Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets

Transcriptional regulation in papillomaviruses depends on sequence-specific binding of the regulatory protein E2 to several sites in the viral genome. Crystal structures of bovine papillomavirus E2 DNA targets reveal a conformational variant of B-DNA characterized by a roll-induced writhe and helical repeat of 10.5 bp per turn. A comparison between the free and the protein-bound DNA demonstrates that the intrinsic structure of the DNA regions contacted directly by the protein and the deformability of the DNA region that is not contacted by the protein are critical for sequence-specific protein/DNA recognition and hence for gene-regulatory signals in the viral system. We show that the selection of dinucleotide or longer segments with appropriate conformational characteristics, when positioned at correct intervals along the DNA helix, can constitute a structural code for DNA recognition by regulatory proteins. This structural code facilitates the formation of a complementary protein–DNA interface that can be further specified by hydrogen bonds and nonpolar interactions between the protein amino acids and the DNA bases.

An investigation of the effectiveness of existing bridge design methodology in providing adequate structural resistance to seismic disturbances : Phase III, Nonlinear soil-structure interaction of skew highway bridges : final report : prepared for Federal Highway Administration, Offices of Research and Development /

Bibliography: p. 46-48.

Alcoa structural handbook ; a design manual for aluminum.

"Supplement; a reprint of ASCE Proceedings ...: Paper number 970, Specifications for structures of aluminum alloy 6061-T6; second progress report of the Committee of the Structural Division on Design in Lightweight Structural Alloys [and] Paper number 971, Specifications for structures of aluminum alloy 2014-T6; third progress report of the Committee of the Structural Division on Design in Lightweight Structural Alloys": 34, 32 pages at end.

Improved design for safety belts. Final report.

Mode of access: Internet.

Final design and implementation plan for evaluating the effectiveness of FMVSS 220--school bus rollover protection, FMVSS 221--school bus body joint strength, FMVSS 222--school bus seating and crash protection.

National Highway Traffic Safety Administration, Washington, D.C.

Specification for the design of light gage cold-formed steel structural members.

Mode of access: Internet.

Design of array processor software for nonlinear structural analysis /

"Dec. 1983."

Specification for the design, fabrication and erection of structural steel for buildings : adopted April 17, 1963 /

"Publ. no. S310-8/65; reprinted from Manual of steel construction"--p. [4] of cover.

Structural Pest Control Act and Code, 2002.

"P.O. #532463"--Colophon.

Revenue Act of 1963 : hearings before the Committee on Finance, United States Senate, Eighty-eighth Congress, first session, on H.R. 8363, an act to amend the Internal Revenue Code of 1954 to reduce individual and corporate income taxes to make certain structural changes with respect to the income tax, and for other purposes.

Hearings held Oct. 15, 1963 - Dec. 10, 1963.

Theory of structural analysis and design.

Mode of access: Internet.

Advanced design in structural steel /

Includes bibliographies and index.

Predictive design procedures, VESYS users manual : an interim design method for flexible pavements using the VESYS structural subsystem /

Mode of access: Internet.

Coupled thermal, structural and vibrational analysis of a hypersonic engine for flight test

This paper describes a relatively simple and quick method for implementing aerodynamic heating models into a finite element code for non-linear transient thermal-structural and thermal-structural-vibrational analyses of a Mach 10 generic HyShot scramjet engine. The thermal-structural-vibrational response of the engine was studied for the descent trajectory from 60 to 26 km. Aerodynamic heating fluxes, as a function of spatial position and time for varying trajectory points, were implemented in the transient heat analysis. Additionally, the combined effect of varying dynamic pressure and thermal loads with altitude was considered. This aero-thermal-structural analysis capability was used to assess the temperature distribution, engine geometry distortion and yielding of the structural material due to aerodynamic heating during the descent trajectory, and for optimising the wall thickness, nose radius of leading edge, etc. of the engine intake. A structural vibration analysis was also performed following the aero-thermal-structural analysis to determine the changes in natural frequencies of the structural vibration modes that occur at the various temperatures associated with the descent trajectory. This analysis provides a unique and relatively simple design strategy for predicting and mitigating the thermal-structural-vibrational response of hypersonic engines. (C) 2006 Elsevier SAS. All rights reserved.

Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design

The cyclotide family of plant proteins is of interest because of their unique topology, which combines a head-to-tail cyclic backbone with an embedded cystine knot, and because their-remarkable chemical and biological properties make them ideal candidates as grafting templates for biologically active peptide epitopes. The present Study describes the first steps towards exploiting the cyclotide framework by synthesizing and structurally characterizing two grafted analogues of the cyclotide kalata B1. The modified peptides have polar or charged residues substituted for residues that form part of a surface-exposed hydrophobic patch that plays a significant role in the folding and biological activity of kalata B1. Both analogues retain the native cyclotide fold, but lack the undesired haemolytic activity of their parent molecule, kalata B1. This finding confirms the tolerance of the cyclotide framework to residue Substitutions and opens up possibilities for the Substitution of biologically active peptide epitopes into the framework.