Study of whole genome linkage disequilibrium in Nellore cattle

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height

Background: Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs).Results: The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length.Conclusions: This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). © 2013 Utsunomiya et al.; licensee BioMed Central Ltd.

Estimates of genetic parameters for carcass, growth and reproductive traits in Nellore cattle

The objective of this study was to estimate genetic parameters for female mature weight (FMW), age at first calving (AFC), weight gain from birth to 120 days (WG_B_120), from 210 to 365 days (WG_210_365), rib eye area (REA), back fat thickness (BF), rump fat (RF) and body weight at scanning date (BWS) using single and multiple-trait animal models by the REML method from Nellore cattle data. The estimates of heritability ranged from 0.163±0.011 for WG_210_365 to 0.309±0.028 for RF using the single-trait model and from 0.163±0.010 for WG_210_365 to 0.382±0.025 for BWS using the multiple-trait model. The estimates of genetic correlations ranged from -0.35±0.08 between AFC with BF to 0.69±0.04 between WG_B_120 with BWS. Selection for weights gains, REA, and BWS can improve FMW. © 2013 Elsevier B.V.

Genetic parameter estimates and principal component analysis of breeding values of reproduction and growth traits in female Canchim cattle

Phenotypic data from female Canchim beef cattle were used to obtain estimates of genetic parameters for reproduction and growth traits using a linear animal mixed model. In addition, relationships among animal estimated breeding values (EBVs) for these traits were explored using principal component analysis. The traits studied in female Canchim cattle were age at first calving (AFC), age at second calving (ASC), calving interval (CI), and bodyweight at 420 days of age (BW420). The heritability estimates for AFC, ASC, CI and BW420 were 0.03±0.01, 0.07±0.01, 0.06±0.02, and 0.24±0.02, respectively. The genetic correlations for AFC with ASC, AFC with CI, AFC with BW420, ASC with CI, ASC with BW420, and CI with BW420 were 0.87±0.07, 0.23±0.02, -0.15±0.01, 0.67±0.13, -0.07±0.13, and 0.02±0.14, respectively. Standardised EBVs for AFC, ASC and CI exhibited a high association with the first principal component, whereas the standardised EBV for BW420 was closely associated with the second principal component. The heritability estimates for AFC, ASC and CI suggest that these traits would respond slowly to selection. However, selection response could be enhanced by constructing selection indices based on the principal components. © CSIRO 2013.

Perfil da nutrição mineral dos rebanhos leiteiros, na microrregião de Castanhal e no município de Uruará, Estado do Pará

O estudo é uma ação de pesquisa do projeto "Sustentabilidade da pecuária leiteira da agricultura familiar da Amazônia Oriental", desenvolvido pela Embrapa Amazônia Oriental e propôs determinar os principais problemas da nutrição mineral nos sistemas de produção leiteira de pequenas e médias propriedades na microrregião de Castanhal (MrC) e no município de Uruará (MuU), Estado do Pará. Como objetivos específicos visou definir as características da suplementação mineral efetuada nas propriedades, bem como analisar o conteúdo mineral das pastagens formadas de Brachiaria brizantha cv. Marandu. Para isso, foram utilizados dois estudos sendo que no primeiro foram definidas as características da suplementação mineral nos sistemas de produção leiteira de ambos os locais estudados através de um questionário/entrevista. Dos dados obtidos pelo questionário/entrevista foram extraídas 22 variáveis consideradas importantes que foram classificadas em quatro grupos principais. Utilizou-se a estatística descritiva aplicando-se o teste de Qui-quadrado ao nível de 5% de probabilidade para determinação das diferenças testadas. No segundo estudo foram colhidas amostras de Brachiaria brizantha cv. Marandu em duas propriedades da MrC e quatro do MuU. As amostras de forragem foram colhidas em dois períodos distintos do ano, final do período seco (novembro/1998) e final do período chuvoso (junho/1999) para determinação de cálcio (Ca), fósforo (P), magnésio (Mg), sódio (Na), potássio (K), cobre (Cu), zinco (Zn), ferro (Fe), manganês (Mn) e cobalto (Co). O delineamento experimental utilizado para a amostragem da forragem foi inteiramente casualisado considerando os dois locais estudados (MrC e MuU) como sendo dois fatores e os dois períodos do ano (chuvoso e seco) foram considerados como sub-parcelas. A análise de variância foi realizada pelo método de mínimos quadrados e o teste F foi utilizado ao nível de 5% para testar os efeitos. O teste de Tukey foi utilizado para comparação das médias. Na microrregião de Castanhal, a Brachiaria brizantha cv. Marandu não atendeu as necessidades de P, Na, Cu e Zn sugeridas para bovinos de corte, categoria vacas em lactação e demonstra a necessidade de suplementação mineral via cocho. Apesar da atividade leiteira ser mais antiga nessa microrregião, os criadores não conseguem distinguir as necessidades diferenciadas de requerimento dentro das categorias de produção animal. Esse desconhecimento deve ser considerado como um importante fator de restrição de produtividade. Particularmente nessa microrregião, a baixa concentração de P na forragem durante o período chuvoso parece agravar o problema da deficiência mineral por se tratar de um período de maior disponibilidade protéicoenergético da forragem, fazendo com que o animal requeira maiores quantidades do elemento fósforo na dieta. No município de Uruará, a Brachiaria brizantha cv. Marandu não atendeu as necessidades de P, Na e Cu, sugeridas pelo NRC (1986) para bovinos de corte, categoria vacas em lactação e demonstra também a necessidade de suplementação mineral via cocho. Nesse município, observou-se um baixo consumo de mistura mineral e as condições dos cochos eram precárias. A localização do cocho dentro do curral e o acesso somente durante o período de ordenha inibiu o consumo de mistura minera!. A freqüência elevada de relatos de apetite depravado, atraso no cio, fratura espontânea, diminuição do apetite e emagrecimento dos animais, são sintomas sugestivos de deficiência clínica de P e Cu sintetizam a baixa qualidade da nutrição dos animais neste local.

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Genomic selection and assisted reproduction technologies to foster cattle breeding

Genomics has been propagated as a paradigm shifting innovation in livestock during the last decade. The possibility of predicting breeding values using genomic information has revolutionized the dairy cattle industry and is now being implemented in beef cattle. In this paper we discuss how genomics is changing cattle breeding through genomic selection, and how this change is creating new ways to articulate assisted reproduction technologies with animal breeding. We also debate that the scientific community is still starting the long journey to reveal the functional aspects of the cattle genome, and that knowledge in this field is the frontier to a whole new venue for the development of novel applications in the livestock sector.

Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Quantitative genetic study of age at subsequent rebreeding in Nellore cattle by using survival analysis

The continuous trait age at subsequent rebreeding (ASR) was evaluated using survival analysis in Nellore breed cows that conceived for the first time at approximately 14 months of age. This methodology was chosen because the restricted breeding season produces censored data. The dataset contained 2885 records of ASR (in days). Records of females that did not produce calves in the following year after being exposed to a sire were considered censored (48.3% of the total). The statistical model used was a Weibull mixed survival model, which included fixed effects of contemporary groups (CG) and period and a random effect of individual animal. The effect of contemporary groups on ASR was significant (P < 0.01). Heritabilities obtained for ASR were 0.03 and 0.04 in logarithmic and original scales, respectively. These results indicate that the genetic selection response for subsequent reproduction of 2-year-old Nellore breed females is not expected to be effective based on survival analysis. Furthermore, these results suggest that environmental improvement is fundamental to this important trait. It should be highlighted that an increase in the average date of birth can produce an adverse effect in the future, since this cannot be compensated by genetic improvement.

Reducing supplementation frequency for Nellore beef steers grazing tropical pastures

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Polymorphism analysis in genes of the somatotropic axis in Nellore cattle selected for growth

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Effects of flunixin meglumine administration on physiological and performance responses of transported feeder cattle

The objective was to evaluate the effects of flunixin meglumine administration on physiological and performance responses of transported cattle during feedlot receiving. Forty-five Angus x Hereford steers were ranked by BW on d 0 and assigned to 1 of 3 treatments:1) transport for 1,280 km in a commercial livestock trailer and administration of flunixin meglumine (1.1 mg/kg BW; intravenous) at loading (d 0) and unloading (d 1; FM), 2) transport for 1,280 km in a commercial livestock trailer and administration of 0.9% saline (0.022 mL/kg BW; intravenous) at loading (d 0) and unloading (d 1; TRANS), or 3) no transport and administration of 0.9% saline (0.022 mL/kg BW; intravenous) concurrently with loading (d 0) and unloading (d 1) of FM and TRANS cohorts (CON). Upon arrival and processing for treatment administration on d 1, steers within each treatment were ranked by BW and assigned to 15 feedlot pens (5 pens/treatment, 3 steers/pen). Full BW was recorded before (d -1 and 0) treatment application and at the end of experiment (d 28 and 29) for ADG calculation. Total DMI was evaluated daily from d 1 to 28. Blood samples were collected on d 0 (before treatment administration), 1 (after unloading but before treatment administration), 4, 7, 10, 14, 21, and 28. Body weight shrink from d 0 to 1 was less (P < 0.01) in CON vs. FM and TRANS but similar (P = 0.94) between TRANS and FM. Mean ADG was greater (P <= 0.04) in CON vs. FM and TRANS but similar (P = 0.69) between TRANS and FM. No treatment effects were detected on DMI, but CON had greater G:F vs. TRANS (P = 0.08) and FM (P = 0.02), whereas G:F was similar (P = 0.68) between TRANS and FM. Mean plasma cortisol concentrations tended (P <= 0.09) to be greater in TRANS vs. FM and CON but was similar (P = 0.87) between CON and FM. Plasma NEFA concentrations were greater (P <= 0.02) for TRANS and FM vs. CON on d 1 and greater (P <= 0.04) for FM vs. TRANS and CON on d 4. Plasma ceruloplasmin concentrations were greater (P <= 0.03) for TRANS vs. CON on d 1, 4, and 7, greater (P <= 0.05) for TRANS vs. FM on d 4 and 7, and greater (P <= 0.04) for FM vs. CON on d 1 and 4. Plasma haptoglobin concentrations were greater (P < 0.01) for TRANS vs. CON and FM on d 1 and 4 and greater (P <= 0.05) for FM vs. CON on d 1 and 4. In conclusion, flunixin meglumine reduced the cortisol and acute-phase protein responses elicited by road transport but did not improve receiving performance of feeder cattle.

Rest stops during road transport: Impacts on performance and acute-phase protein responses of feeder cattle

Angus x Hereford steers (n = 42) and heifers (n = 21) were ranked by gender and BW on d 0 of the experiment and randomly assigned to 1 of 3 treatments: 1) no transport and full access to feed and water (CON); 2) continuous road transport for 1,290 km (TRANS), or 3) road transport for 1,290 km, with rest stops every 430 km (STOP; total of 2 rest stops). Treatments were applied from d 0 to 1 of the experiment. Cattle from TRANS and STOP treatments were transported in separate commercial livestock trailers, within a single 2.1 x 7.2 m compartment, but through the exact same route. During each rest stop, STOP cattle were unloaded and offered mixed alfalfa-grass hay and water for ad libitum consumption for 2 h. Upon arrival of STOP and TRANS on d 1, cattle were ranked by sex and BW within each treatment and assigned to 21 feedlot pens (7 pens/treatment; 2 steers and 1 heifer/pen). Full BW was recorded before (d -1 and 0) treatment application and at the end of experiment (d 28 and 29). Total DMI was evaluated daily from d 1 to 28. Blood samples were collected on d 0 (before loading of TRANS and STOP cattle), 1 (immediately after unloading of TRANS and STOP cattle), 4, 7, 10, 14, 21, and 28. Body weight shrink from d 0 to d 1 was reduced (P < 0.01) in CON compared to TRANS and STOP, and reduced in STOP compared to TRANS. Mean ADG was greater (P < 0.05) in CON compared to TRANS and STOP, but similar (P = 0.68) between TRANS and STOP. No treatment effects were detected (P >= 0.18) on hay, concentrate, and total DMI. Mean G: F was greater (P = 0.05) in CON compared to STOP, tended to be greater (P = 0.08) in CON compared to TRANS, and similar (P = 0.85) between TRANS and STOP. Plasma cortisol concentrations were greater (P <= 0.04) in TRANS compared to CON and STOP on d 1, and greater (P = 0.04) in TRANS compared to CON on d 4. Serum NEFA concentrations were greater (P < 0.01) in TRANS compared to CON and STOP on d 1, and greater (P <= 0.05) in TRANS compared to CON on d 4 and 7. Mean plasma ceruloplasmin concentrations were similar (P = 0.19) among treatments. Plasma haptoglobin concentrations were greater (P <= 0.04) in TRANS compared to CON and STOP on d 1, and in STOP compared to CON on d 1. In conclusion, inclusion of rest stops during a 1,290-km transport prevented the increase in circulating cortisol and alleviated the NEFA and haptoglobin response elicited by transport, but did not improve feedlot receiving performance of transported cattle.

Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Crude glycerin in diets for feedlot Nellore cattle

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)