Mechanical relaxation time of comblike polymer electrolyte

Using poly(styrene-co-maleic anhydride) as the backbone and poly(ethylene glycol) methyl ether as side chains,three kinds of comblike polymers of different side chain length were synthesized. The Li-salt complexes and their firms were prepared. The dynamic mechanical properties were investigated. It was found that the main chain was rigid and the side chain was flexible in this comblike polymer system. Based on the time-temperature equivalence principle, a master curve was constructed. By selecting T-alpha as reference temperature, Arrhenius plots of shift factor and iso-free-volume plots were attained. The values of WLF parameters C-1 and C-2 increase with increasing salt concentration. By reference to T-0 = 50 degrees C, the relation between the average relaxation time 1g tau(c) and Li-salt concentration C is linear. The master curves are displaced progressively to higher frequencies as the M-w of side chains is increased. The relation between the average relaxation time 1g tau(n) and M-w of side chains is also linear. And the master curves are movable with the change of salts. It shows the effect of different kinds of salt on relaxation time.

The FeCl3-doped poly(3-alkyithiophenes) in solid state

The FeCl3-doped three poly(3-alkylthiophenes) (P3ATs) in solid state, i.e. poly( 3-octylthiophenl) (P3OT), poly(3-dodecylthiophene) (P3ODT) and poly( 3-octadecylthiophene) (P3ODT), were investigated in this paper. In X-ray diffraction results, there are obvious variations of the interlayer and interlayer spacings in the layered structures of P3ATs. In addition, it is found that some orientations of the side-chain groups occur after the doping process. The infrared spectra have also shown the microstructural changes arising from the readjustments of the polymer chains due to the intervention of the dopant. The presence of dopant leads to the formation of bipolarons and polarons at the same time. The conductivity measurements reveal that the conductivity decreases with the increase of the length of sidechain group. We have also observed the relaxation behaviors in the conductivities of the doped polymers. (C) 2001 Elsevier Science B.V. All rights reserved.

The effects of different alkyl substitution on the structures and properties of poly(3-alkylthiophenes)

In order to investigate the influence of different alkyl side chain substitution on the structures and properties of P3ATs, X-ray diffraction, differential scanning calorimetry (DSC), thermal gravity analysis (TGA), Fourier transform infrared spectra (FTIR) and ultraviolet-visible spectra (W-VIS) were applied to characterizing the samples of ploy(3-octylthiophene) (P3OT), poly(3-dodecylthiophene) (P3DDT) and poly(3-octadecylthiophene) (P3ODT). It is found that the different length of alkyl group substitution leads to great difference in molecular chain packings, according to the room temperature X-ray diffraction results. The temperature dependence of X-ray diffraction experiments were also performed to study the melting processes of P3ATs. With the increase in the number of carbon atoms in alkyl side chains, the melting point decreases, and the thermal stability decreases too. The results of both FTIR and W-VIS spectra indicate that the conjugation length of P3DDT is the longest. among the three P3ATs. (C) 2001 Elsevier Science B.V. All rights reserved.

Study on a comb-like polymer electrolyte based on the backbone of ethylene-maleic anhydride copolymer

A comb-like polymer host(CBPE) as polymer electrolyte was synthesized by reacting poly(ethylene glycol) monomethyl ether (PEGME) with ethylene-maleic anhydride copolymer(EMAC) and endcapping the residual carboxylic acid with methanol. The synthetic process was followed by IR and the amorphous product characterized by IR and elemental analysis. There were two peaks in the plot of the ionic conductivity against Li salt concentration. The plot of log sigma vs. 1/(T - T-0) may exhibit dual VTF behavior when using the glass transition temperature of PEO of side chain as T-0. The comb-like polymer is a white rubbery solid which dissolves in acetone. (C) 1998 Elsevier Science B.V. All rights reserved.

Synthesis and investigation of monoesters of polymaleic acids with azo-group

A series of amphiphilic polymers, monoesters of polymaleic acid containing ate-side groups (PMAN-A(n)Me) was synthesized by the reaction of alcohol(A,Me) with polymaleic anhydride (PMAN) for Langmuir-Blodgett assembly. The effects of the length of flexible spacer in the side chain on the pi-A isotherms and LB films were investigated. The UV-Vis and infrared linear dichroism spectra showed that the ate-side groups were highly oriented in PMAN-A(6)Me LB film deposited on silica or CaF2 substrate.

The relation between molecular motion and ion conductivity on a new comblike polymer

A new amorphous comblike polymer(CBP) based on methylvinyl ether/maleic anhydride alternating copolymer backbone and on oligooxyethylene side chain was synthesized The dynamic mechanical properties of CBP-Li salt complexes showed that there were two glass transitions. There are two peaks in the plot of the ionic conductivity vs. Li salt concentration. The plot of Log sigma against 1/(T-To) shows an unusual dual VTF behavior when using sidechain glass transition temperature (T-beta) as To.

LIQUID-CRYSTALLINE POLYSURFACTANT

A new kind of amphiphilic polymer(PAMC(16)B) has been synthesized where the amphiphilic moiety is attached as a side chain via the hydrophilic end to the polymer backbone. DSC, POM, and WAXD study revealed that the polysurfactant formed thermotropic liquid crystalline phase. The liquid crystalline domains appeared after annealed at the melt for a period of time, and evolved with annealing. It was indicated that the thermodynamic effect played a significant role on the self-aggregation of hydrophobic ends, so as to form liquid crystalline structure. X-ray investigation suggested that the mesophase structure could be described as smectic with lamellar type of packing, in which alkyl tails aggregated to form layer, A model of supermolecular structure was given.

ULTRASTRUCTURE OF LIQUID-CRYSTALLINE POLYACRYLATES CONTAINING P-NITRO AZOBENZENE

The phase behaviour ai the side chain liquid crystalline polyacrylates containing p-nitro azobenzene was studied bg DSC, WAXD and the polarized optical microscopy. It was shown that nematic phase can be formed for homopolymer HP6, no LC phase can be observed for HF3 and HP4; whereas smectic S-Ad phase can be obtained tor P-n when n was equal to 3,4, 6,8. The unique phase behaviour of the copolymers P-n was due to the existence of H bond between -COOH and -NO2 which lias been confirmed by FTIR. The molecular arrangement of the copolymers in their LC states was proposed from the results of WAXD and FTIR.

HOST-GUEST INTERACTIONS OF THIAMINE WITH ANIONS - CRYSTAL-STRUCTURE OF THIAMINE IODIDE SESQUIHYDRATE

The crystal structure of thiamine iodide sesquihydrate has been determined by X-ray diffraction methods as a host-guest model for coenzyme-substrate interactions. The asymmetric unit contains two chemical units. Both the thiamine molecules A and B, which are crystallographically independent, assume the usual F conformation and have a disordered hydroxyethyl side chain. An iodide anion (or a water molecule) bridges the pyrimidine and thiazolium rings of molecule A (or B) by forming a hydrogen bond with the amino group and an electrostatic contact with the thiazolium ring to stabilize the molecular conformation. In the crystal the thiamine molecules self-associate to form a pipe-like polymeric structure, in which four thiamine hosts surround an iodide guest and hold it through C(2)-H...I hydrogen bonds and thiazolium...I electrostatic interactions. Crystal data: C12H17N4OS+.I- . 1.5 H2O, monoclinic, P2(1)/c, a = 12.585(2), b = 25.303(5), c = 12.030(2) angstrom, beta = 115.15(1)degrees, V = 3468(1) angtrom3, Z = 8, D(c) = 1.606 g cm-3, R = 0.045 for 3328 observed reflections.

A NOVEL METAL THIAMINE COMPLEX WITH A CYCLIC DIMER FORMED BY METAL-BRIDGED 2 THIAMINE LIGANDS - CRYSTAL-STRUCTURE OF [MN(THIAMINE)CL2(H2O)]2[THIAMINE]2CL4.2H2O

The crystal structure of [Mn(thiamine)Cl2(H2O)]2[thiamine]2Cl4.2H2O has been determined by X-ray diffraction methods. The compound contains a cyclic dimer of a complex cation with two thiamine ligands bridged by two Mn(II) ions across a crystallographic center of symmetry. Each Mn(II) is coordinated by two chloride atoms, a water molecule, a N(1') atom of the pyrimidine from a thiamine and an O(53) atom of the hydroxyethyl side chain from another thiamine. There are two free-base thiamine molecules related by a center of symmetry in the unit cell, which form a base-pair through the hydrogen bonds. Both the independent thiamine molecules in the asymmetric unit assume the common F conformation with phi-T = 10.0(9) and 3.6(10) and phi-P = 85.6(7) and 79.6(7), respectively. The compound provides a possible model for a metal-bridged enzyme-coenzyme complex in thiamine catalysis. Crystallographic data: triclinic, space group P1BAR, a = 12.441(4), b = 13.572(4), c = 11.267(3) angstrom, alpha = 103.15(2), beta 89.03(3), gamma = 115.64(2)-degrees, Z = 1, D(calc) = 1.524 g cm-3, and R = 0.050 for 3019 observed reflections with I > 3-sigma(I).

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes

Similarly to protein folding, the association of two proteins is driven by a free energy funnel, determined by favorable interactions in some neighborhood of the native state. We describe a docking method based on stochastic global minimization of funnel-shaped energy functions in the space of rigid body motions (SE(3)) while accounting for flexibility of the interface side chains. The method, called semi-definite programming-based underestimation (SDU), employs a general quadratic function to underestimate a set of local energy minima and uses the resulting underestimator to bias further sampling. While SDU effectively minimizes functions with funnel-shaped basins, its application to docking in the rotational and translational space SE(3) is not straightforward due to the geometry of that space. We introduce a strategy that uses separate independent variables for side-chain optimization, center-to-center distance of the two proteins, and five angular descriptors of the relative orientations of the molecules. The removal of the center-to-center distance turns out to vastly improve the efficiency of the search, because the five-dimensional space now exhibits a well-behaved energy surface suitable for underestimation. This algorithm explores the free energy surface spanned by encounter complexes that correspond to local free energy minima and shows similarity to the model of macromolecular association that proceeds through a series of collisions. Results for standard protein docking benchmarks establish that in this space the free energy landscape is a funnel in a reasonably broad neighborhood of the native state and that the SDU strategy can generate docking predictions with less than 5 � ligand interface Ca root-mean-square deviation while achieving an approximately 20-fold efficiency gain compared to Monte Carlo methods.

Visible Volume: a Robust Measure for Protein Structure Characterization

We propose a new characterization of protein structure based on the natural tetrahedral geometry of the β carbon and a new geometric measure of structural similarity, called visible volume. In our model, the side-chains are replaced by an ideal tetrahedron, the orientation of which is fixed with respect to the backbone and corresponds to the preferred rotamer directions. Visible volume is a measure of the non-occluded empty space surrounding each residue position after the side-chains have been removed. It is a robust, parameter-free, locally-computed quantity that accounts for many of the spatial constraints that are of relevance to the corresponding position in the native structure. When computing visible volume, we ignore the nature of both the residue observed at each site and the ones surrounding it. We focus instead on the space that, together, these residues could occupy. By doing so, we are able to quantify a new kind of invariance beyond the apparent variations in protein families, namely, the conservation of the physical space available at structurally equivalent positions for side-chain packing. Corresponding positions in native structures are likely to be of interest in protein structure prediction, protein design, and homology modeling. Visible volume is related to the degree of exposure of a residue position and to the actual rotamers in native proteins. In this article, we discuss the properties of this new measure, namely, its robustness with respect to both crystallographic uncertainties and naturally occurring variations in atomic coordinates, and the remarkable fact that it is essentially independent of the choice of the parameters used in calculating it. We also show how visible volume can be used to align protein structures, to identify structurally equivalent positions that are conserved in a family of proteins, and to single out positions in a protein that are likely to be of biological interest. These properties qualify visible volume as a powerful tool in a variety of applications, from the detailed analysis of protein structure to homology modeling, protein structural alignment, and the definition of better scoring functions for threading purposes.

The synthesis and biological evaluation of lanostane and cholestane-type natural products

The main objective of this thesis is to outline the synthetic chemistry involved in the preparation of a range of novel lanostane and cholestane derivatives, and subsequent investigation into their biological activity in cancer cells. The biological results obtained throughout the project have driven the strategic synthesis of new compounds, in an effort to optimise the anti cancer potential of lanostane and cholestane derivatives. The first chapter begins with an overview of steroidal compounds and details a literature review of the natural sources of these moieties, as well as their biosynthesis and reported synthetic derivatives. The biological activity of interesting natural and synthetic analogues is also discussed. In addition, an insight into some currently prescribed pharmaceutical compounds, with functional groups relevant to this project, is presented. The second chapter discusses the methods employed for the synthesis of these novel lanostane and cholestane derivatives, and comprises three main sections. Firstly, various oxidation products of lanosterol are synthesised, mainly via epoxidations of the C-8,9 and C- 24,25 alkenes, and also allylic oxidations at these positions. Secondly, amine derivatives of lanosterol are formed by cleaving the lanostane side chain, thereby yielding a new cholestane nucleus, and performing several reductive aminations on the resulting key aldehyde intermediates. Various amines such as piperidine, morpholine, diethylamine and aniline are employed in the reductive amination reactions to yield novel cholestane steroids with amine side chains. Finally, starting from stigmasterol and proceeding with the same methodology of cleaving the steroidal side chain and subsequently performing reductive aminations, novel cholestane derivatives of the biologically active amines are synthesised. The cytotoxicity of these compounds against CaCo-2 and U937 cell lines is presented in terms of percentage viability of cells, IC50 value and apoptosis. The MTT assay is used to determine the percentage viability of cells, and the IC50 data is generated from the MTT results. Apoptosis is measured in terms of fold increase relative to a carrier control. In summary, the compounds formed are discussed in terms of chemical synthesis, spectroscopic interpretation and biological activity. The main reaction pathways involved in the chemistry within this project are various oxidations and reductive amination. The final chapter is a detailed account of the full experimental procedures for the compounds synthesised during this work, including characterisation using spectroscopic and analytical data.

Quantitative model of the phase behavior of recombinant pH-responsive elastin-like polypeptides.

Quantitative models are required to engineer biomaterials with environmentally responsive properties. With this goal in mind, we developed a model that describes the pH-dependent phase behavior of a class of stimulus responsive elastin-like polypeptides (ELPs) that undergo reversible phase separation in response to their solution environment. Under isothermal conditions, charged ELPs can undergo phase separation when their charge is neutralized. Optimization of this behavior has been challenging because the pH at which they phase separate, pHt, depends on their composition, molecular weight, concentration, and temperature. To address this problem, we developed a quantitative model to describe the phase behavior of charged ELPs that uses the Henderson-Hasselbalch relationship to describe the effect of side-chain ionization on the phase-transition temperature of an ELP. The model was validated with pH-responsive ELPs that contained either acidic (Glu) or basic (His) residues. The phase separation of both ELPs fit this model across a range of pH. These results have important implications for applications of pH-responsive ELPs because they provide a quantitative model for the rational design of pH-responsive polypeptides whose transition can be triggered at a specified pH.

Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms.

X-ray crystallography is the predominant method for obtaining atomic-scale information about biological macromolecules. Despite the success of the technique, obtaining well diffracting crystals still critically limits going from protein to structure. In practice, the crystallization process proceeds through knowledge-informed empiricism. Better physico-chemical understanding remains elusive because of the large number of variables involved, hence little guidance is available to systematically identify solution conditions that promote crystallization. To help determine relationships between macromolecular properties and their crystallization propensity, we have trained statistical models on samples for 182 proteins supplied by the Northeast Structural Genomics consortium. Gaussian processes, which capture trends beyond the reach of linear statistical models, distinguish between two main physico-chemical mechanisms driving crystallization. One is characterized by low levels of side chain entropy and has been extensively reported in the literature. The other identifies specific electrostatic interactions not previously described in the crystallization context. Because evidence for two distinct mechanisms can be gleaned both from crystal contacts and from solution conditions leading to successful crystallization, the model offers future avenues for optimizing crystallization screens based on partial structural information. The availability of crystallization data coupled with structural outcomes analyzed through state-of-the-art statistical models may thus guide macromolecular crystallization toward a more rational basis.