CD80 and CD86 polymorphisms in populations of various ancestries: 5 new CD80 promoter alleles

CD80 and CD86 are closely linked genes on chromosome 3 that code for glycoproteins of the immunoglobulin superfamily, expressed on the surface of antigen-presenting cells. These costimulatory molecules play essential roles for stimulation and inhibition of T cells through binding to CD28 and CTLA-4 receptors. In this study, CD80 promoter and CD86 exon 8 polymorphisms were analyzed to investigate the genetic diversity and microevolution of the 2 genes. We genotyped 1,124 individuals, including Brazilians of predominantly European, mixed African and European, and Japanese ancestry, 5 Amerindian populations, and an African sample. All variants were observed in Africans, which suggests their origin in Africa before the human migrations out of that continent. Five new CD80 promoter alleles were identified and confirmed by cloning and sequencing, and promoter 2 is most likely the ancestral allele. Nucleotide -79 is monomorphic in 4 Amerindian populations, where the presence of the -79 G allele is probably the result of gene flow from non-Amerindians. (C) 2012 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.

Novel properties of melanins include promotion of DNA strand breaks, impairment of repair, and reduced ability to damage DNA after quenching of singlet oxygen

Melanins have been associated with the development of melanoma and its resistance to photodynamic therapy (PDT). Singlet molecular oxygen (102), which is produced by ultraviolet A solar radiation and the PDT system, is also involved. Here, we investigated the effects that these factors have on DNA damage and repair. Our results show that both types of melanin (eumelanin and pheomelanin) lead to DNA breakage in the absence of light irradiation and that eumelanin is more harmful than pheomelanin. Interestingly, melanins were found to bind to the minor grooves of DNA, guaranteeing close proximity to DNA and potentially causing the observed high levels of strand breaks. We also show that the interaction of melanins with DNA can impair the access of repair enzymes to lesions, contributing to the perpetuation of DNA damage. Moreover, we found that after melanins interact with 102, they exhibit a lower ability to induce DNA breakage; we propose that these effects are due to modifications of their structure. Together, our data highlight the different modes of action of the two types of melanin. Our results may have profound implications for cellular redox homeostasis, under conditions of induced melanin synthesis and irradiation with solar light. These results may also be applied to the development of protocols to sensitize melanoma cells to PDT. (c) 2012 Elsevier Inc. All rights reserved.

Paracoccidioides brasiliensis infection in dogs from Western Brazilian Amazon

The objective of the study was to evaluate Paracoccidioides brasiliensis infection in urban dogs from the municipality of Monte Negro, Rondonia, Western Brazilian Amazon. The serum samples (n=126) were analyzed by indirect ELISA and the immunodiffusion test using P. brasiliensis gp43 and exoantigen as antigens, respectively. A positivity of 54.8% was observed only in the ELISA test and no statistical difference was observed in the seroprevalence in relation to age or sex. This is the first paracoccidioidomycosis survey carried out with dogs from the Western Brazilian Amazon. The higher positivity rates of P. brasiliensis infection observed in this study suggest that veterinarians must be alert to detect new cases of natural disease in dogs living in paracoccidioidomycosis endemic areas.

Upper Pleistocene to Holocene peatland evolution in Southern Brazilian highlands as depicted by radar stratigraphy, sedimentology and palynology

Paleoenvironmental interpretation of proxy data derived from peatlands is largely based upon an evolutionary model for ombrotrophic bogs, in which peat accumulates in still environments. Reports on proxies obtained from minerotrophic fens, where hydrologic inputs are variable, are less common. In this study, a highland peatland in southern Brazil is presented through ground penetrating radar (GPR) and sedimentological, palynological and geochronologic data. The radar stratigraphic interpretation suggests a relatively complex history of erosion and deposition at the site since the beginning of Marine Isotope Stage 3 (MIS 3) interstadial period. In spite of this, radar stratigraphic and palynologic interpretations converge. Electromagnetic reflections tend to group in clusters that show lateral coherence and correlate with different sediment types, while pollen grains abound and are well preserved. As a result, the study of minerotrophic fens provides a source of proxies. suggesting that ombrotrophic bogs are not the only reliable source of data in wetlands for palynological analysis. (C) 2012 University of Washington. Published by Elsevier Inc. All rights reserved.

Adsorption of caffeic acid on titanium dioxide: A spectroscopic study

Caffeic acid is an ortho-phenol found in vegetable tissues presenting important properties such as carcinogenesis inhibitor, anti-oxidant, anti-viral, anti-inflammatory and anti-rheumatic actions. It was observed that caffeic acid was not degraded in daylight during the adsorption on TiO2 at pH 4.8. The adsorption fit very well to a Brunauer-Emmett-Teller isotherm equation with a monolayer coverage of 68.15 mg(CA) g(TiO2)(-1) and saturation coverage of 195.4 mg(CA) g(TiO2)(-1). A strong adsorption of caffeic acid was verified on TiO2 for the dry solid obtained from the mixture. The Raman and IR spectroscopies revealed that the adsorption should occur through the interaction of the diphenol oxygens with contribution of CC double bond of the acrylic group, however, the carboxylic acid group did not have participation in the adsorption. (C) 2012 Elsevier B.V. All rights reserved.

Estrutura e aspectos da regeneração natural de Floresta Ombrófila Mista no Parque Estadual de Campos do Jordão, SP, Brasil

O estudo buscou avaliar diferenças florísticas e estruturais entre os componentes adulto e regenerante de trecho de Floresta Ombrófila Mista em Campos do Jordão, a fim de levantar hipóteses sobre sua trajetória sucessional. Para amostragem do componente adulto (CAP > 15 cm) foram instaladas 50 parcelas permanentes de 10 × 20 m e, em cada uma dessas, cinco subparcelas de 1 × 1 m para amostragem do componente regenerante (h > 30 cm e CAP < 15 cm). No componente adulto foram amostrados 1.770 indivíduos, distribuídos em 58 espécies, 38 gêneros e 26 famílias (H' = 3,08 e J = 0,73). Já entre os regenerantes foram observados 576 indivíduos, 55 espécies, 39 gêneros e 23 famílias (H' = 3,41 e J = 0,84). Constatou-se que são necessárias ações de manejo para a conservação in situ das coníferas locais.

3D-Elektronenmikroskopie dreier respiratorischer Proteine unter Verbesserung der bioinformatischen Abläufe

Die Transmissionselektronenmikroskopie gepaart mit bioinformatischen Methoden zur digitalen Bildverarbeitung ist ein schneller Weg zur Erstellung dreidimensionaler Rekonstruktionen großer Proteinkomplexe. Durch die Kombination der 3D-Elektronenmikroskopie mit der Röntgenstruktur von Untereinheiten erhält man ein pseudoatomares Modell der Quartärstruktur.rnIn dieser Arbeit wurden auf diese Weise die Quartärstrukturen von drei unterschiedlichen respiratorischen Proteinen analysiert (einem Hämoglobin und zwei Hämocyaninen). Zudem wurden spezielle Software-Tools entwickelt, um vorhandene Softwarepakete besser miteinander kombinieren zu können.rnDie ca. 15Å 3D-Rekonstruktion des Hämoglobins vom Wasserfloh Daphnia pulex klärt die umstrittene Frage, wie viele Untereinheiten die Quartärstruktur aufbauen: Es sind 16 (mit je zwei Häm-Domänen), angeordnet in zwei Schichten als D4-symmetrisches Sandwich. Die ca. 15 Å 3D-Rekonstruktion des 2x6meren Hämocyanins des Flusskrebses Astacus leptodactylus gibt neue Einblicke in die Kontaktstelle zwischen den beiden Hexameren; sie liegt im Bereich der Domäne 3. Bei dem aus 48 Untereinheiten bestehenden Hämocyanin des Pfeilschwanzes Limulus polyphemus wurde eine Auflösung von ca. 7 Å erreicht. Die Homologiemodelle der Untereinheiten wurden flexibel gefittet. An einer der Kontaktstellen zwischen den beiden Halbmolekülen wurden Molekulardynamik (MD)-Simulationen durchgeführt, um mehr über die Art der chemischen Bindung an dieser Kontaktstelle zu erfahren.rnSpeziell für die Kombination von 3D-Elektronenmikroskopie und MD-Simulation wurden verschiedene bioinformatische Werkzeuge und eine leicht zu erweiternde universelle grafische Benutzeroberfläche (GUI) entwickelt.

Los árboles y arbustos indígenas cultivados como ornamentales en la ciudad de Mendoza y alrededores

En el presente trabajo los autores pasan en revista treinta y cuatro representantes indígenas de la Flora Argentina cultivados como ornamentales en la ciudad de Mendoza y alrededores, señalando su ubicación en parques, plazas, calles y paseos y aportando datos sobre fuste, floración, fructificación y viabilidad de sus semillas en base a observaciones directas de muchos años y a materiales de herbario, reunidos al efecto.

Early - Late Miocene palaeoclimate data and palaefloras of 48 samples from Southern China

Southern China, especially Yunnan, has undergone high tectonic activity caused by the uplift of Himalayan Mountains during the Neogene, which led to a fast changing palaeogeography. Previous study shows that Southern China has been influenced by the Asian Monsoon since at least the Early Miocene. However, it is yet not well understood how intense the Miocene monsoon system was. In the present study, 63 fossil floras of 16 localities from Southern China are compiled and evaluated for obtaining available information concerning floristic composition, stratigraphic age, sedimentology, etc. Based on such reliable information, selected mega- and micro-floras have been analysed with the coexistence approach to obtain quantitative palaeoclimate data. Visualization of climate results in maps shows a distinct spatial differentiation in Southern China during the Miocene. Higher seasonalities of temperature and precipitation occur in the north and south parts of Southern China, respectively. During the Miocene, most regions of Southern China and Europe were both warm and humid. Central Eurasia was likely to be an arid center, which gradually spread westward and eastward. Our data provide information about Miocene climate patterns in Southern China and about the evolution of these patterns throughout the Miocene, and is also crucial to unravel and understand the climatic signals of global cooling and tectonic uplift.

Effective acoustical monitoring tools for Mannophryne lamarcai

We performed the field-work during the dry (March 2014) and reainy season (May and June 2014) at the species type locality: Cerro Socopó, located at central-west region between Falcón, Lara and Zulia states, Venezuela. Socopó is a small and isolated mountain (1.571 m) belonging to the Ziruma mountains, and represents a relict of tropical mountain forest surrounded by semi-arid vegetation and grassland. This area is home to 312 species of vertebrates, including endangered and endemic amphibians species like Mannophryne lamarcai, Leptodactylus magistris and Dendropsophus amicorum. These forest and species are severely threatened by cattle ranch and illegal timber extraction, with forest formations only above 1000 meters. Despite this, no legal protected figure has been established in the area. We identified a 2.5 km secondary road transect within the study area based on the following criteria: 1) it cover different habitat types (streams and lagoons); and 2) it within the altitudinal gradient described for the specie (1,040 to 1,363 m). We identified three sampling points throughout the transect located in the vicinity of wetland habits: socopo1, socopo2 and socopo4. We did two types of recordings: 1) high quality recordings to characterize the advertisement call for M. lamarcai, non described to date (socopo4), and 2) recordings in different sampling points to evaluate call detectors performance in different acoustic scenarios (in all three localities).