ON AMINO ACID AND CODON ASSIGNMENT IN ALGEBRAIC MODELS FOR THE GENETIC CODE

We give a list of all possible schemes for performing amino acid and codon assignments in algebraic models for the genetic code, which are consistent with a few simple symmetry principles, in accordance with the spirit of the algebraic approach to the evolution of the genetic code proposed by Hornos and Hornos. Our results are complete in the sense of covering all the algebraic models that arise within this approach, whether based on Lie groups/Lie algebras, on Lie superalgebras or on finite groups.

Emissions Characterisation of residential pellet boilers during start-up and stop periods

In this study, gaseous emissions and particles are measured during start-up and stop periods for an over-fed boiler and an under-fed boiler. Both gaseous and particulate matter emissions are continuously measured in the laboratory. The measurement of gaseous emissions includes oxygen (O2), carbon dioxide (CO2), carbon monoxide (CO), nitrogen oxide and (NO). The emissions rates are calculated from measured emissions concentrations and flue gas flow. The behaviours of the boilers during start-up and stop periods are analysed and the emissions are characterised in terms of CO, NO, TOC and particles (PM2.5 mass and number). The duration of the characterised periods vary between two boilers due to the difference in type of ignition and combustion control. The under-fed boiler B produces higher emissions during start-up periods than the over-fed boiler A. More hydrocarbon and particles are emitted by the under-fed boiler during stop periods. Accumulated mass of CO and TOC during start-up and stop periods contribute a major portion of the total mass emitted during whole operation. However, accumulated mass of NO and PM during start-up and stop periods are not significant as the duration of emission peak is relatively short.

Can France really stop them? : A study grounded on the realist perspective about the French foreign policy towards Syria as the root cause of the Phenomenon of French Foreign Fighters

During the Syrian conflict the number of European Foreign Fighters has increased exponentially and has become an ever-growing concern for European policymakers. This phenomenon presents host of major security challenges for European policymakers and governments. Among European countries, France provides the highest number of citizens who have gone to Syria to fight against Assad´s regime. The French authorities have estimated that by mid-2014, over 700 French citizens have left France and travelled to Syria to fight. Historically France has had a relationship with Syria which started with its role as a border-drawing colonial power. Grounded in a framework of realism, that emphasizes nation-states as the primary actor within the international system, the analysis concentrates on the role of France´s foreign policy on the Syria as push factor for terrorism and radicalization. This paper attempts to determinate a specific correlation between the policy that France has been conducting towards Syria between 2000 and 2015, and the phenomenon of French Foreign Fighters. Findings suggest that France´s foreign policy towards Syria is the main root cause of the French Foreign Fighters phenomenon.

Stop the Presses!

Last month a new study commissioned by the British Library and the Joint Information Systems Committee (JISC) issued one of those “Duh!” reports. The new study (available here http://www. bl.uk/news/pdf/googlegen.pdf) found that the “Google Generation,” or those brought up by computer wolves, is not very Web-literate.

Efeito da abertura comercial na variação da taxa de câmbio real em episódios de sudden stop

A dissertação investiga a relação entre a abertura comercial e o custo de reversão do saldo da conta corrente em economias que sofrem episódios de contração abrupta do influxo de capital. Nesses episódios, os governos procuram inicialmente equilibrar o balanço de pagamentos recorrendo às reservas internacionais, mas normalmente o fenômeno persiste até que se efetive uma desvalorização real do câmbio. Apresentamos um modelo simples para mostrar que, em economias mais abertas comercialmente, o saldo da balança comercial responde com mais intensidade à desvalorização cambial. Dessa forma, a reversão do saldo de conta corrente em episódios de restrição de liquidez decorrentes da contração dos influxos de capital é alcançada de maneira menos custosa. Confirmamos essa constatação teórica para países emergentes através de um exercício empírico que utiliza dados trimestrais de 42 países entre 1980 e 2003.

Aplicação de uma regra de stop-loss no mercado brasileiro

Nesta dissertação é proposta uma estrutura de trading para analisar o desempenho da estratégia de Stop-Loss em termos de ganho de valor. Fundamentada no paper de Kaminsky e Lo (2014), a regra consiste em alternar de um ativo de alta volatilidade para um ativo livre de risco baseado em uma regra binária de Stop-Loss. Foram encontrados resultados nominais positivos, redução de volatilidade e consequente aumento do coeficiente retorno/volatilidade.

A first case of protease codon 35 amino acid insertion in a HIV-1 subtype B sequence detected in the Bauru region, state of São Paulo, Brazil: case report

Inserções de aminoácidos na protease têm sido raramente descritas em pacientes infectados pelo HIV. Uma destas inserções foi, recentemente, descrita no codon 35, embora seu impacto na resistência mantém-se pouco conhecido. Este trabalho apresenta um caso de uma variante viral com inserção no codon 35 da protease, descrita pela primeira vez em Bauru, São Paulo, Brasil, circulante em um homem, caucasiano, com 38 anos, o qual apresenta infecção assintomática pelo HIV desde 1997. A variante isolada mostrou uma inserção no codon 35 da protease de dois aminoácidos: uma treonina e um ácido aspártico, resultando na sequência de aminoácidos E35E_TD.

Stop-lepton associated production at hadron colliders

At hadron colliders, the search for R-parity violating supersymmetry can probe scalar masses beyond what is covered by pair production processes. We evaluate the next-to-leading order SUSY-QCD corrections to the associated stop or sbottom production with a lepton through R-parity violating interactions. We show that higher order corrections render the theoretical predictions more stable with respect to variations of the renormalization and factorization scales and that the total cross section is enhanced by a factor up to 70% at the Tevatron and 50% at the LHC. We investigate in detail how the heavy supersymmetric states decouple from the next-to-leading order process, which gives rise to a theory with an additional scalar leptoquark. In this scenario the inclusion of higher order QCD corrections increases the Tevatron reach on leptoquark masses by up to 40 GeV and the LHC reach by up to 200 GeV. (C) 2003 Published by Elsevier B.V. B.V.

Strong-interaction effects in stop pair production at e+e- colliders

We discuss perturbative and non-perturbative strong-interaction effects in the pair production of stop squarks (t̃1) at e+e- colliders. Events with an additional hard gluon allow to detect or exclude t̃1t̃*1 production even in scenarios with very small mass splitting between ti and an invisible lightest supersymmetric particle (LSP). Such events can also help to establish that t̃1 transforms as a triplet under SU(3)C. We also carefully study non-perturbative t̃1 fragmentation, which is currently not well understood: not only is the t̃1 fragmentation function not known very well, but also there are ambiguities in the algorithm employed to model fragmentation. We present numerical results both for CERN LEP-183 and for a proposed future e+e- collider operating at center-of-mass energy s1/2 = 500 GeV.

Avian coronavirus Spike Glycoprotein Ectodomain Shows a Low Codon Adaptation to Gallus gallus with Virus-Exclusive Codons in Strategic Amino Acids Positions

This is a study on the Avian coronavirus IBV and chicken host-relationship from the codon usage point of view based on fifty-nine non-redundant IBV S1 sequences (nt 1-507) from strains detected worldwide and chicken tissue-specific protein genes sequences from IBV-replicating sites. The effective number of codons (ENC) values ranged from 36 to 47.8, indicating a high-to-moderate codon usage bias. The highest IBV codon adaptation index (CAI) value was 0.7, indicating a distant virus versus host synonymous codons usage. The ENC x GC3 % curve indicates that both mutational pressure and natural selection are the driving forces on codon usage pattern in S1. The low CAI values agree with a low S protein expression and considering that S protein is a determinant for attachment and neutralization, this could be a further mechanism besides mRNA transcription attenuation for a low expression of this protein leading to an immune camouflage.

Analysing the role of short stop during the formation of synaptic terminals in Drosophila melanogaster

Diese Arbeit untersucht die Funktion des Spektraplakin Proteins Short Stop (Shot) während der strukturellen Differenzierung von synaptischen Endigungen in Drosophila melanogaster. Im Allgemeinen scheinen Proteine der Spektraplakin Familie multiple Protein-Protein Interaktionen mithilfe ihrer unterschiedlichen modularen Domänen zu vermitteln. In der vorgelegten Arbeit sollten spezifische Domänen identifiziert werden, die für die Ausbildung synaptischer Endigungen notwendig sind. Hierzu wurden shot-Funktionsverlustmutationen, für die zum Teil molekulare Information über die Mutationsereignisse erhältlich sind, anhand von verschiedenen Markern für synaptische Proteine analysiert. Ferner konnten einzelne Protein Domänen von Shot in neuronalen Geweben mithilfe des Gal4/UAS-Systems exprimiert und ihre Lokalisation untersucht werden. Darüber hinaus wurden immunohistochemische Studien unter Verwendung von Antikörpern, welche spezifisch für unterschiedliche Shot Protein Domänen sind, ausgeführt. Schließlich sollte das Yeast-two-Hybrid’-System sowie genetische Studien Interaktionspartner von Shot identifizieren. Die Unterschiedlichen experimentellen Ansätze deuten darauf hin, dass die einzelnen Protein Domänen von Shot unterschiedliche Protein-Protein Interaktionen vermitteln. Der N-Terminus von Shot scheint essentiell für die Ausbildung motorneuronaler Endigungen zu sein. Außerdem konnten mehrere potentielle Interaktionspartner identifiziert werden, so dass die hier beschriebenen Ergebnisse eine Grundlage für weitere Studien zur Untersuchung der strukturellen Differenzierung synaptischer Endigungen darstellen.