The ADH1B Arg47His polymorphism in East Asian populations and expansion of rice domestication in history

Background: The emergence of agriculture about 10,000 years ago marks a dramatic change in human evolutionary history. The diet shift in agriculture societies might have a great impact on the genetic makeup of Neolithic human populations. The regionally restricted enrichment of the class I alcohol dehydrogenase sequence polymorphism (ADH1BArg47His) in southern China and the adjacent areas suggests Darwinian positive selection on this genetic locus during Neolithic time though the driving force is yet to be disclosed. Results: We studied a total of 38 populations (2,275 individuals) including Han Chinese, Tibetan and other ethnic populations across China. The geographic distribution of the ADH1B*47His allele in these populations indicates a clear east-to-west cline, and it is dominant in south-eastern populations but rare in Tibetan populations. The molecular dating suggests that the emergence of the ADH1B*47His allele occurred about 10,000 similar to 7,000 years ago. Conclusion: We present genetic evidence of selection on the ADH1BArg47His polymorphism caused by the emergence and expansion of rice domestication in East Asia. The geographic distribution of the ADH1B*47His allele in East Asia is consistent with the unearthed culture relic sites of rice domestication in China. The estimated origin time of ADH1B*47His allele in those populations coincides with the time of origin and expansion of Neolithic agriculture in southern China.

Hydrodynamic pressures behind flexible and rigid dams

During earthquakes, hydrodynamic pressures are generated by the impounded reservoir on the dam face. The magnitude and distribution of the hydrodynamic pressures vary with factors such as frequency and intensity of earthquake-induced ground motion, depth of impounded reservoir, stiffness of dam and geological conditions. It is difficult to obtain experimental data on hydrodynamic pressures from the field owing to uncertainties associated with earthquake loading. This paper aims at using dynamic centrifuge modelling to measure hydrodynamic pressures behind both relatively stiff and flexible model dams. Comparisons of the experimental data with theoretical hydrodynamic pressures show that Westergaard's equation gives a conservative estimation of hydrodynamic pressures. Comparison with Chopra's method revealed that it underpredicts hydrodynamic pressures for low reservoir depths but gives reasonably good predictions for higher depths of reservoir. It is concluded that dynamic centrifuge modelling may be an effective experimental method to estimate the hydrodynamic pressures acting on a dam. © 2010 Thomas Telford Ltd.

Challenges to effective fishing and preferred fishing gear in a hydrodynamic freshwater system

Challenges to fishing and preferred gear of multiple used Lake, whose water depth is controlled by opening of its dam gate were investigated. Geographic survey, interview and focused group discussion of fishermen were used to assess factors influencing effectiveness of fishing and the preferred gear of Asejire Lake. Water usage (s) such as frequency of Complete and Partial Opening of Dams Gate (CODG and PODG) were investigated as indices for hydrodynamic condition. Response during focused group discussion with about 33% of fishermen of the Lake were obtained on sources of disturbance to effective fishing (SDEF), most effective gear (MEG)- least environmentally perturbed gear, comparability of catch structure of preferred gear to conventional gear and sustainability of superiority of preferred gears in situations outside hydrodynamic condition (SSPPG). The PODG occurred 1-7times/Month-dry season, 15-18times/Month-wet season; CODG occurred 1-2times/Month in both season; Interval of CODG was 3-17 and 5-12days (dry and wet season). It affected set-net and catch. The SDEF were gear availability, weather condition, dam’s gate opening, religion activities and Health of fisher-folks. 50% respondents accepted opening of dams gate as most important disturbance while religion was least (5% respondents accepted). 60% respondents accepted traps as MEG being the least affected while 75% respondents accepted Gura cage trap as the MEG among traps.90% respondents accepted that among traps, its catch structure was closest (comparable) to conventional gear. However, 75% respondents rejected SSPPG. Opening of dams’ gate creates hydrodynamic condition and it affects fishing. Gura trap was preferred for fishing hydrodynamic condition.

Expansion of the Actin Gene Family in Amphioxus

肌动蛋白是一种分布广泛而且在进化上十分保守的蛋白,是构成细胞骨架的关键组分.肌动蛋白通常被分成肌肉型和胞质型两种类型,各自行使着不同的功能.在此,作者对弗罗里达文昌鱼基因组中的肌动蛋白基因家族进行了系统分析,发现文昌鱼中该基因家族成员多达30多个,其中很多都是连锁分布的.基因结构趋于多样,分别包含2～7个外显子.进化分析的结果显示,文昌鱼的肌动蛋白基因家族可能通过串联重复而发生了扩增.作者还克隆了厦门文昌鱼两个不同的肌肉犁肌动蛋白基因,并比较了它们在文昌鱼早期胚胎中的表达图式.结果显示,这两个基因在表达上有着细微的差别,提示文昌鱼肌动蛋白基因家族成员在功能上的分化.上述结果将有助于阐明肌动蛋白基因家族及其功能在脊索动物中的演化.

The unusual adaptive expansion of pancreatic ribonuclease gene in carnivora

Pancreatic ribonuclease (RNASE1) is a digestive enzyme that has been recognized to be one of the most attractive model systems for molecular evolutionary studies. The contribution of RNASE1 gene duplication to the functional adaptation of digestive physio

Late Pleistocene divergence and subsequent population expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and Australian anchovy (Engraulis australis)

Climatic oscillations during the Pleistocene ice ages produced great changes in species' geographical distribution and abundance, which could be expected to have genetic consequences. Living in the temperate upwelling zones of the northwestern Pacific, Ja

A Profound Role for the Expansion of Trypsin-Like Serine Protease Family in the Evolution of Hematophagy in Mosquito

The trypsin-like serine protease (Tryp_SPc) family is ubiquitous in animals and plays diverse roles, especially in the digestive system, in different phyla. In the mosquito, some Tryp_SPc proteases make important contributions to the digestion of the bloo