Ancient DNA from South-East Europe Reveals Different Events during Early and Middle Neolithic Influencing the European Genetic Heritage

The importance of the process of Neolithization for the genetic make-up of European populations has been hotly debated, with shifting hypotheses from a demic diffusion (DD) to a cultural diffusion (CD) model. In this regard, ancient DNA data from the Balkan Peninsula, which is an important source of information to assess the process of Neolithization in Europe, is however missing. In the present study we show genetic information on ancient populations of the South-East of Europe. We assessed mtDNA from ten sites from the current territory of Romania, spanning a time-period from the Early Neolithic to the Late Bronze Age. mtDNA data from Early Neolithic farmers of the Starcevo Cris culture in Romania (Carcea, Gura Baciului and Negrilesti sites), confirm their genetic relationship with those of the LBK culture (Linienbandkeramik Kultur) in Central Europe, and they show little genetic continuity with modern European populations. On the other hand, populations of the Middle-Late Neolithic (Boian, Zau and Gumelnita cultures), supposedly a second wave of Neolithic migration from Anatolia, had a much stronger effect on the genetic heritage of the European populations. In contrast, we find a smaller contribution of Late Bronze Age migrations to the genetic composition of Europeans. Based on these findings, we propose that permeation of mtDNA lineages from a second wave of Middle-Late Neolithic migration from North-West Anatolia into the Balkan Peninsula and Central Europe represent an important contribution to the genetic shift between Early and Late Neolithic populations in Europe, and consequently to the genetic make-up of modern European populations.

Variation in yellowfin tuna (Thunnus albacares) catches related to El Niño-Southern Oscillation events at the entrance to the Gulf of California

Fishery catch data on yellowfin tuna (Thunnus albacares) were examined to study the effects of El Niño events between 1990 and 1999 for an area in the northeastern tropical Pacific (18−24°N, 112−104°W). The data were extracted from a database of logbook records from the Mexican tuna purse-seine f leet. Latitudinal distribution of the catches increased from south to north for the 10-year period. Highest catches and effort were concentrated between 22°N and 23°N. This area accumulated 48% of the total catch over the 10year period. It was strongly correlated with El Niño-Southern Oscillation (ENSO) events. At least two periods of exceptionally high catches occurred following El Niño events in 1991 and 1997. Peaks of catches were triggered by the arrival of positive anomalies of sea surface temperature (SST) to the area. A delay of two to four months was observed between the occurrence of maximum SST anomalies at the equator and peaks of catch. Prior to these two events, negative SST anomalies were the dominant feature in the study area and catch was extremely low. This trend of negative SST anomalies with low catches followed by positive SST anomalies and high catches may be attributed to northward yellowfin tuna migration patterns driven by El Niño forcing, a result that contrasts with the known behavior of decreasing relative abundance of these tuna after El Niño events in the eastern Pacific. However, this decrease in relative abundance may be the result of a local or subregional effect.

Effects of El Niño events on energy demand and egg production of rockfish (Scorpaenidae: Sebastes): a bioenergetics approach

Fish bioenergetics models estimate relationships between energy budgets and environmental and physiological variables. This study presents a generic rockfish (Sebastes) bioenergetics model and estimates energy consumption by northern California blue rockf ish (S. mystinus) under average (baseline) and El Niño conditions. Compared to males, female S. mystinus required more energy because they were larger and had greater reproductive costs. When El Niño conditions (warmer temperatures; lower growth, condition, and fecundity) were experienced every 3−7 years, energy consumption decreased on an individual and a per-recruit basis in relation to baseline conditions, but the decrease was minor (<4% at the individual scale, <7% at the per-recruit scale) compared to decreases in female egg production (12−19% at the individual scale, 15−23% at the per-recruit scale). When mortality in per-recruit models was increased by adding fishing, energy consumption in El Niño models grew more similar to that seen in the baseline model. However, egg production decreased significantly — an effect exacerbated by the frequency of El Niño events. Sensitivity analyses showed that energy consumption estimates were most sensitive to respiration parameters, energy density, and female fecundity, and that estimated consumption increased as parameter uncertainty increased. This model provides a means of understanding rockfish trophic ecology in the context of community structure and environmental change by synthesizing metabolic, demographic, and environmental information. Future research should focus on acquiring such information so that models like the bioenergetics model can be used to estimate the effect of climate change, community shifts, and different harvesting strategies on rockfish energy demands.

Northerly Distribution of White Sharks, Carcharodon carcharias, in the Eastern Pacific and Relation to ENSO Events

Twenty-nine verified records of white sharks, Carcharodon carcharias, from British Columbia and Alaska waters (1961–2004) are presented. Record locations ranged from lat. 48°48ʹN to lat. 60°17ʹN, including the northernmost occurrence of a white shark and the first report of this species from the central Bering Sea. White sharks recorded from the study area were generally large, with 95% falling between 3.8 and 5.4 m in length. Mature white sharks of both sexes occur in British Columbia and Alaska waters, although they do not necessarily reproduce there. White sharks actively feed in the study area; their diet is similar to that reported for this species from Washington and northern California waters. Sea surface temperature (SST) concurrent with white shark records from the study area ranged from 16°C to between 6.4°C and 5.0°C, extending the lower extreme of the range of SST from which this species has been previously reported. White shark strandings are rarely reported, yet 16 (55%) of the records in this study are of beached animals; strandings generally occurred later in the year and at lower latitudes than nonstrandings. No significant correlation was found between white shark records in the study area and El Niño events and no records occurred during La Niña events. The data presented here indicate that white sharks are more abundant in the cold waters of British Columbia and Alaska than previous records suggest.

Substratos para uso em telhados verdes: Avaliação da retenção hídrica e qualidade da água de escoamento.

Telhados verdes são uma alternativa interessante para mitigar o risco de enchentes dada a enorme área de telhados não utilizada das superfícies impermeáveis nas áreas urbanas. Graças a sua capacidade de armazenagem de água, os telhados verdes podem reduzir significativamente o pico de escoamento dos eventos de maior pluviosidade. Investigações sobre a composição de substratos baseados em materiais locais e projetos adequados para regiões climáticas tropicais são menos frequentes. Vegetação e substrato são elementos de um telhado verde que precisam ser adaptados para cada microclima e não universalizados. O objetivo deste estudo foi avaliar o desempenho de diferentes composições de substratos baseados em solo local, biomassa de coco, condicionador de solo e componentes comerciais, com a finalidade de maximizar a capacidade de retenção da água de chuva e diminuir necessidades de manutenção. Um pré-ensaio de colunas avaliou a capacidade de retenção hídrica e a relação peso seco x peso úmido de 15 composições de substrato. As composições com melhores resultados constituíram os substratos S1(15% solo + 55% coco + 30%componentes comerciais), S2 (30% solo + 40% coco + 30%componentes comerciais) e S3 (60% solo + 10% coco + 30%componentes comerciais). A caracterização físico-química dos substratos, solo e fibra de coco foi realizada. Em seguida um teste de colunas avaliou a capacidade de retenção hídrica dos substratos sob duas condições de precipitação: uma leve (8,77 mm/h); e outra mais forte (42,0 mm/h). Os resultados apontaram que os substratos S2 e S3 apresentaram melhores resultados de retenção para ambas as intensidades de precipitação. Observou-se que S1, que apresentou melhor capacidade de retenção no pré-ensaio, teve desempenho inferior aos demais o que pode ser atribuído à maior concentração de fibra de coco na sua composição e o consequente surgimento de caminhos preferenciais ao longo do perfil da coluna, por onde a água escoou mais rapidamente. Em eventos de precipitação mais leve, os substratos reteram de 60 a 100% do total aplicado. Quando se aplicou uma intensidade de precipitação mais forte, a faixa de retenção ficou entre 40% e 59%. No entanto, as variáveis analisadas para avaliar a qualidade da água de escoamento dos substratos (pH, CE, P, NO3, NH4, Ca, Mg, Cu, Fe, Mn, Zn, Cr, Co, Ni) ficaram acima dos valores comumente encontrados na literatura, indicando que as composições aqui adotadas para os substratos podem implicar em uma fonte de poluição hídrica. Os substratos para uso em telhados verdes apresentados neste estudo atenderam seu objetivo quanto à retenção hídrica, mas a qualidade da água percolada torna seu uso inviável até o momento. Verificou-se a necessidade de estudar mais profundamente a qualidade da água lixiviada por cada componente dos substratos, individualmente, a fim de identificar as fontes dos elementos que presentes em concentrações elevadas tornam-se poluentes. Pode ser considerada a remoção de algum (s) dos componentes presentes na composição para se atingir um nível satisfatório de qualidade da água de escoamento.

Effects of El Niño–Southern Oscillation events on catches of Bigeye Tuna (Thunnus obesus) in the eastern Indian Ocean off Java

The effects of El Niño–Southern Oscillation events on catches of Bigeye Tuna (Thunnus obesus) in the eastern Indian Ocean (EIO) off Java were evaluated through the use of remotely sensed environmental data (sea-surface-height anomaly [SSHA], sea-surface temperature [SST], and chlorophyll a concentration), and Bigeye Tuna catch data. Analyses were conducted for the period of 1997–2000, which included the 1997–98 El Niño and 1999–2000 La Niña events. The empirical orthogonal function (EOF) was applied to examine oceanographic parameters quantitatively. The relationship of those parameters to variations in catch distribution of Bigeye Tuna was explored with a generalized additive model (GAM). The mean hook rate was 0.67 during El Niño and 0.44 during La Niña, and catches were high where SSHA ranged from –21 to 5 cm, SST ranged from 24°C to 27.5°C, and chlorophyll-a concentrations ranged from 0.04 to 0.16 mg m–3. The EOF analysis confirmed that the 1997–98 El Niño affected oceanographic conditions in the EIO off Java. The GAM results indicated that SST was better than the other environmental factors (SSHA and chlorophyll-a concentration) as an oceanographic predictor of Bigeye Tuna catches in the region. According to the GAM predictions, the highest probabilities (70–80%) for Bigeye Tuna catch in 1997–2000 occurred during oceanographic conditions during the 1997–98 El Niño event.

Relationships between ENSO events and San Francisco rainfall, 1949-1991

As California entered its sixth consecutive year of drought, the onset of a positive sea surface temperature anomaly in the equatorial Pacific and other indicators of a developing ENSO event were observed. This brought the following question from the media, water officials, and the public: What effect will El Niño have on the current rainfall season in general and on the intraseasonal distribution of rain in particular? To answer the question, the historical San Francisco rainfall record was examined in relationship to previous ENSO events.

Comparative analysis of three brevetoxin-associated bottlenose dolphin (Tursiops truncatus) mortality events in the Florida Panhandle region (USA)

In the Florida Panhandle region, bottlenose dolphins (Tursiops truncatus) have been highly susceptible to large-scale unusual mortality events (UMEs) that may have been the result of exposure to blooms of the dinoflagellate Karenia brevis and its neurotoxin, brevetoxin (PbTx). Between 1999 and 2006, three bottlenose dolphin UMEs occurred in the Florida Panhandle region. The primary objective of this study was to determine if these mortality events were due to brevetoxicosis. Analysis of over 850 samples from 105 bottlenose dolphins and associated prey items were analyzed for algal toxins and have provided details on tissue distribution, pathways of trophic transfer, and spatial-temporal trends for each mortality event. In 1999/2000, 152 dolphins died following extensive K. brevis blooms and brevetoxin was detected in 52% of animals tested at concentrations up to 500 ng/g. In 2004, 105 bottlenose dolphins died in the absence of an identifiable K. brevis bloom; however, 100% of the tested animals were positive for brevetoxin at concentrations up to 29,126 ng/mL. Dolphin stomach contents frequently consisted of brevetoxin-contaminated menhaden. In addition, another potentially toxigenic algal species, Pseudo-nitzschia, was present and low levels of the neurotoxin domoic acid (DA) were detected in nearly all tested animals (89%). In 2005/2006, 90 bottlenose dolphins died that were initially coincident with high densities of K. brevis. Most (93%) of the tested animals were positive for brevetoxin at concentrations up to 2,724 ng/mL. No DA was detected in these animals despite the presence of an intense DA-producing Pseudo-nitzschia bloom. In contrast to the absence or very low levels of brevetoxins measured in live dolphins, and those stranding in the absence of a K. brevis bloom, these data, taken together with the absence of any other obvious pathology, provide strong evidence that brevetoxin was the causative agent involved in these bottlenose dolphin mortality events.

Shallow-water benthic habitats of southwest Puerto Rico

This report describes the creation and assessment of benthic habitat maps for shallow-water (<30m) marine environments of the Guánica/Parguera and Finca Belvedere Natural Reserve in southwest Puerto Rico. The objective was to provide spatially-explicit information on the habitat types, biological cover and live coral cover of the region’s coral reef ecosystem. These fine-scale habitat maps, generated by interpretation of 2010 satellite imagery, provide an update to NOAA’s previous digital maps of the U.S. Caribbean (Kendall et al., 2001) for these areas. Updated shallow-water benthic habitat maps for the Guánica/Parguera region are timely in light of ongoing restoration efforts in the Guánica Bay watershed. The bay is served directly by one river, the Rio Loco, which flows intermittently and more frequently during the rainy season. The watershed has gone through a series of manipulations and alterations in past decades, mainly associated with agricultural practices, including irrigation systems, in the upper watershed. The Guánica Lagoon, previously situated to the north of the bay, was historically the largest freshwater lagoon in Puerto Rico and served as a natural filter and sediment sink prior to the discharge of the Rio Loco into the Bay. Following alterations by the Southwest Water Project in the 1950s, the Lagoon’s adjacent wetland system was ditched and drained; no longer filtering and trapping sediment from the Rio Loco. Land use in the Guánica Bay/Rio Loco watershed has also gone through several changes (CWP, 2008). Similar to much of Puerto Rico, the area was largely deforested for sugar cane cultivation in the 1800s, although reforestation of some areas occurred following the cessation of sugar cane production (Warne et al., 2005). The northern area of the watershed is generally mountainous and is characterized by a mix of forested and agricultural lands, particularly coffee plantations. Closer to the coast, the Lajas Valley Agricultural Reserve extends north of Guánica Bay to the southwest corner of the island. The land use practices and watershed changes outlined above have resulted in large amounts of sediment being distributed in the Rio Loco river valley (CWP, 2008). Storm events and seasonal flooding also transport large amounts of sediment to the coastal waters. The threats of upstream watershed practices to coral reefs and the nearshore marine environment have been gaining recognition. Guánica Bay, and the adjacent marine waters, has been identified as a “management priority area” by NOAA’s Coral Reef Conservation Program (CRCP, 2012). In a recent Guánica Bay watershed management plan, several critical issues were outlined in regards to land-based sources of pollution (LBSP; CWP, 2008). These include: upland erosion from coffee agriculture, filling of reservoirs with sediment, in-stream channel erosion, loss of historical Guánica lagoon, legacy contaminants and sewage treatment (CWP, 2008). The plan recommended several management actions that could be taken to reduce impacts of LBSP, which form the basis of Guánica watershed restoration efforts.