Circles: The replication-recombination-chromosome segregation connection

Crossing over by homologous recombination between monomeric circular chromosomes generates dimeric circular chromosomes that cannot be segregated to daughter cells during cell division. In Escherichia coli, homologous recombination is biased so that most homologous recombination events generate noncrossover monomeric circular chromosomes. This bias is lost in ruv mutants. A novel protein, RarA, which is highly conserved in eubacteria and eukaryotes and is related to the RuvB and the DnaX proteins, γ and τ, may influence the formation of crossover recombinants. Those dimeric chromosomes that do form are converted to monomers by Xer site-specific recombination at the recombination site dif, located in the replication terminus region of the E. coli chromosome. The septum-located FtsK protein, which coordinates cell division with chromosome segregation, is required for a complete Xer recombination reaction at dif. Only correctly positioned dif sites present in a chromosomal dimer are able to access septum-located FtsK. FtsK acts by facilitating a conformational change in the Xer recombination Holliday junction intermediate formed by XerC recombinase. This change provides a substrate for XerD, which then completes the recombination reaction.

Effects of mutations involving cell division, recombination, and chromosome dimer resolution on a priA2∷kan mutant

Recombinational repair of replication forks can occur either to a crossover (XO) or noncrossover (non-XO) depending on Holliday junction resolution. Once the fork is repaired by recombination, PriA is important for restarting these forks in Escherichia coli. PriA mutants are Rec− and UV sensitive and have poor viability and 10-fold elevated basal levels of SOS expression. PriA sulB mutant cells and their nucleoids were studied by differential interference contrast and fluorescence microscopy of 4′,6-diamidino-2-phenylindole-stained log phase cells. Two populations of cells were seen. Eighty four percent appeared like wild type, and 16% of the cells were filamented and had poorly partitioned chromosomes (Par−). To probe potential mechanisms leading to the two populations of cells, mutations were added to the priA sulB mutant. Mutating sulA or introducing lexA3 decreased, but did not eliminate filamentation or defects in partitioning. Mutating either recA or recB virtually eliminated the Par− phenotype. Filamentation in the recB mutant decreased to 3%, but increased to 28% in the recA mutant. The ability to resolve and/or branch migrate Holliday junctions also appeared crucial in the priA mutant because removing either recG or ruvC was lethal. Lastly, it was tested whether the ability to resolve chromosome dimers caused by XOs was important in a priA mutant by mutating dif and the C-terminal portion of ftsK. Mutation of dif showed no change in phenotype whereas ftsK1∷cat was lethal with priA2∷kan. A model is proposed where the PriA-independent pathway of replication restart functions at forks that have been repaired to non-XOs.

Estudo e prática da tradução da obra infantil A terra dos meninos pelados, de Graciliano Ramos, do português para o Nheengatu

O nheengatu, ou língua geral amazônica, foi veiculado nos séculos passados em vasto território, servindo como língua franca ao longo de muitos rios da Bacia Amazônica. O idio-ma da família tupi-guarani foi gradualmente superado e substituído pelo português como lín-gua de comunicação supraétnica na região, mas continua sendo falado em algumas localida-des, sobretudo na sub-bacia do Rio Negro, onde, desde 2002, tem status de idioma co-oficial no município de São Gabriel da Cachoeira, no Estado do Amazonas. O estudo aqui apresenta-do consiste na tradução do livro infantil A terra dos meninos pelados, de Graciliano Ramos, do português para o nheengatu, bem como nas pesquisas e conjecturas que fundamentaram as escolhas tradutórias. Este trabalho, que se enquadra no conceito de traduzir com o objetivo de fortalecer a língua/cultura-alvo, foi concebido como um potencial auxílio no desenvolvimento de uma literatura escrita em nheengatu, já que isso pode ser fundamental para a sobrevivência deste idioma ao longo das décadas vindouras. Por um lado, a tradução para uma língua de tradição oral, sem grafia unificada ou gramática normativa, impõe dificuldades à tarefa do tradutor e exige um concomitante estudo linguístico atencioso. Os importantes registros da língua feitos ao longo dos séculos passados, por outro lado, quando confrontados com as vari-antes atualmente veiculadas no Rio Negro, possibilitaram uma pesquisa lexical que teve papel fundamental nas escolhas tradutórias.

Caracterização macro e micromorfológica do solo para compreensão de processos erosivos lineares, topossequência Manacá, São Carlos - SP

A presente pesquisa tem como objetivo compreender a dinâmica de comportamento do solo sob escala macro e micromorfológica visualizados em topossequência, no que concerne aos agentes morfológicos que condicionam e contribuem para deflagração de processos erosivos. A área de estudo está inserida na sub-bacia hidrográfica do Laranja Azeda localizada na região centro-leste do estado de São Paulo, no município de São Carlos/SP, e têm fundamental importância por pertencer à bacia hidrográfica do Ribeirão Feijão, importante manancial urbano para a cidade. O planejamento de uso e ocupação adequados aos fatores físicos que compõe a dinâmica desta paisagem são essenciais visando a conservação e preservação dos recursos hídricos ali existentes, onde a expressiva ocorrência de processos erosivos são objetos de preocupação, já que estes podem causar assoreamento de rios e reservatórios. Utilizando uma metodologia multiescalar para seleção da área de pesquisa em detalhe e compreensão da organização e dinâmica da cobertura pedológica, foram utilizados os procedimentos propostos pela Análise Estrutural da Cobertura Pedológica e conceitos e técnicas da micromorfologia de solos. Verifica-se que a distribuição dos solos na Topossequência Manacá está estritamente correlacionada à transformação vertical do materialde origem em solo, em cuja vertente existe uma diferenciação litológica que condiciona a morfologia diferenciada, tanto em escala macromorfológica quanto micromorfológica. O terço superior e médio da vertente está associado à depósitos colúvio-eluvionaresda Formação Itaqueri, onde desenvolve-se um Latossolo Vermelho Amarelo. Já o terço inferior da vertente corresponde a um solo formado a partir dos arenitos da Formação Botucatu, sendo enquadrado enquanto Neossolo Quartzarênico. Com o auxílio técnicas de análise bidimensional de imagens retiradas das lâminas delgadas de solo, foi possível visualizar e quantificar a macroposidade ao longo da vertente, importante atributo morfológico que controla os fluxos de água e são agentes condicionantes para o desenvolvimento de processos erosivos. Conclui-se que a ocorrência de voçorocas no terço médio inferior da vertente é a materialização em forma de processos erosivos deste comportamento diferencial da massa do solo, onde portanto, na Topossequência Manacá a busca de equilíbrio dinâmico na vertente é induzida pela dinâmica genética evolutiva das formações geológicas que sustentam a paisagem, desencadeada em processos erosivos que tendem a progredir em desequilíbrio, a depender do manejo estabelecido para o local.

Validation of a mobility item bank for older patients in primary care

Background: To develop and validate an item bank to measure mobility in older people in primary care and to analyse differential item functioning (DIF) and differential bundle functioning (DBF) by sex. Methods: A pool of 48 mobility items was administered by interview to 593 older people attending primary health care practices. The pool contained four domains based on the International Classification of Functioning: changing and maintaining body position, carrying, lifting and pushing, walking and going up and down stairs. Results: The Late Life Mobility item bank consisted of 35 items, and measured with a reliability of 0.90 or more across the full spectrum of mobility, except at the higher end of better functioning. No evidence was found of non-uniform DIF but uniform DIF was observed, mainly for items in the changing and maintaining body position and carrying, lifting and pushing domains. The walking domain did not display DBF, but the other three domains did, principally the carrying, lifting and pushing items. Conclusions: During the design and validation of an item bank to measure mobility in older people, we found that strength (carrying, lifting and pushing) items formed a secondary dimension that produced DBF. More research is needed to determine how best to include strength items in a mobility measure, or whether it would be more appropriate to design separate measures for each construct.

Completing the Banking Union: Deposit Insurance. CEPS Policy Brief No. 335, 3 December 2015

It is generally agreed that a Banking Union should have common or ‘single’ institutions responsible for carrying out three basic functions: supervision, resolution and deposit insurance. So far, however, agreement has been reached in the EU on only the first two of these functions. The Commission has now presented its proposal on how to complete the Banking Union with a European Deposit Insurance Scheme (EDIS). It is an innovative and courageous proposal. It is courageous because it will clearly be very controversial in a number of member states (especially Germany) and it is innovative because it proposes a three-stage process, starting with re-insurance, then switching to co-insurance and finally to full direct insurance of deposits via a ‘single’ Deposit Insurance Fund (DIF). This final stage should be reached in 2024, which is also the date at which the Single Resolution Fund (SRF) will become the only source of financing for bank resolution. The Commission’s proposal calls for integrating the decision-making for EDIS into the decision-making entity for the SRF, namely the existing Single Resolution Board (SRB). This makes sense if one views resolution and deposit insurance as two highly interlinked dimensions of dealing with banks in trouble. In this view the two dimensions should be bundled into one institution – and one suspects that over time the two funds (the SRF and the DIF) could be merged into one. This Policy Brief argues that re-insurance should not be considered as a transitory phase, but could also provide a solution for the long run. ‘Experience rating’ could be used to ensure a proper pricing of risk and to protect the interests of the depositors in countries with safer banking systems. Moreover, EDIS should have a decision-making structure separate from and independent of the SRM, since it has mainly a macroeconomic function.

Regulation of Nuclear Factor κB (NF-κB) Transcriptional Activity via p65 Acetylation by the Chaperonin Containing TCP1 (CCT)

The NF-κB family member p65 is central to inflammation and immunity. The purpose of this study was to identify and characterize evolutionary conserved genes modulating p65 transcriptional activity. Using an RNAi screening approach, we identified chaperonin containing TCP1 subunit η (CCTη) as a regulator of Drosophila NF-κB proteins, Dorsal and Dorsal-related immunity factor (Dif). CCTη was also found to regulate NF-κB-driven transcription in mammalian cells, acting in a promoter-specific context, downstream of IκB kinase (IKK). CCTη knockdown repressed IκBα and CXCL2/MIP2 transcription during the early phase of NF-κB activation while impairing the termination of CCL5/RANTES and CXCL10/IP10 transcription. The latter effect was associated with increased DNA binding and reduced p65 acetylation, presumably by altering the activity of histone acetyltransferase CREB-binding protein (CBP). We identified p65 lysines (K) 122 and 123 as target residues mediating the CCTη-driven termination of NF-κB-dependent transcription. We propose that CCTη regulates NF-κB activity in a manner that resolves inflammation.

Avaliação da discrepância maxilar posterior e a sua relação com o padrão de crescimento facial vertical

Dissertação para obtenção do grau de Mestre no Instituto Superior de Ciências da Saúde Egas Moniz

When do conservation planning methods deliver? Quantifying the consequences of uncertainty

The rapid global loss of biodiversity has led to a proliferation of systematic conservation planning methods. In spite of their utility and mathematical sophistication, these methods only provide approximate solutions to real-world problems where there is uncertainty and temporal change. The consequences of errors in these solutions are seldom characterized or addressed. We propose a conceptual structure for exploring the consequences of input uncertainty and oversimpli?ed approximations to real-world processes for any conservation planning tool or strategy. We then present a computational framework based on this structure to quantitatively model species representation and persistence outcomes across a range of uncertainties. These include factors such as land costs, landscape structure, species composition and distribution, and temporal changes in habitat. We demonstrate the utility of the framework using several reserve selection methods including simple rules of thumb and more sophisticated tools such as Marxan and Zonation. We present new results showing how outcomes can be strongly affected by variation in problem characteristics that are seldom compared across multiple studies. These characteristics include number of species prioritized, distribution of species richness and rarity, and uncertainties in the amount and quality of habitat patches. We also demonstrate how the framework allows comparisons between conservation planning strategies and their response to error under a range of conditions. Using the approach presented here will improve conservation outcomes and resource allocation by making it easier to predict and quantify the consequences of many different uncertainties and assumptions simultaneously. Our results show that without more rigorously generalizable results, it is very dif?cult to predict the amount of error in any conservation plan. These results imply the need for standard practice to include evaluating the effects of multiple real-world complications on the behavior of any conservation planning method.

Uncovering the root cause of ethnic difference in ability testing:differential test functioning, test familiarity and trait optimism as explanations of ethnic group differences

The present research represents a coherent approach to understanding the root causes of ethnic group differences in ability test performance. Two studies were conducted, each of which was designed to address a key knowledge gap in the ethnic bias literature. In Study 1, both the LR Method of Differential Item Functioning (DIF) detection and Mixture Latent Variable Modelling were used to investigate the degree to which Differential Test Functioning (DTF) could explain ethnic group test performance differences in a large, previously unpublished dataset. Though mean test score differences were observed between a number of ethnic groups, neither technique was able to identify ethnic DTF. This calls into question the practical application of DTF to understanding these group differences. Study 2 investigated whether a number of non-cognitive factors might explain ethnic group test performance differences on a variety of ability tests. Two factors – test familiarity and trait optimism – were able to explain a large proportion of ethnic group test score differences. Furthermore, test familiarity was found to mediate the relationship between socio-economic factors – particularly participant educational level and familial social status – and test performance, suggesting that test familiarity develops over time through the mechanism of exposure to ability testing in other contexts. These findings represent a substantial contribution to the field’s understanding of two key issues surrounding ethnic test performance differences. The author calls for a new line of research into these performance facilitating and debilitating factors, before recommendations are offered for practitioners to ensure fairer deployment of ability testing in high-stakes selection processes.

Control of the in-cavity dynamics in mode-locked fibre lasers

At the level of fundamental research, fibre lasers provide convenient and reproducible experimental settings for the study of a variety of nonlinear dynamical processes, while at the applied research level, pulses with different and optimised features – e.g., in terms of pulse duration, temporal and/or spectral intensity profile, energy, repetition rate and emission bandwidth – are sought with the general constraint of developing efficient cavity architectures. In this talk, we review our recent progress on the realisation of different regimes of pulse generation in passively mode-locked fibre lasers through control of the in-cavity propagation dynamics. We report on the possibility to achieve both parabolic self-similar and triangular pulse shaping in a mode-locked fibre laser via adjustment of the net normal dispersion and integrated gain of the cavity [1]. We also show that careful control of the gain/loss parameters of a net-normal dispersion laser cavity provides the means of achieving switching among Gaussian pulse, dissipative soliton and similariton pulse solutions in the cavity [2,3]. Furthermore, we report on our recent theoretical and experimental studies of pulse shaping by inclusion of an amplitude and phase spectral filter into the cavity of a laser. We numerically demonstrate that a mode-locked fibre laser can operate in dif- ferent pulse-generation regimes, including parabolic, flattop and triangular waveform generations, depending on the amplitude profile of the in-cavity spectral filter [4]. An application of technique using a flat-top spectral filter is demonstrated to achieve the direct generation of sinc-shaped optical Nyquist pulses of high quality and of a widely tuneable bandwidth from the laser [5]. We also report on a recently-developed versa- tile erbium-doped fibre laser, in which conventional soliton, dispersion-managed soli- ton (stretched-pulse) and dissipative soliton mode-locking regimes can be selectively and reliably targeted by programming different group-velocity dispersion profiles and bandwidths on an in-cavity programmable filter [6]. References: 1. S. Boscolo and S. K. Turitsyn, Phys. Rev. A 85, 043811 (2012). 2. J. Peng et al., Phys. Rev. A 86, 033808 (2012). 3. J. Peng, Opt. Express 24, 3046-3054 (2016). 4. S. Boscolo, C. Finot, H. Karakuzu, and P. Petropoulos, Opt. Lett. 39, 438-441 (2014). 5. S. Boscolo, C. Finot, and S. K. Turitsyn, IEEE Photon. J. 7, 7802008 (2015). 6. J. Peng and S. Boscolo, Sci. Rep. 6, 25995 (2016).

Under the ABC Umbrella: Orphanages, Rights, and Education in Mexico

The National System for the Integral Development of the Family (DIF) in Mexico assists children in orphanages. This paper provides an overview of its current practices, and advocates a holistic educational/social model for “alternative orphanages,” integrating Maslow’s Hierarchy of Needs and the rights-based approach. The model complements DIF’s social efforts.

Obtenção de organovermiculitas utilizando tensoativos e microemulsões e suas aplicações na separação de isômeros do Xileno

Surfactants are versatile organic compounds that have, in a single molecule, double chemical affinity. The surfactant molecule is composed by a hy drophobic tail group, a hydrocarbon chain (linear, branched, or mixed), and by a hydrophilic head group, which contains polar groups that makes it able to be applied in the organophilization process of natural clays. Microemulsions are microheterogeneous b lends composed by: a surfactant, an oily phase (non - polar solvent), an aqueous phase, and, sometimes, a co - surfactant (short - chain alcohol). They are systems with thermodynamic stability, transparent, and have high solubility power. Vermiculite is a clay m ineral with an expandable crystalline structure that has high cation exchange capacity. In this work vermiculite was used to obtain organoclays. The ionic surfactants dodecyl ammonium chlori de (DDAC) and cetyltrimethylammonium bromide (C 16 TAB) were used in the organophilization process. They were used as surfactant aqueous solutions and, for DDAC, as a microemulsion system. The organoclays were used to promote the separation of binary mixtures of xylene isomers (ortho - and meta - xylene). Dif ferent analytical techniques were used to characterize microemulsion systems and also the nanoclays. It was produced a water - rich microemulsion system with 0.92 nm droplet average diameter. The vermiculite used in this work has a cationic exchange capacity of 172 meq/100g and magnesium as main cation (24.25%). The basal spacing of natural vermiculite and organo - vermiculites were obtained by X - ray Diffraction technique. The basal spacing was 1.48nm for natural vermiculite, 4.01nm for CTAB - vermiculite (CTAB 4 ) , and 3.03nm for DDAC - vermiculite (DDAC M1A), that proves the intercalation process. Separation tests were carried out in glass columns using three binary mixtures of xylene (ortho - xylene and meta - xylene). The results showed that the organovermiculite pre sented an enhanced chemical affinity by the mixture of hydrocarbons, when compared with the natural vermiculite, and also its preference by ortho - xylene. A factorial experimental design 2 2 with triplicate at the central point was used to optimize the xylen e separation process. The experimental design revealed that the initial concentration of isomers in the mixture and the mass of organovermiculite were the significant factors for an improved separation of isomers. In the experiments carried out using a bin ary mixture of ortho - xylene and meta - xylene (2:1), after its percolating through the organovermiculite bed (DDAC M1), it was observed the preference of the organoclay by the ortho - xylene isomer, which was retained in greater quantity than the meta - xylene o ne. At the end of the treatment, it was obtained a final concentration in meta - xylene of 47.52%.

Técnicas en análisis lineal (y no lineal) y aplicaciones

La presente tesis est a centrada en dos temas principales: el primero abarca el primer cap tulo y el segundo se divide entre los cap tulos dos y tres. En el primer cap tulo estudio un problema que apareci o como tal hace relativamente poco tiempo (aunque ya en la segunda mitad del pasado siglo se publicaron una serie de resultados que, con la terminolog a adecuada, estar an englobados dentro de esta teor a). Nos interesaremos en la b usqueda de estructuras algebraicas (como espacios vectoriales, algebras, espacios de Banach) contenidas en subconjuntos de funciones cuyos elementos (con la posible excepci on del elemento nulo) veri can ciertas propiedades anti-intuitivas (propiedades de dif cil visualizaci on). Ello nos puede conducir a la idea de c omo la intuci on puede enga~narnos, y sugerir que, aunque se haya dedicado una ingente cantidad de esfuerzo y tiempo para encontrar un unico ejemplo que veri que tales propiedades, y dicho trabajo pueda dar la idea de que no existen muchos m as espec menes de similares caracter sticas, de hecho existen ejemplares su cientes como para construir espacios \grandes" cuyos elementos (salvo el cero) satisfacen las mismas propiedades. M as espec camente, decimos que un subconjunto de un espacio vectorial topol ogico es -lineable (dado un numero cardinal ) si podemos garantizar la existencia de un espacio vectorial de dimensi on contenido en el conjunto (uni on el elemento cero, en caso de que cero no forme parte del conjunto de partida). Si el espacio vectorial es cerrado, nos referiremos a este conjunto como - espaciable (y la propiedad que trataremos ser a la de -espaciabilidad) y si la estructura en cuesti on es un algebra de Banach, entonces diremos que el conjunto es ( ; )-algebrable (donde aqu es la cardinalidad de un conjunto minimal de generadores del algebra)...

Caractérisation des recombinases XerC et XerD de Proteus mirabilis

Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.