Fish product mislabelling: failings of traceability in the production chain and implications for illegal, unreported and unregulated (IUU) fishing

Increasing consumer demand for seafood, combined with concern over the health of our oceans, has led to many initiatives aimed at tackling destructive fishing practices and promoting the sustainability of fisheries. An important global threat to sustainable fisheries is Illegal, Unreported and Unregulated (IUU) fishing, and there is now an increased emphasis on the use of trade measures to prevent IUU-sourced fish and fish products from entering the international market. Initiatives encompass new legislation in the European Union requiring the inclusion of species names on catch labels throughout the distribution chain. Such certification measures do not, however, guarantee accuracy of species designation. Using two DNA-based methods to compare species descriptions with molecular ID, we examined 386 samples of white fish, or products labelled as primarily containing white fish, from major UK supermarket chains. Species specific real-time PCR probes were used for cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) to provide a highly sensitive and species-specific test for the major species of white fish sold in the UK. Additionally, fish-specific primers were used to sequence the forensically validated barcoding gene, mitochondrial cytochrome oxidase I (COI). Overall levels of congruence between product label and genetic species identification were high, with 94.34% of samples correctly labelled, though a significant proportion in terms of potential volume, were mislabelled. Substitution was usually for a cheaper alternative and, in one case, extended to a tropical species. To our knowledge, this is the first published study encompassing a large-scale assessment of UK retailers, and if representative, indicates a potentially significant incidence of incorrect product designation.

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

Illegal, Unreported and Unregulated fishing has had a major role in the overexploitation of global fish populations. In response, international regulations have been imposed and many fisheries have been 'eco-certified' by consumer organizations, but methods for independent control of catch certificates and eco-labels are urgently needed. Here we show that, by using gene-associated single nucleotide polymorphisms, individual marine fish can be assigned back to population of origin with unprecedented high levels of precision. By applying high differentiation single nucleotide polymorphism assays, in four commercial marine fish, on a pan-European scale, we find 93-100% of individuals could be correctly assigned to origin in policy-driven case studies. We show how case-targeted single nucleotide polymorphism assays can be created and forensically validated, using a centrally maintained and publicly available database. Our results demonstrate how application of gene-associated markers will likely revolutionize origin assignment and become highly valuable tools for fighting illegal fishing and mislabelling worldwide.

Learning about probability from text and tables: Do color coding and labeling through an interactive-user interface help?

Learning from visual representations is enhanced when learners appropriately integrate corresponding visual and verbal information. This study examined the effects of two methods of promoting integration, color coding and labeling, on learning about probabilistic reasoning from a table and text. Undergraduate students (N = 98) were randomly assigned to learn about probabilistic reasoning from one of 4 computer-based lessons generated from a 2 (color coding/no color coding) by 2 (labeling/no labeling) between-subjects design. Learners added the labels or color coding at their own pace by clicking buttons in a computer-based lesson. Participants' eye movements were recorded while viewing the lesson. Labeling was beneficial for learning, but color coding was not. In addition, labeling, but not color coding, increased attention to important information in the table and time with the lesson. Both labeling and color coding increased looks between the text and corresponding information in the table. The findings provide support for the multimedia principle, and they suggest that providing labeling enhances learning about probabilistic reasoning from text and tables

Estratégias de posicionamento do azeite português

Dissertação de mestrado em Agricultura Sustentável, apresentada na Escola Superior Agrária de Santarém, Instituto Politécnico de Santarém.

Polioxometalatos: dos agregados moleculares a redes e materiais

Esta dissertação teve como objectivo principal a preparação de novos materiais luminescentes contendo lantanopolioxometalatos. Foram utilizados polioxometalatos (POMs) do tipo Keggin, Wells-Dawson e [Ln(M5O18)2]9- com M (VI) = W, Mo contendo diferentes iões lantanídeo. Foram sintetizados materiais híbridos orgânico-inorgânicos com base em lantanopolioxometalatos e ligandos orgânicos. O efeito da coordenação destes ligandos orgânicos na luminescência dos iões lantanídeo (efeito de antena) foi investigado para os ácidos picolínico e 3-hidroxipicolínico. Os estudos de fotoluminescência destes materiais permitiram mostrar a existência de um processo de sensitização da emissão dos iões lantanídeo através de fenómenos de transferência de energia dos ligandos e do POM para o centro emissor. No caso particular dos materiais híbridos contendo POMs do tipo Wells-Dawson, a introdução do ligando orgânico levou à intensificação da absorção de energia através do POM, a qual era praticamente inexistente nos correspondentes lantanopolioxometalatos. Prepararam-se nanocompósitos do tipo “core/shell” contendo POMs e híbridos orgânico-inorgânicos como núcleo rodeados por uma camada de sílica. Os nanocompósitos preparados apresentam uma estrutura “core/shell” bem definida com um diâmetro médio de aproximadamente 35 nm. As técnicas de microscopia electrónica, nomeadamente o mapeamento por EDX, permitiram confirmar a presença dos POMs no núcleo das nanopartículas de sílica. A biofuncionalização destes nanocompósitos com um anticorpo foi estudada, com vista à potencial aplicação destes sistemas como biomarcadores ópticos. Os estudos de microscopia de fluorescência permitiram observar a emissão do Eu3+ presente nas nanopartículas biofuncionalizadas com o anticorpo, utilizando excitação na zona do ultravioleta. Estes resultados reforçam a viabilidade da aplicação destes sistemas como marcadores celulares em alternativa a “quantum dots” e corantes orgânicos. No âmbito dos nanomateriais, foi também preparado um material constituído por partículas de Na9[Eu(W5O18)2] de dimensões nanométricas, utilizando micelas invertidas como nanoreactores, de forma a limitar o tamanho das partículas. Foi realizada a preparação de novos materiais lamelares luminescentes por intercalação de POMs e respectivos materiais híbridos em argilas aniónicas de zinco e alumínio. A intercalação foi realizada através de um método de troca aniónica directa usando uma argila contendo nitrato como anião precursor. O estudo por difracção de raios-X revelou-se uma técnica fundamental na caracterização destes materiais, nomeadamente através da determinação da altura de galeria. A partir deste parâmetro foi possível verificar a orientação da espécie intercalada na argila. No caso da intercalação do anião do tipo Keggin, o estudo por RMN de 31P MAS permitiu identificar a espécie intercalada na argila. As propriedades de luminescência foram estudadas para a generalidade dos novos materiais preparados.

Nanoparticle-based biosensors: development and application

Tese dout., Ciências Biotecnológicas, Universidade do Algarve, 2009

Machine learning techniques for music information retrieval

Tese de doutoramento, Informática (Engenharia Informática), Universidade de Lisboa, Faculdade de Ciências, 2015

Automatic Video Analysis for Fisheries Survey Systems

Thesis (Ph.D.)--University of Washington, 2015

Argonauta Video Database: General simulated scenes. Scene 1 (Right camera)

General simulated scenes These scenes followed a pre-defined script (see the Thesis for details), with common movements corresponding to general experiments. People go to or stand still in front of "J9", and/or go to the side of Argonauta reactor and come back again. The first type of movement is common during Irradiation experiments, where a material sample is put within the "J9" channel; and also during neutrongraphy or gammagraphy experiments, where a sample is placed in front of "J9". Here, the detailed movements of putting samples on these places were not reproduced in details, but only the whole bodies' movements were simulated (as crouching or being still in front of "J9"). The second type of movement may occur when operators go to the side of Argonauta to verify some operational condition. - Scene 1 (Obs.: Scene 1 of the "General simulated scenes" class): Comprises one of the scenes with two persons. Both of them use clothes of light colors. Both persons remain still in front of "J9"; one goes to the computer and then come back, and both go out. Video file labels: "20140326145315_IPCAM": recorded by the right camera,

Argonauta Video Database: General Simulated. Scene 1 (Left Camera)

General simulated scenes These scenes followed a pre-defined script (see the Thesis for details), with common movements corresponding to general experiments. People go to or stand still in front of "J9", and/or go to the side of Argonauta reactor and come back again. The first type of movement is common during Irradiation experiments, where a material sample is put within the "J9" channel; and also during neutrongraphy or gammagraphy experiments, where a sample is placed in front of "J9". Here, the detailed movements of putting samples on these places were not reproduced in details, but only the whole bodies' movements were simulated (as crouching or being still in front of "J9"). The second type of movement may occur when operators go to the side of Argonauta to verify some operational condition. - Scene 1 (Obs.: Scene 1 of the "General simulated scenes" class): Comprises one of the scenes with two persons. Both of them use clothes of light colors. Both persons remain still in front of "J9"; one goes to the computer and then come back, and both go out. Video file labels: "20140326145316_IPCAM": recorded by the left camera.

Argonauta Video Database: Spectrography experiment. Scene 1 (Right câmera)

Scenes for Spectrography experiment Scenes were recorded following the tasks involved in spectrography experiments, which are carried out in front of "J9" output radiadion channel, the latter in open condition. These tasks may be executed by one or two persons. One person can do the tasks, but requiring him to crouch in front of "J9" to adjust the angular position the experimental appartus (a crystal to bend the neutron radiation to the spectograph), and then to get up to verify data in a computer aside; these movements are repeated until achieving the right operational conditions. Two people may aid one another in such a way one remais crouched while the other remains still in front of the computer. They may also interchange tasks so as to divide received doses. Up to now, there are available two scenes with one person and one scene with two persons. These scenes are described in the sequel: - Scene 1: Comprises one of the scenes with one person performing spectography experiment. Video file labels: "20140327181335_IPCAM": recorded by the right camera

Argonauta Video Database: General simulated. Scene 2 (Right camera)

General simulated scenes These scenes followed a pre-defined script (see the Thesis for details), with common movements corresponding to general experiments. People go to or stand still in front of "J9", and/or go to the side of Argonauta reactor and come back again. The first type of movement is common during Irradiation experiments, where a material sample is put within the "J9" channel; and also during neutrongraphy or gammagraphy experiments, where a sample is placed in front of "J9". Here, the detailed movements of putting samples on these places were not reproduced in details, but only the whole bodies' movements were simulated (as crouching or being still in front of "J9"). The second type of movement may occur when operators go to the side of Argonauta to verify some operational condition. - Scene 2: Comprises one of the scenes with two persons. Both of them use clothes of dark colors. Both persons go to the side of Argonauta reactor and then come back and go out. Video file labels: "20140326154754_IPCAM": recorded by the right camera.

Argonauta Video Database: Spectography experiment. Scene 1 (Left camera)

Scenes for Spectrography experiment Scenes were recorded following the tasks involved in spectrography experiments, which are carried out in front of "J9" output radiadion channel, the latter in open condition. These tasks may be executed by one or two persons. One person can do the tasks, but requiring him to crouch in front of "J9" to adjust the angular position the experimental appartus (a crystal to bend the neutron radiation to the spectograph), and then to get up to verify data in a computer aside; these movements are repeated until achieving the right operational conditions. Two people may aid one another in such a way one remais crouched while the other remains still in front of the computer. They may also interchange tasks so as to divide received doses. Up to now, there are available two scenes with one person and one scene with two persons. These scenes are described in the sequel: - Scene 1: Comprises one of the scenes with one person performing spectography experiment. Video file labels:"20140327181336_IPCAM": recorded by the left camera.

Argonauta Video Database: Spectography experiment. Scene 2 (Right camera)

Scenes for Spectrography experiment Scenes were recorded following the tasks involved in spectrography experiments, which are carried out in front of "J9" output radiadion channel, the latter in open condition. These tasks may be executed by one or two persons. One person can do the tasks, but requiring him to crouch in front of "J9" to adjust the angular position the experimental appartus (a crystal to bend the neutron radiation to the spectograph), and then to get up to verify data in a computer aside; these movements are repeated until achieving the right operational conditions. Two people may aid one another in such a way one remais crouched while the other remains still in front of the computer. They may also interchange tasks so as to divide received doses. Up to now, there are available two scenes with one person and one scene with two persons. These scenes are described in the sequel: - Scene 2: Another take similat to Scene 1. Video file labels: "20140327180749_IPCAM": recorded by the right camera.

Argonauta Video Database: Spectography experiment. Scene 2 (Left camera)

Scenes for Spectrography experiment Scenes were recorded following the tasks involved in spectrography experiments, which are carried out in front of "J9" output radiadion channel, the latter in open condition. These tasks may be executed by one or two persons. One person can do the tasks, but requiring him to crouch in front of "J9" to adjust the angular position the experimental appartus (a crystal to bend the neutron radiation to the spectograph), and then to get up to verify data in a computer aside; these movements are repeated until achieving the right operational conditions. Two people may aid one another in such a way one remais crouched while the other remains still in front of the computer. They may also interchange tasks so as to divide received doses. Up to now, there are available two scenes with one person and one scene with two persons. These scenes are described in the sequel: - Scene 2: Another take similat to Scene 1. Video file labels: "20140327180750_IPCAM": recorded by the left camera.