Integration of technologies for understanding the functional relationship between reef habitat and fish growth and production

Functional linkage between reef habitat quality and fish growth and production has remained elusive. Most current research is focused on correlative relationships between a general habitat type and presence/absence of a species, an index of species abundance, or species diversity. Such descriptive information largely ignores how reef attributes regulate reef fish abundance (density-dependent habitat selection), trophic interactions, and physiological performance (growth and condition). To determine the functional relationship between habitat quality, fish abundance, trophic interactions, and physiological performance, we are using an experimental reef system in the northeastern Gulf of Mexico where we apply advanced sensor and biochemical technologies. Our study site controls for reef attributes (size, cavity space, and reef mosaics) and focuses on the processes that regulate gag grouper (Mycteroperca microlepis) abundance, behavior and performance (growth and condition), and the availability of their pelagic prey. We combine mobile and fixed-active (fisheries) acoustics, passive acoustics, video cameras, and advanced biochemical techniques. Fisheries acoustics quantifies the abundance of pelagic prey fishes associated with the reefs and their behavior. Passive acoustics and video allow direct observation of gag and prey fish behavior and the acoustic environment, and provide a direct visual for the interpretation of fixed fisheries acoustics measurements. New application of biochemical techniques, such as Electron Transport System (ETS) assay, allow the in situ measurement of metabolic expenditure of gag and relates this back to reef attributes, gag behavior, and prey fish availability. Here, we provide an overview of our integrated technological approach for understanding and quantifying the functional relationship between reef habitat quality and one element of production – gag grouper growth on shallow coastal reefs.

Part I. Energy straggling of ^4He below 2.0 MeV in Al, Ni, Au and Pt. Part II. Studies of the Ti-W metallization system on Si

Part I.

In recent years, backscattering spectrometry has become an important tool for the analysis of thin films. An inherent limitation, though, is the loss of depth resolution due to energy straggling of the beam. To investigate this, energy straggling of ⁴He has been measured in thin films of Ni, Al, Au and Pt. Straggling is roughly proportional to square root of thickness, appears to have a slight energy dependence and generally decreases with decreasing atomic number of the adsorber. The results are compared with predictions of theory and with previous measurements. While Ni measurements are in fair agreement with Bohr's theory, Al measurements are 30% above and Au measurements are 40% below predicted values. The Au and Pt measurements give straggling values which are close to one another.

Part II.

MeV backscattering spectrometry and X-ray diffraction are used to investigate the behavior of sputter-deposited Ti-W mixed films on Si substrates. During vacuum anneals at temperatures near 700°C for several hours, the metallization layer reacts with the substrate. Backscattering analysis shows that the resulting compound layer is uniform in composition and contains Ti, Wand Si. The Ti:W ratio in the compound corresponds to that of the deposited metal film. X-ray analyses with Reed and Guinier cameras reveal the presence of the ternary Ti_xW_(1-x)Si₂ compound. Its composition is unaffected by oxygen contamination during annealing, but the reaction rate is affected. The rate measured on samples with about 15% oxygen contamination after annealing is linear, of the order of 0.5 Å per second at 725°C, and depends on the crystallographic orientation of the substrate and the dc bias during sputter-deposition of the Ti-W film.

Au layers of about 1000 Å thickness were deposited onto unreacted Ti-W films on Si. When annealed at 400°C these samples underwent a color change,and SEM micrographs of the samples showed that an intricate pattern of fissures which were typically 3µm wide had evolved. Analysis by electron microprobe revealed that Au had segregated preferentially into the fissures. This result suggests that Ti-W is not a barrier to Au-Si intermixing at 400°C.

Utilização da transformada de características invariante a escala (SIFT) na automatização da obtenção de pontos do Sistema de Imagens Tridimensional Híbrido (SITH)

Esta dissertação apresenta um aperfeiçoamento para o Sistema de Imagens Tridimensional Híbrido (SITH) que é utilizado para obtenção de uma superfície tridimensional do relevo de uma determinada região a partir de dois aerofotogramas consecutivos da mesma. A fotogrametria é a ciência e tecnologia utilizada para obter informações confiáveis a partir de imagens adquiridas por sensores. O aperfeiçoamento do SITH consistirá na automatização da obtenção dos pontos através da técnica de Transformada de Características Invariantes a Escala (SIFT - Scale Invariant Feature Transform) dos pares de imagens estereoscópicas obtidos por câmeras aéreas métricas, e na utilização de técnicas de interpolação por splines cúbicos para suavização das superfícies tridimensionais obtidas pelo mesmo, proporcionando uma visualização mais clara dos detalhes da área estudada e auxiliando em prevenções contra deslizamentos em locais de risco a partir de um planejamento urbano adequado. Os resultados computacionais mostram que a incorporação destes métodos ao programa SITH apresentaram bons resultados.

Estimação de velocidade de composições usando processamento de vídeo

Esta dissertação tem como objetivo estudar um método para estimar a velocidade de veículos ferroviários usando processamento de vídeo. O sistema proposto consiste na utilização de câmeras ao longo das vias férreas que permitam não só o monitoramento do tráfego ferroviário, mas cujo vídeo captado possa ser utilizado para a obtenção de estimativas para a velocidade instantânea dos trens que por ela trafegam. Tal sistema seria utilizado independentemente dos sistemas de controle já utilizados pela operadora do sistema ferroviário, permitindo que os controladores possam ter uma segunda análise no caso de falha da primeira, assim como um modelo que permita avaliar a velocidade instantânea do veículo ferroviário ao longo do percurso. Os algoritmos de rastreamento empregados para esse fim abordaram diferentes métodos. Confrontaram-se os resultados obtidos com os algoritmos propostos com os dados empíricos de forma a determinar aquele com melhor resposta dada as características do sistema. O algoritmo que apresentou os melhores resultados emprega um único bloco de referência para todos os quadros comparados. A métrica de similaridade responsável por determinar quais blocos são mais ou menos similares dentro do universo de busca estipulado é a soma de diferenças absolutas (SAD, Sum of Absolute Differences). O tempo de processamento requerido por cada um dos métodos de rastreamento estudados também foi considerado nas avaliações de resultados apresentadas. Uma comparação realizada entre as velocidades coletadas e aquelas informadas pelo sistema de controle mostraram que os resultados obtidos com o sistema atual, utilizando a sinalização apenas por circuito de via apresenta resultados pouco confiáveis com erros bastante significativos. Os resultados obtidos com o sistema proposto apresentaram erros menores quando comparados àqueles obtidos pelo sistema vigente, apresentando-se assim como uma solução viável e de baixo custo quando comparada às técnicas atualmente empregadas para a medida de velocidade de trens.

Implementación hardware de un robot humanoide.

[ES]Este trabajo describe una serie de mejoras aplicables a un kit comercial de robot humanoide Robonova, con el fin de que este reproduzca el comportamiento cinemático del ser humano con mayor autonomía. Entre ellas destacan la implementación de sensores infrarrojos, sensores de posición, cámaras de visión y conexiones en serie de servomotores. Todo ello controlado desde un ordenador de placa reducida Raspberry Pi.

Tecnologia e materialidades da comunicação no documentário: atores humanos e não humanos na obra de Eduardo Coutinho

O cinema é uma expressão artística mediada pela tecnologia desde o seu surgimento no século XIX. A partir dessa constatação, investigam-se neste trabalho as relações entre tecnologia e documentário e de que forma elas impactam as linguagens midiáticas, tomando como aplicação a obra de Eduardo Coutinho - mais especificamente o uso do vídeo pelo cineasta. Para desenvolver este estudo, foi usado como referenciais teóricos a Teoria Ator-Rede e a Teoria das Materialidades da Comunicação, que têm em comum a análise de atores humanos (homem) e não humanos (técnica), além de permitir a justaposição de descrições histórica, biográfica, analítica e empírica a cerca do objeto do estudo. Essas análises mostram que há uma influência mútua e simultânea entre tecnologia e documentário, onde tecnologia influencia a linguagem documental, ao mesmo tempo em que o documentário, ao buscar novas maneiras de se expressar, acossa e afeta os aparatos técnicos, demandando aprimoramentos e transformações nos mesmos. No cinema documental, a tecnologia permitiu diversas contribuições estéticas que vinham sendo requeridas pela prática, como a necessidade de um cinema mais ágil e sonoro que foi viabilizado pelo advento de câmeras menores e do som direto. Esse encontro entre técnica e estética foi visto de perto na obra de Eduardo Coutinho.

Devir-câmera: A relação dos estudantes com os equipamentos de produção de imagens em movimento

Esta pesquisa tem como objetivo cartografar o devir câmera de um grupo de produção audiovisual para verificar de que forma as novas tecnologias de captura produzem uma transformação na relação com as imagens que poderá ser considerada como produção de uma nova subjetividade. Encaramos como devir câmera o resultado do acoplamento estudante/ câmera de vídeo em suas várias manifestações tecnológicas (handycams, câmeras de fotografia digitais, telefones celulares). Como nosso objeto de pesquisa é formado por alunos de ensino médio-técnico e de graduação, também pretendemos apontar possibilidades para a utilização do audiovisual na educação atuando na construção de novos territórios existenciais, no sentido de gerar processos de singularização através da educação pela arte. Nosso campo conceitual tomará consistência através do uso de autores como Gilles Deleuze, Felix Guattari, Michel Foucault; Kastrup, Escóssia, Benevides, Passos, Suely Rolnik; Michael Hardt, Toni Negri, Peter Pal Pelbart, Gilbert Simondon, McLuhan, Pierre Lévy; Jonathan Crary, Pierre Barboza, e Phillipe Dubois, além da bibliografia técnica/tecnológica da área.

Use of stereo camera systems for assessment of rockfish abundance in untrawlable areas and for recording pollock behavior during midwater trawls

We describe the application of two types of stereo camera systems in fisheries research, including the design, calibration, analysis techniques, and precision of the data obtained with these systems. The first is a stereo video system deployed by using a quick-responding winch with a live feed to provide species- and size- composition data adequate to produce acoustically based biomass estimates of rockfish. This system was tested on the eastern Bering Sea slope where rockfish were measured. Rockfish sizes were similar to those sampled with a bottom trawl and the relative error in multiple measurements of the same rockfish in multiple still-frame images was small. Measurement errors of up to 5.5% were found on a calibration target of known size. The second system consisted of a pair of still-image digital cameras mounted inside a midwater trawl. Processing of the stereo images allowed fish length, fish orientation in relation to the camera platform, and relative distance of the fish to the trawl netting to be determined. The video system was useful for surveying fish in Alaska, but it could also be used broadly in other situations where it is difficult to obtain species-composition or size-composition information. Likewise, the still-image system could be used for fisheries research to obtain data on size, position, and orientation of fish.

Measurements of total scattering spectra from bocaccio (Sebastes paucispinis)

Marine sportfishing in southern California is a huge industry with annual revenues totaling many billions of dollars. However, the stocks of lingcod and six rockfish species have been declared overfished by the Pacific Fisheries Management Council. As part of a multifaceted fisheries management plan, marine conservation areas, covering many million square nautical miles, have been mandated. To monitor the recovery of the rockfish stocks in these areas, scientists are faced with the following challenges: 1) multiple species of rockfish exist in these areas; 2) the species reside near or on the bottom at depths of 80 to 300 m; and 3) they are low in numerical density. To meet these challenges, multifrequency echosounders, multibeam sonar, and cameras mounted on remotely operated vehicles are frequently used (Reynolds et al., 2001). The accuracy and precision of these echosounder results are largely dependent upon the accuracy of the species classification and target strength estimation (MacLennan and Simmonds, 1992).

A Preliminary Study of the Marine Biota at Navassa Island, Caribbean Sea

A preliminary study of reef fish and sharks was conducted at Navassa Island in the Caribbean Sea during a 24-h period beginning 9 September 1998. Conducting a study at Navassa Island was of particular interest because exploitation of Navassa Island’s fishery resources has been considered minimal due to its remote location (southwest of the Windward Passage, Caribbean Sea) and lack of human habitation. Reef fish (and associated habitats) were assessed with stationary underwater video cameras at 3 survey sites; sharks were assessed by bottom longlining at 5 survey sites. Fifty-seven reef fish identifications to lowest possible taxon were made from video footage. Longline catches produced 3 shark species and 3 incidental catch species. When results from the 1998 National Marine Fisheries Service (NMFS) project are combined with a previous 1977 NMFS survey of Navassa Island, 27 fish families, 79 fish identifications to lowest possible taxon, 4 invertebrate orders or families, 3 coraline families, and 2 macroalgae phyla are reported.

Mapping reef fish and the seascape: using acoustics and spatial modeling to guide coastal management

Reef fish distributions are patchy in time and space with some coral reef habitats supporting higher densities (i.e., aggregations) of fish than others. Identifying and quantifying fish aggregations (particularly during spawning events) are often top priorities for coastal managers. However, the rapid mapping of these aggregations using conventional survey methods (e.g., non-technical SCUBA diving and remotely operated cameras) are limited by depth, visibility and time. Acoustic sensors (i.e., splitbeam and multibeam echosounders) are not constrained by these same limitations, and were used to concurrently map and quantify the location, density and size of reef fish along with seafloor structure in two, separate locations in the U.S. Virgin Islands. Reef fish aggregations were documented along the shelf edge, an ecologically important ecotone in the region. Fish were grouped into three classes according to body size, and relationships with the benthic seascape were modeled in one area using Boosted Regression Trees. These models were validated in a second area to test their predictive performance in locations where fish have not been mapped. Models predicting the density of large fish (≥29 cm) performed well (i.e., AUC = 0.77). Water depth and standard deviation of depth were the most influential predictors at two spatial scales (100 and 300 m). Models of small (≤11 cm) and medium (12–28 cm) fish performed poorly (i.e., AUC = 0.49 to 0.68) due to the high prevalence (45–79%) of smaller fish in both locations, and the unequal prevalence of smaller fish in the training and validation areas. Integrating acoustic sensors with spatial modeling offers a new and reliable approach to rapidly identify fish aggregations and to predict the density large fish in un-surveyed locations. This integrative approach will help coastal managers to prioritize sites, and focus their limited resources on areas that may be of higher conservation value.

An investigation of survey technologies and modeling techniques for improving deepwater surveys of nonindigenous species in the Northwestern Hawaiian Islands

Nonindigenous species (NIS) are a major threat to marine ecosystems, with possible dramatic effects on biodiversity, biological productivity, habitat structure and fisheries. The Papahānaumokuākea Marine National Monument (PMNM) has taken active steps to mitigate the threats of NIS in Northwestern Hawaiian Islands (NWHI). Of particular concern are the 13 NIS already detected in NWHI and two invasive species found among the main Hawaiian Islands, snowflake coral (Carijoa riseii) and a red alga (Hypnea musciformis). Much of the information regarding NIS in NWHI has been collected or informed by surveys using conventional SCUBA or fishing gear. These technologies have significant drawbacks. SCUBA is generally constrained to depths shallower than 40 m and several NIS of concern have been detected well below this limit (e.g., L. kasmira – 256 m) and fishing gear is highly selective. Consequently, not all habitats or species can be properly represented. Effective management of NIS requires knowledge of their spatial distribution and abundance over their entire range. Surveys which provide this requisite information can be expensive, especially in the marine environment and even more so in deepwater. Technologies which minimize costs, increase the probability of detection and are capable of satisfying multiple objectives simultaneously are desired. This report examines survey technologies, with a focus on towed camera systems (TCSs), and modeling techniques which can increase NIS detection and sampling efficiency in deepwater habitats of NWHI; thus filling a critical data gap in present datasets. A pilot study conducted in 2008 at French Frigate Shoals and Brooks Banks was used to investigate the application of TCSs for surveying NIS in habitats deeper than 40 m. Cost and data quality were assessed. Over 100 hours of video was collected, in which 124 sightings of NIS were made among benthic habitats from 20 to 250 m. Most sightings were of a single cosmopolitan species, Lutjanus kasmira, but Cephalopholis argus, and Lutjanus fulvus, were also detected. The data expand the spatial distributions of observed NIS into deepwater habitats, identify algal plain as an important habitat and complement existing data collected using SCUBA and fishing gear. The technology’s principal drawback was its inability to identify organisms of particular concern, such as Carijoa riseii and Hypnea musciformis due to inadequate camera resolution and inability to thoroughly inspect sites. To solve this issue we recommend incorporating high-resolution cameras into TCSs, or using alternative technologies, such as technical SCUBA diving or remotely operated vehicles, in place of TCSs. We compared several different survey technologies by cost and their ability to detect NIS and these results are summarized in Table 3.

Capture probability of a survey trawl for red king crab (Paralithodes camtschaticus)

The relative abundance of Bristol Bay red king crab (Paralithodes camtschaticus) is estimated each year for stock assessment by using catch-per-swept-area data collected on the Alaska Fisheries Science Center’s annual eastern Bering Sea bottom trawl survey. To estimate survey trawl capture efficiency for red king crab, an experiment was conducted with an auxiliary net (fitted with its own heavy chain-link footrope) that was attached beneath the trawl to capture crabs escaping under the survey trawl footrope. Capture probability was then estimated by fitting a model to the proportion of crabs captured and crab size data. For males, mean capture probability was 72% at 95 mm (carapace length), the size at which full vulnerability to the survey trawl is assigned in the current management model; 84.1% at 135 mm, the legal size for the fishery; and 93% at 184 mm, the maximum size observed in this study. For females, mean capture probability was 70% at 90 mm, the size at which full vulnerability to the survey trawl is assigned in the current management model, and 77% at 162 mm, the maximum size observed in this study. The precision of our estimates for each sex decreased for juveniles under 60 mm and for the largest crab because of small sample sizes. In situ data collected from trawl-mounted video cameras were used to determine the importance of various factors associated with the capture of individual crabs. Capture probability was significantly higher when a crab was standing when struck by the footrope, rather than crouching, and higher when a crab was hit along its body axis, rather than from the side. Capture probability also increased as a function of increasing crab size but decreased with increasing footrope distance from the bottom and when artificial light was provided for the video camera.

A procedure for automatically estimating model parameters in optical motion capture

Model-based optical motion capture systems require knowledge of the position of the markers relative to the underlying skeleton, the lengths of the skeleton's limbs, and which limb each marker is attached to. These model parameters are typically assumed and entered into the system manually, although techniques exist for calculating some of them, such as the position of the markers relative to the skeleton's joints. We present a fully automatic procedure for determining these model parameters. It tracks the 2D positions of the markers on the cameras' image planes and determines which markers lie on each limb before calculating the position of the underlying skeleton. The only assumption is that the skeleton consists of rigid limbs connected with ball joints. The proposed system is demonstrated on a number of real data examples and is shown to calculate good estimates of the model parameters in each. © 2004 Elsevier B.V. All rights reserved.

A closely integrated digital image capture device for embedded applications

A modular image capture system with close integration to CCD cameras has been developed. The aim is to produce a system capable of integrating CCD sensor, image capture and image processing into a single compact unit. This close integration provides a direct mapping between CCD pixels and digital image pixels. The system has been interfaced to a digital signal processor board for the development and control of image processing tasks. These have included characterization and enhancement of noisy images from an intensified camera and measurement to subpixel resolutions. A highly compact form of the image capture system is in an advanced stage of development. This consists of a single FPGA device and a single VRAM providing a two chip image capturing system capable of being integrated into a CCD camera. A miniature compact PC has been developed using a novel modular interconnection technique, providing a processing unit in a three dimensional format highly suited to integration into a CCD camera unit. Work is under way to interface the compact capture system to the PC using this interconnection technique, combining CCD sensor, image capture and image processing into a single compact unit. ©2005 Copyright SPIE - The International Society for Optical Engineering.