The structure of human tRNALys3 anticodon bound to HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs

Replication of human immunodeficiency virus (HIV) requires base pairing of the reverse transcriptase primer, human tRNA(Lys3), to the viral RNA. Although the major complementary base pairing occurs between the HIV primer binding sequence (PBS) and the tRNA's 3'-terminus, an important discriminatory, secondary contact occurs between the viral A-rich Loop I, 5'-adjacent to the PBS, and the modified, U-rich anticodon domain of tRNA(Lys3). The importance of individual and combined anticodon modifications to the tRNA/HIV-1 Loop I RNA's interaction was determined. The thermal stabilities of variously modified tRNA anticodon region sequences bound to the Loop I of viral sub(sero)types G and B were analyzed and the structure of one duplex containing two modified nucleosides was determined using NMR spectroscopy and restrained molecular dynamics. The modifications 2-thiouridine, s(2)U(34), and pseudouridine, Psi(39), appreciably stabilized the interaction of the anticodon region with the viral subtype G and B RNAs. The structure of the duplex results in two coaxially stacked A-form RNA stems separated by two mismatched base pairs, U(162)*Psi(39) and G(163)*A(38), that maintained a reasonable A-form helix diameter. The tRNA's s(2)U(34) stabilized the interaction between the A-rich HIV Loop I sequence and the U-rich anticodon, whereas the tRNA's Psi(39) stabilized the adjacent mismatched pairs.

Pairs Trading -strategia Suomen osakemarkkinoilla

Tutkielman tavoitteena on selvittää soveltuvatko suomalaiset osakkeet parikaupankäyntiin ja voidaanko niillä luoda tuottavia kaupankäyntistrategioita. Tutkielmassa tarkastellaan pystytäänkö suomalaisista osakkeista muodostamaan parikaupankäynnin kannalta toimivia osakepareja. Aineisto koostuu kaikkiaan 53 tutkitusta yrityksestä, joiden joukosta valitaan paras osakepari kultakin viideltä toimialalta. Tutkimusperiodi käsittää vuodet 2004–2007, eli se sisältää noin 1000 kaupankäyntipäivää per osa-ke. Viittä valittua osakeparia tutkitaan tarkemmin tilastollisilla ja teknisillä analyysimenetelmillä. Empiiristen tulosten perusteella suomalaiset osakkeet soveltuvat hyvin parikaupankäyntiin. Jokaisella viidellä tutkitulla osakeparilla ilmeni selvää hintojen erkaantumista ja konvergoitumista, joten niillä olisi tutkimuspe-riodin aikana pystynyt käymään menestyksekästä parikauppaa.

Synthesis of Janus compounds for the recognition of G-U mismatched nucleobase pairs

The design and synthesis of two Janus-type heterocycles with the capacity to simultaneously recognize guanine and uracyl in G-U mismatched pairs through complementary hydrogen bond pairing is described. Both compounds were conveniently functionalized with a carboxylic function and efficiently attached to a tripeptide sequence by using solid-phase methodologies. Ligands based on the derivatization of such Janus compounds with a small aminoglycoside, neamine, and its guanidinylated analogue have been synthesized, and their interaction with Tau RNA has been investigated by using several biophysical techniques, including UV-monitored melting curves, fluorescence titration experiments, and 1H NMR. The overall results indicated that Janus-neamine/guanidinoneamine showed some preference for the +3 mutated RNA sequence associated with the development of some tauopathies, although preliminary NMR studies have not confirmed binding to G-U pairs. Moreover, a good correlation has been found between the RNA binding affinity of such Janus-containing ligands and their ability to stabilize this secondary structure upon complexation.