Cooccurrence of predominant Panton-Valentine leukocidin-positive sequence type (ST) 152 and multidrug-resistant ST 241 Staphylococcus aureus clones in Nigerian hospitals.

Ninety-six clinical isolates of Staphylococcus aureus from Nigeria were characterized phenotypically and genetically. Twelve multidrug-resistant methicillin (meticillin)-resistant S. aureus (MRSA) isolates carrying a new staphylococcal cassette chromosome mec element and a high proportion of Panton-Valentine leukocidin (PVL)-positive methicillin-susceptible S. aureus (MSSA) isolates were observed. The cooccurrence of multidrug-resistant MRSA and PVL-positive MSSA isolates entails the risk of emergence of a multidrug-resistant PVL-positive MRSA clone.

Seleção de clones de batata para processamento industrial em condições de clima subtropical e temperado

O objetivo deste trabalho foi selecionar clones de batata para processamento industrial, cultivados em condições de clima subtropical e temperado do Sul do Brasil. Foram avaliados 30 clones avançados e três cultivares (testemunhas), na primavera de 2007 e 2008, e no outono de 2008, em Júlio de Castilhos, RS (condição de clima subtropical), e no verão de 2008 e 2009, em São Joaquim, SC (condição de clima temperado). Utilizou-se o delineamento experimental de blocos ao acaso, em arranjo fatorial (33 clones em 5 ambientes), com duas ou três repetições de dez covas. Foram avaliados: a produção por cova, a aparência, a cor de chips e os teores de matéria seca e de açúcares redutores dos tubérculos. Houve interação significativa entre clones e ambientes para todas as características avaliadas, exceto quanto à cor de chips. A produção por cova e o teor de matéria seca dos tubérculos foram maiores no cultivo de verão. As condições ambientais de cultivo afetaram todos os caracteres avaliados. As condições de cultivo do Sul do Brasil possibilitam a seleção de clones de batata, com suficiente teor de matéria seca, para atender às exigências da indústria de processamento de batata.

Differential gene expression in the pathogenic dermatophyte Arthroderma benhamiae in vitro versus during infection.

Although dermatophytes are the most common agents of superficial mycoses in humans and animals, the molecular basis of the pathogenicity of these fungi is largely unknown. In vitro digestion of keratin by dermatophytes is associated with the secretion of multiple proteases, which are assumed to be responsible for their particular specialization to colonize and degrade keratinized host structures during infection. To investigate the role of individual secreted proteases in dermatophytosis, a guinea pig infection model was established for the zoophilic dermatophyte Arthroderma benhamiae, which causes highly inflammatory cutaneous infections in humans and rodents. By use of a cDNA microarray covering approximately 20-25 % of the A. benhamiae genome and containing sequences of at least 23 protease genes, we revealed a distinct in vivo protease gene expression profile in the fungal cells, which was surprisingly different from the pattern elicited during in vitro growth on keratin. Instead of the major in vitro -expressed proteases, others were activated specifically during infection. These enzymes are therefore suggested to fulfil important functions that are not exclusively associated with the degradation of keratin. Most notably, the gene encoding the serine protease subtilisin 6, which is a known major allergen in the related dermatophyte Trichophyton rubrum and putatively linked to host inflammation, was found to be the most strongly upregulated gene during infection. In addition, our approach identified other candidate pathogenicity-related factors in A. benhamiae, such as genes encoding key enzymes of the glyoxylate cycle and an opsin-related protein. Our work provides what we believe to be the first broad-scale gene expression profile in human pathogenic dermatophytes during infection, and points to putative virulence-associated mechanisms that make these micro-organisms the most successful aetiological agents of superficial mycoses.

Assessment of growth and yield performance of rubber tree clones of the IAC 500 series

The objective of this work was to evaluate the performance of 15 clones of the IAC 500 series of Hevea brasiliensis, developed at Instituto Agronômico (IAC), over a 12-year period, in the northwest region of São Paulo State, Brazil. The 15 new clones evaluated are primary clones obtained from selected ortets within half-sib progenies. The clone RRIM 600, of Malaysian origin, was used as the control. Dry rubber yield performance over a four-year period, mean girth at the tenth year, girth increment before and during tapping, thermal properties of the natural rubber produced and other characters of the laticiferous system were evaluated. Forty percent of the clones were superior in comparison to the control for yield. Clone IAC 500 recorded the highest yield (66.81 g per tree per tapping) over four years of tapping, followed by IAC 502 (62.37 g per tree per tapping), whereas the control recorded 48.71 g per tree per tapping. All selected clones were vigorous in growth. The natural rubber from this IAC clones showed thermal stability up to 300ºC. No differences were observed in the thermal behavior of rubber among the IAC series and the RRIM 600 clones. The clones IAC 500, IAC 501, IAC 502, IAC 503 and IAC 506 are the more promising for small-scale plantations, due to growth and yield potential.

Desempenho silvicultural e seleção precoce de clones de híbridos de eucalipto

O objetivo deste trabalho foi avaliar a variabilidade genética e o desempenho silvicultural de clones de híbridos interespecíficos de Eucalyptus urophylla, E. globulus, E. maidenii, E. saligna, E. grandis, E. pellita, E. resinifera, E. kirtoniana e E. dunnii, e determinar a viabilidade da seleção precoce em selecionar clones superiores. Os diâmetros do tronco à altura do peito aos três (DAP3) e sete (DAP7) anos de idade e a altura total das árvores aos sete anos de idade foram mensurados. Utilizou-se o delineamento experimental de blocos ao acaso, com 138 clones, 10 repetições e seis plantas por parcela. Os dados foram submetidos à análise de variância e agrupados pelo método das k-médias, tendo-se realizado a comparação de médias e determinado a correlação de Pearson (r) entre as variáveis avaliadas. A validação do agrupamento foi realizada por meio de análise de variância e do teste de Tukey. Os clones de híbridos interespecíficos de Eucalyptus apresentaram variabilidade genética. Foram estabelecidos cinco grupos de clones com base no desempenho silvicultural (DAP3, DAP7 e altura). O DAP3 é altamente correlacionado ao DAP7 e à altura aos sete anos de idade. A seleção com base no DAP3 pode ser utilizada para identificar clones superiores de Eucalyptus com grande vigor de crescimento.

Translocation of cyanogenic glycosides in rubber tree crown clones resistant to South American leaf blight

The objective of this work was to assess the possible transport of cyanogenic glycosides from leaves of rubber tree crown clones (Hevea spp.) resistant to South American leaf blight to the trunk of the panel clones in which they are grafted. The cyanogenic potential (HCNp) of the crown clones was determined in the trunk bark, at different distances from the cambium, and its gradient was evaluated along the trunk. The correlation between the HCNp of the crown leaves and that of the trunk bark was also evaluated. HCNp determined in leaves showed a wide range variation in the species studied as crown clones, with the lowest values registered in H. nitida clones, and the highest ones in H. rigidifolia. In the trunk bark, the tissue layer nearer the cambium showed higher HCNp values. A positive basipetal gradient was observed along the trunk, i.e., there was an increase in HCNp from the apex toward the base. Although the grafted crowns influence the cyanogenic potential of the trunk bark of panel clones, the absence of correlation between the HCNp of the leaves and trunk bark indicates that the crown is not the main source of the cyanogenic glycosides found in the trunk.

Seleção simultânea de clones de eucalipto de acordo com produtividade, estabilidade e adaptabilidade

O objetivo deste trabalho foi estimar os parâmetros genéticos e determinar a eficiência da seleção simultânea de clones de eucalipto baseada em produtividade, estabilidade e adaptabilidade. Foram utilizados 21 clones, com 36 meses de idade, pertencentes ao programa de melhoramento genético da empresa Cenibra. O experimento foi instalado em delineamento de blocos ao acaso, em quatro ambientes, com 21 repetições de uma planta por parcela. Os clones foram avaliados quanto às variáveis: diâmetro à altura do peito, altura da planta e volume total com casca. Os parâmetros genéticos foram estimados pela metodologia de modelos mistos (REML/BLUP), e a seleção baseou-se no método da média harmônica do desempenho relativo dos valores genéticos (MHPRVG), em três estratégias: seleção com base no valor genético predito, tendo-se considerado o desempenho médio dos genótipos em todos os ambientes (sem efeito de interação) ou o desempenho em cada ambiente (com efeito da interação); e seleção simultânea quanto à produção, estabilidade e adaptabilidade. As particularidades dos ambientes influenciaram a expressão fenotípica dos clones. As estimativas de herdabilidade indicaram boas perspectivas para a seleção de clones com alta produtividade, estabilidade e adaptabilidade. A seleção simultânea otimiza a seleção de clones e pode ser usada na construção de populações de melhoramento e na recomendação de materiais genéticos para plantios comerciais.

Producción y propiedades químicas del caucho en clones de Hevea según los estados fenológicos

El objetivo de este trabajo fue evaluar el desempeño productivo y el contenido de macronutrientes del caucho extraído de cuatro clones de Hevea brasiliensis, en diferentes sistemas de sangría y estados fenológicos de las plantas. El experimento fue realizado en los años agrícolas de 2010 y 2011, en diseño experimental de bloques completos al azar, en parcelas subdivididas, con cuatro repeticiones. Los tratamientos principales - clones GT 1, PB 235, IAN 873 e RRIM 600 - fueron ubicados en las parcelas, y los subtratamientos, que fueron los sistemas de sangría ½S d/2, ½S d/4 ET 2,5% y ½S d/7 ET 2,5%, se ubicaron en las subparcelas. Las variables analizadas fueron producción y contenido de macronutrientes. Las muestras fueron obtenidas en los estados fenológicos de brotación foliar, hojas maduras y senescencia foliar. La producción y los contenidos de macronutrientes del caucho son más influenciados por la práctica de sangría que por el material genético en los estados fenológicos más restrictivos para el follaje de caucho.

Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis

Invasive candidiasis is the most commonly reported invasive fungal infection worldwide. Although Candida albicans remains the main cause, the incidence of emerging Candida species, such as C. parapsilosis is increasing. It has been postulated that C. parapsilosis clinical isolates result from a recent global expansion of a virulent clone. However, the availability of a single genome for this species has so far prevented testing this hypothesis at genomic scales. We present here the sequence of three additional strains from clinical and environmental samples. Our analyses reveal unexpected patterns of genomic variation, shared among distant strains, that argue against the clonal expansion hypothesis. All strains carry independent expansions involving an arsenite transporter homolog, pointing to the existence of directional selection in the environment, and independent origins of the two clinical isolates. Furthermore, we report the first evidence for the existence of recombination in this species. Altogether, our results shed new light onto the dynamics of genome evolution in C. parapsilosis.

Desempenho de clones de copa e painel de seringueira no sudoeste do Estado do Mato Grosso

O objetivo deste trabalho foi avaliar o desempenho de 12 combinações de três clones de painel (PB 311, PB 314 e RRIM 600) com quatro clones de copa (F 4512, MDF 180, IAN 6158 e IAN 6543) de seringueira cultivados no sudoeste do Estado do Mato Grosso. Utilizou-se o delineamento experimental de blocos ao acaso, com quatro repetições. Foram avaliados: produção de borracha seca, percentagem de plantas aptas à sangria, secamento de painel, estado nutricional, teor de borracha seca, plasticidade Wallace (P0 e P30), índice de retenção de plasticidade e viscosidade Mooney. As combinações das copas IAN 6543 e MDF 180 com os painéis PB 311, RRIM 600 e PB 314 apresentaram estado nutricional adequado, com produtividade de borracha seca acima de 1,41 Mg ha-1 por ano. O clone de copa IAN 6158 propiciou, em oito anos, as maiores quantidades de plantas aptas à sangria. As combinações painel/copa apresentaram baixa incidência de secamento de painel, exceto PB 311 x IAN 6158. As borrachas das 12 combinações painel/copa apresentam boa resistência à degradação térmica e alta retenção de plasticidade.

Análise multivariada para seleção de clones de eucalipto destinados à produção de carvão vegetal

O objetivo deste trabalho foi avaliar a qualidade da madeira de clones de Eucalyptus spp. destinados à produção de carvão vegetal, estudar correlações entre propriedades da madeira e do carvão e identificar os clones com maior potencial para uso energético. Os dados de clones de 18 povoamentos, no Cerrado mineiro, foram submetidos às análises multivariada de correlação canônica; de componentes principais; e de agrupamento. As propriedades do carvão vegetal são fortemente correlacionadas às da madeira, principalmente a densidade aparente do carvão vegetal e o rendimento gravimétrico. Os materiais mais velhos e de maior densidade básica da madeira apresentam maior qualidade para uso energético. A análise de componentes principais é eficiente para ranquear os materiais quanto à qualidade da madeira, e o método de agrupamento é capaz de estratificar com sucesso os clones pela qualidade da madeira.

Field performance of hybrid aspen clones planted in summer

[Abstract]

Identification and characterization of pathogenic Pestalotiopsis species to pecan tree in Brazil

The objective of this work was to characterize and cluster isolates of Pestalotiopsis species and to identify those that are pathogenic to pecan, based on morphological and molecular characters. Pestalotiopsis spp. isolates were identified by sequencing the internal transcribed spacer (ITS) and β?tubulin regions. Identification methods were compared to indicate the key morphological characters for species characterization. Thirteen isolates were used for the pathogenicity tests. Morphological characterization was performed using the following variables: mycelial growth rate, sporulation, colony pigmentation, and conidial length and width. Ten pathogenic isolates were identified, three as -tubulin regions. Identification methods were compared to indicate the key morphological characters for species characterization. Thirteen isolates were used for the pathogenicity tests. Morphological characterization was performed using the following variables: mycelial growth rate, sporulation, colony pigmentation, and conidial length and width. Ten pathogenic isolates were identified, three as Pestalotiopsis clavispora and three as P. cocculi. The other isolates remained as an undefined species. The morphological characters were efficient for an initial separation of the isolates, which were grouped according to differences at species level, mainly colony diameter, which was identified as an important morphological describer. Beta-tubulin gene sequencing was less informative than the ITS region sequencing for species identification.

Soil water dynamics and evapotranspiration of forage cactus clones under rainfed conditions

Abstract: The objective of this work was to evaluate soil water dynamics in areas cultivated with forage cactus clones and to determine how environmental conditions and crop growth affect evapotranspiration. The study was conducted in the municipality of Serra Talhada, in the state of Pernambuco, Brazil. Crop growth was monitored through changes in the cladode area index (CAI) and through the soil cover fraction, calculated at the end of the cycle. Real evapotranspiration (ET) of the three evaluated clones was obtained as the residual term in the soil water balance method. No difference was observed between soil water balance components, even though the evaluated clones were of different genus and had different CAI increments. Accumulated ET was of 1,173 mm during the 499 days of the experiment, resulting in daily average of 2.35 mm. The CAI increases the water consumption of the Orelha de Elefante Mexicana clone. In dry conditions, the water consumption of the Miúda clone responds more slowly to variation in soil water availability. The lower evolution of the CAI of the IPA Sertânia clone, during the rainy season, leads to a higher contribution of the evaporation component in ET. The atmospheric demand controls the ET of clones only when there is higher soil water availability; in this condition, the water consumption of the Miúda clone decreases more rapidly with the increase of atmospheric demand.

Methicillin-resistant Staphylococcus aureus: phylogenetic relatedness between European epidemic clones and Swiss sporadic strains.

We have compared the phylogenetic diversity of methicillin-resistant Staphylococcus aureus (MRSA) strains from Switzerland and their phylogenetic relationships with European epidemic clones, using multiprimer random amplification polymorphic DNA (RAPD). Strains included 24 European epidemic clones (59 strains), 66 sporadic strains isolated in Switzerland in 1996-1997, and 15 reference strains of five other Staphylococcus species. Similarity and clustering analysis with the Jaccard's coefficient showed that the maximum genetic distance between MRSA strains was 0.43, whereas the minimum genetic distance between the six Staphylococcus species was 0.97, indicating that the method permits phylogenetic hierarchization. The 24 MRSA clones reported to be epidemic in European countries during the 1990s were distributed into seven different genetic clusters with a maximum distance of 0.29 among them. This clustering pattern was confirmed by the analysis of a subset of MRSA strains by multilocus enzyme electrophoresis at 12 loci. Most of the sporadic Swiss strains were distributed into these seven different genetic clusters, together with the epidemic MRSA clones. This suggests that there is no phylogenetic cluster specific to epidemic clones of MRSA.