakuho Maru. A total of 21 cores and dredge sites have been recovered.

Seawater carbonate chemistry and community calcification during Miyako Island (Japan) coral reef studies, 1994

Coral reefs are characterized by enormous carbonate production of the organisms. It is known that rapid calcification is linked to photosynthesis under control of the carbonate equilibrium in seawater. We have established a model simulating the coexisting states of photosynthesis and calcification in order to examine the effects of photosynthesis and calcification on the carbonate system in seawater. Supposing that the rates of photosynthesis and calcification are proportional to concentrations of their inorganic carbon source, the model calculations indicate that three kinds of unique interactions of the organic and inorganic carbon productions are expected. These are photosynthetic enhancement of calcification, calcification which benefits photosynthesis and carbonate dissolution induced by respiration. The first effect appears when the photosynthetic rate is more than approximately 1.2 larger than that of calcification. This effect is caused by the increase of CO3 content and carbonate saturation degree in seawater. If photosynthesis use molecular carbon dioxide, the second effect occurs when the calcification rate is more than approximately 1.6 times larger than that of photosynthesis. Time series model experiments indicate that photosynthesis and calcification potentially enhance each other and that organic and inorganic carbon is produced more efficiently in the coexisting system than in the isolated reactions. These coexisting effects on production enhancement of photosynthesis and calcification are expected to appear not only in the internal pool of organisms but also in a reef environment which is isolated from the outer ocean during low tide. According to the measurements on the fringing type Shiraho Reef in the Ryukyu Islands, the diurnal change of water properties (pH, total alkalinity, total carbon dioxide and carbonate saturation degree) were conspicuous. This environment offers an appropriate condition for the appearance of these coexisting effects. The photosynthetic enhancement of calcification and the respiratory inducement of decalcification were observed during day-time and night-time slack-water periods, respectively. These coexisting effects, especially the photosynthetic enhancement of calcification, appear to play important roles for fluorishing coral reef communities.

High resolution in situ microsensor measurements of oxygen and temperature at a vesicomyid clam colony in the Japan Deep Sea Trench

Oxygen penetration depth and temperature at the rim of the clam colony was measured with a small deep-sea microprofiler module (Treude et al., 2009), carrying 3 oxygen Clark-type microelectrodes (Revsbech et al., 1980) and one temperature sensor (Pt100, UST Umweltsensorentechnik GmbH, Germany). High-resolution microprofiles across the sediment-water interface were measured with a vertical resolution of 100 µm on a total length of 15 cm. Oxygen electrodes had a linear response to the oxygen concentration in seawater and were calibrated in situ using constant readings in the bottom water (oxygen concentration determined by Winkler titration) and the anoxic parts of the sediment.

Middle Miocene to Quaternary diatoms in the Nankai Trough and Japan Trench

During Leg 87 of the Deep Sea Drilling Project, eleven holes were drilled at Sites 582 and 583 in the Nankai Trough, off Shikoku, southwestern Honshu, and three holes at Site 584 in the Japan Trench, off northeastern Honshu, Japan. In the former area, a low-latitude diatom zone called the Pseudoeunotia doliolus Zone is recognized in thick upper Quaternary sediments, which yield rare but characteristic admixtures of marine planktonic, marine tychopelagic-tobenthic, and nonmarine diatoms. In the latter area, all the sediments recovered contain abundant to common diatoms, allowing recognition of 12 continuous diatom zones from upper Quaternary through lower middle Miocene. Three hiatuses occur in this area around the Pleistocene/Pliocene boundary and in the upper and middle Miocene. In addition, 19 modified diatom zones for a lower Miocene through upper Quaternary interval are proposed. These middle-to-highlatitude zones are numerically coded (NPD1-NPD12) and represent the entire North Pacific. The establishment of these zones is based primarily on Leg 87 data and other DSDP materials and partially on several Japanese subaerial sequences. Correlation of the new zonal framework with previously established frameworks is attempted by the evaluation of operational usefulness of previously used datums. Resting spores of Chaetoceros and its related forms are recorded with specific intent for the first time, and possible ramifications of its frequency variation are presented. Nine new species are proposed: Delphineis sheshukovae Akiba n. sp., Denticulopsis praelauta Akiba and Koizumi n. sp., Kisseleviella ezoensis Akiba n. sp., Nitzschia umaoiensis Akiba n. sp., Thalassiosira jouseae Akiba n. sp., T. praenidulus Akiba n. sp., T. sancettae Akiba n. sp., T. umaoiensis Akiba n. sp., and T. urahoroensis Akiba n. sp. Transfers of systematic positions of the following four taxa are also proposed: Delphineis simonsenii (Mertz) Akiba n. comb., Ikebea tenuis (Brun) Akiba n. comb., Thalassiosira delicata (Barron) Akiba n. stat., and Thalassiothrixrobusta (Schrader) Akiba n. comb.

Mineralogy of cold seep sediment inhabited by vesicomyid clams in the Japan Deep Sea Trench

Sediment sampling was performed at the center of the clam colony. Immediately after sample recovery onboard, the sediment core was sub-sampled and preserved for later analyses. Pyrite and carbonate content of the sediment was measured by X-ray refraction analysis as previously described (Ertefai et al., 2010).

Sampling sites, sampled birds and plants of young larch plantations in Tokachi district, eastern Hokkaido, northern Japan, 2011

Models and data used to describe species-area relationships confound sampling with ecological process as they fail to acknowledge that estimates of species richness arise due to sampling. This compromises our ability to make ecological inferences from and about species-area relationships. We develop and illustrate hierarchical community models of abundance and frequency to estimate species richness. The models we propose separate sampling from ecological processes by explicitly accounting for the fact that sampled patches are seldom completely covered by sampling plots and that individuals present in the sampling plots are imperfectly detected. We propose a multispecies abundance model in which community assembly is treated as the summation of an ensemble of species-level Poisson processes and estimate patch-level species richness as a derived parameter. We use sampling process models appropriate for specific survey methods. We propose a multispecies frequency model that treats the number of plots in which a species occurs as a binomial process. We illustrate these models using data collected in surveys of early-successional bird species and plants in young forest plantation patches. Results indicate that only mature forest plant species deviated from the constant density hypothesis, but the null model suggested that the deviations were too small to alter the form of species-area relationships. Nevertheless, results from simulations clearly show that the aggregate pattern of individual species density-area relationships and occurrence probability-area relationships can alter the form of species-area relationships. The plant community model estimated that only half of the species present in the regional species pool were encountered during the survey. The modeling framework we propose explicitly accounts for sampling processes so that ecological processes can be examined free of sampling artefacts. Our modeling approach is extensible and could be applied to a variety of study designs and allows the inclusion of additional environmental covariates.