Three-dimensional visualization of human hemoglobin phenotypes with HPLC

Hemoglobinopathies were included in the Brazilian Neonatal Screening Program on June 6, 2001. Automated high-performance liquid chromatography (HPLC) was indicated as one of the diagnostic methods. The amount of information generated by these systems is immense, and the behavior of groups cannot always be observed in individual analyses. Three-dimensional (3-D) visualization techniques can be applied to extract this information, for extracting patterns, trends or relations from the results stored in databases. We applied the 3-D visualization tool to analyze patterns in the results of hemoglobinopathy based on neonatal diagnosis by HPLC. The laboratory results of 2520 newborn analyses carried out in 2001 and 2002 were used. The Fast, F1, F and A peaks, which were detected by the analytical system, were chosen as attributes for mapping. To establish a behavior pattern, the results were classified into groups according to hemoglobin phenotype: normal (N = 2169), variant (N = 73) and thalassemia (N = 279). 3-D visualization was made with the FastMap DB tool; there were two distribution patterns in the normal group, due to variation in the amplitude of the values obtained by HPLC for the F1 window. It allowed separation of the samples with normal Hb from those with alpha thalassemia, based on a significant difference (P > 0.05) between the mean values of the Fast and A peaks, demonstrating the need for better evaluation of chromatograms; this method could be used to help diagnose alpha thalassemia in newborns.

Litogeoquímica E aspectos Petrogenéticos dos basaltos da Província Magmática do Paraná na porção centro-norte do Estado de São Paulo

The petrographic and geochemical characterization of flood basalts of Serra Geral Formation are here presented. The investigated areas are situated in four different regions of São Paulo state: Jaú, Ribeirão Preto, Franca and Fernandópolis. They represent almost the total area of outcrops of basalts in the São Paulo State. The petrographical data reveals that these rocks are constituted mainly by plagioclase (30-40%), pyroxenes, augite and pigeonita (20-30%) and magnetite (5-15%), and show a intergranular texture and its varieties intersertal, hialophitic and pilotaxitic. The geochemical data show a basic and tholeiitic affinity of the studied basalts, with high-Ti content (TiO2 > 1.8%), typical of the northern region of Paraná Basin. Three different magma-types were recognized: Paranapanema, Urubici and Pitanga. The first magma-type is concentrated in the Fernandópolis region, the second in the Franca region, and the Pitanga occurs in the Ribeirão Preto and Jaú regions. The distribution patterns of these magma-types and the detailed study of geochemical data showed that they are, probably, generated by a melting of a continental lithospheric mantle.

Mapping five repetitive DNA classes in sympatric species of Hypostomus (Teleostei: Siluriformes: Loricariidae): analysis of chromosomal variability

Fish belonging to the genus Hypostomus are known for exhibiting a striking diversity in its karyotype structure, however the knowledge concerning the distribution patterns of heterochromatin and location of repetitive DNA sequences in the karyotypes is still limited. Aiming a better understanding of the chromosomal organization in this group, we analyzed three sympatric species of Hypostomus collected in the Hortelã stream, a component of the Paranapanema River basin, Botucatu/SP/Brazil. The analyses involved the cytogenetic characterization and chromosomal mapping of repetitive sequences and intra/interspecific comparisons using sequences of the cytochrome C oxidase subunit I. The results revealed that H. ancistroides presents a karyotype with 2n = 68 chromosomes, H. strigaticeps 2n = 72 chromosomes, and H. nigromaculatus 2n = 76 chromosomes. In addition to differences found in the diploid number, it was also observed variations in karyotypic formulae, amount of constitutive heterochromatin, and location of nucleolus organizer regions. The cytogenetic mapping of 5S and 18S rDNA, as well as of the H3 histone gene, disclosed a differential dispersion process among the three species. In some cases the Rex1 transposable element showed to be co-located with 5S rDNA sites. The molecular analyses support the cytogenetic data and represent an additional tool for the characterization of the analyzed species. The results evidenced that chromosomal variations are not restricted to differences in diploid number or karyotypic macrostructure in the genus Hypostomus, indicating that events such as transposition of heterochromatin and rDNA segments may participate in the differentiation process occurred in these species. © 2013 Springer Science+Business Media Dordrecht.

Instantaneously measured traits may detect non-plastic ecophysiological performances in response to drought, explaining distributions of Styrax species in the Cerrado

We analyzed the differences between irrigated and non-irrigated plants of three congeneric Styrax species that present distinct distribution patterns in the physiognomies of the Cerrado vegetation in Brazil. Styrax ferrugineus showed a stomatal conductance (gs) unresponsive to soil water deficit in potted plants. This may explain the high gas exchange and photochemical efficiency found in this species, which is well adapted to the Cerrado sensu stricto (s. str.), a savanna-type vegetation. S. camporum, which is widely distributed in the Cerrado sensu lato (s. l.) areas, was the only species that exhibited increased intrinsic water use efficiency on the days of maximum water deficit. This result distinguishes S. camporum from S. pohlii, which is a forest species, since the gs of both species decreased during the days of maximum water stress. In contrast to other studies, we propose that instantaneously measured traits, such as leaf gas exchange rates and chlorophyll fluorescence, may be used to detect non-plastic performances in response to environmental stress, helping explain distinct geographical distributions of congeneric species in the Cerrado vegetation. © 2013 Springer-Verlag Berlin Heidelberg.

Karyotypic conservatism in five species of Prochilodus (Characiformes, Prochilodontidae) disclosed by cytogenetic markers

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

The functional biogeography of species: Biogeographical species roles of birds in Wallacea and the West Indies

Biogeographical systems can be analyzed as networks of species and geographical units. Within such a biogeographical network, individual species may differ fundamentally in their linkage pattern, and therefore hold different topological roles. To advance our understanding of the relationship between species traits and large-scale species distribution patterns in archipelagos, we use a network approach to classify birds as one of four biogeographical species roles: peripherals, connectors, module hubs, and network hubs. These roles are based upon the position of species within the modular network of islands and species in Wallacea and the West Indies. We test whether species traits - including habitat requirements, altitudinal range-span, feeding guild, trophic level, and body length - correlate with species roles. In both archipelagos, habitat requirements, altitudinal range-span and body length show strong relations to species roles. In particular, species that occupy coastal- and open habitats, as well as habitat generalists, show higher proportions of connectors and network hubs and thus tend to span several biogeographical modules (i.e. subregions). Likewise, large body size and a wide altitudinal range-span are related to a wide distribution on many islands and across several biogeographical modules. On the other hand, species restricted to interior forest are mainly characterized as peripherals and, thus, have narrow and localized distributions within biogeographical modules rather than across the archipelago-wide network. These results suggest that the ecological amplitude of a species is highly related to its geographical distribution within and across bio geographical subregions and furthermore supports the idea that large-scale species distributions relate to distributions at the local community level. We finally discuss how our biogeographical species roles may correspond to the stages of the taxon cycle and other prominent theories of species assembly. © 2013 The Authors.

Anurofauna em uma área de ecótono entre Cerrado e Floresta Estacional: diversidade, distribuição e a influência de características ambientais

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Influência de componentes locais e da paisagem na estrutura de uma metacomunidade de anfíbios anuros em uma paisagem fragmentada na Região Neotropical

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Determinação de ácido abscísico e respostas metabólicas em espécies congenéricas de savana e mata do cerrado paulista

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

A formação Serra Geral na porção centro-norte do estado de São Paulo

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Parasitóides, bruquídeos e plantas hospedeiras: riqueza de espécies e dinâmica espacial em escala local

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Modelagem de nicho ecológico de anuros da Mata Atlântica

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Serpentes da Caatinga: diversidade, história natural, biogeografia e conservação

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estudos taxonômicos no gênero Blechnum L. (Pterophyta : blechnaceae) para as regiões sudeste e sul do Brasil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Estudo da vegetação dos campos úmidos de cerrado: aspectos florísticos e ecológicos

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)