Education and research - the "El Niño" years

From a special issue: A Brief History of the Charles Darwin Foundation for the Galapagos Islands 1959-1988

Early life history of the Argentine sandperch Pseudopercis semifasciata (Pinguipedidae) off northern Patagonia

The Argentine sandperch Pseudopercis semifasciata (Pinguipedidae) sustains an important commercial and recreational fishery in the northern Patagonian gulfs of Argentina. We describe the morphological features of larvae and posttransition juveniles of P. semifasciata and analyze the abundance and distribution of early life-history stages obtained from 19 research cruises conducted on the Argentine shelf between 1978 and 2001. Pseudopercis semifasciata larvae were distinguished from other larvae by the modal number of myomeres (between 36 and 38), their elongated body, the size of their gut, and by osteological features of the neuro- and branchiocranium. Pseudopercis semifasciata and Pinguipes brasilianus (the other sympatric species of pinguipedid fishes) posttransition juveniles were distinguished by their head shape, pigmentation pattern, and by the number of spines of the dorsal fin (five in P. semifasciata and seven in P. brasilianus). The abundance and distribution of P. semifasciata at early stages indicate the existence of at least three offshore reproductive grounds between 42−43°S, 43−44°S, and 44−45°S, and a delayed spawning pulse in the southern stocks.

History of Alaska Red King Crab, Paralithodes camtschaticus, Bottom Trawl Surveys, 1940–61

Thirteen bottom trawl surveys conducted in Alaska waters for red king crab, Paralithodes camtschaticus, during 1940–61 are largely forgotten today even though they helped define our current knowledge of this resource. Government publications on six exploratory surveys (1940–49, 1957) included sample locations and some catch composition data, but these documents are rarely referenced. Only brief summaries of the other seven annual (1955–61) grid-patterned trawl surveys from the eastern Bering Sea were published. Although there have been interruptions in sampling and some changes in the trawl survey methods, a version of this grid-patterned survey continues through the present day, making it one of the oldest bottom-trawl surveys in U.S. waters. Unfortunately, many of the specific findings made during these early efforts have been lost to the research community. Here, we report on the methods, results, and significance of these early surveys, which were collated from published reports and the unpublished original data sheets so that researchers might begin incorporating this information into stock assessments, ecosystem trend analyses, and perhaps even revise the baseline population distribution and abundance estimates.

Government-Industry Cooperative Fisheries Research in the North Pacific under the MSFCMA

The National Marine Fisheries Service’s Alaska Fisheries Science Center (AFSC) has a long and successful history of conducting research in cooperation with the fishing industry. Many of the AFSC’s annual resource assessment surveys are carried out aboard chartered commercial vessels and the skill and experience of captains and crew are integral to the success of this work. Fishing companies have been contracted to provide vessels and expertise for many different types of research, including testing and evaluation of survey and commercial fishing gear and development of improved methods for estimating commercial catch quantity and composition. AFSC scientists have also participated in a number of industry-initiated research projects including development of selective fishing gears for bycatch reduction and evaluating and improving observer catch composition sampling. In this paper, we describe the legal and regulatory provisions for these types of cooperative work and present examples to illustrate the process and identify the requirements for successful cooperative research.

The U.S. Fish Commission Steamer Albatross: A History (Papers from a Symposium)

At her launch on 19 October 1882 in Wilmington, Del., the Albatross was the world’s first large deep-sea oceanographic and fisheries research vessel, and she would go on to have a distinguished 40-year career, ranging from the north Atlantic Ocean to the Gulf of Mexico, around Cape Horn in 1887–88, and into the North Pacific. By 1908, Deputy Fish Commissioner Hugh M. Smith reported that “The Albatross has contributed more to the knowledge of marine biology than has any other vessel.” And, of course, her career continued for another 13 years, being decommissioned in late 1921, serving later as a training vessel for nautical cadets, and disappearing from the records in Hamburg, Germany, in late 1928.

The Status of Queen Conch, Strombus gigas, Research in the Caribbean

Today there are approximately 230 published scientific papers on queen conch, Strombus gigas. Publication on this species began in the 1960's and increased rapidly during the 1980's and 1990's (Fig. 1). The increase in publication after 1980 was associated with three particular areas ofendeavor. First, many articles were published to document the rapid depletion of conch stocks throughout the Caribbean Sea. Second, substantial progress was made in understanding processes related to growth, mortality, and reproduction in queen conch. Third, because of the apparent and widespread decline in conch, several research laboratories, especially in Florida, Puerto Rico, Venezuela, and the Turks and Caicos Islands began experiments related to hatchery production of juvenile conch. The primary intent was to replenish wild stocks by releasing hatchery-reared animals. Today, hatchery production has been relatively well perfected, and the increase in numbers of scientific papers related specifically to culture has slowed. A thorough review of the history of conch mariculture was provided by Creswell (1994), and Davis (1994) summarized the details of larval culture technique.

The History and Literature of America's Oysters

Historically, America's use and enjoyment of the oyster extend far back into prehistoric times. The Native Americans often utilized oysters, more intensively in some areas than in others, and, at least in some areas of the Caribbean and Pacific coast, the invading Spanish sought oysters as eagerly as they did gold-but for the pearls. That was the pearl oyster, Pinctada sp., and signs of its local overexploitation were recorded early in the 16th century. During the 1800's, use of the eastern oyster grew phenomenally and, for a time, it outranked beef as a source of protein in some parts of the nation. Social events grew up around it, as it became an important aspect of culture and myth. Eventually, research on the oyster began to blossom, and scientific literature on the various species likewise bloomed-to the extent that when the late Paul Galtsoff wrote his classic treatise "The American oyster Crassostrea virginica Gmelin" in 1954, he reported compiling an extensive bibliography of over 6,000 subject and author cards on oysters and related subjects which he deposited in the library of the Woods Hole Laboratory of the Bureau of Commercial Fisheries (now NMFS). That large report, volume 64 (480 pages) of the agency's Fishery Bulletin, was a bargain at $2.75, and it has been a standard reference ever since. But the research and the attendant literature have grown greatly since Galtsoff's work was published, and now that has been thoroughly updated.

Centennial Lecture I: History and Contributions of the Woods Hole Fisheries Laboratory

The genesis and the early history of the Woods Hole Laboratory (WHL), to a lesser extent the Marine Biological Laboratory (MBL), and to some degree the Woods Hole Oceanographic Institution (WHOI), were elegantly covered by Paul S. Galtsoff (1962) in his BCF Circular "The Story of the Bureau of Commercial Fisheries Biological Laboratory, Woods Hole, Massachusetts." It covers the period from the beginning in 1871 to 1958. Galtsoffs more than 35-year career in the fishery service was spent almost entirely in Woods Hole. I will only briefly touch on that portion of the Laboratory's history covered by Galtsoff. Woods Hole, as a center of marine science, was conceived and implemented largely by one man, Spencer Fullerton Baird, at that time Assistant Secretary of the Smithsonian and who was also instrumental in the establishment of the National Museum and Permanent Secretary of the newly established American Association for the Advancement of Science. He was appointed by President Ulysses S. Grant in 1871 as the first U.S. Commissioner of Fisheries. Fisheries research began here as early as 1871, but a permanent station did not exist until 1885.

Report of 2009 Bottlenose Dolphin (Tursiops truncatus) Life History Workshop: expanding network capabilities

The Virginia Aquarium & Marine Science Center Foundation’s Stranding Response Program (VAQS) was awarded a grant in 2008 to conduct life history analysis on over 10 years of Tursiops truncatus teeth and gonad samples from stranded animals in Virginia. A major part of this collaborative grant included a workshop involving life historians from Hubbs-Sea World Research Institute (HSWRI), NOS, Texas A & M University (TAMU), and University of North Carolina Wilmington (UNCW). The workshop was held at the NOAA Center for Coastal Environmental Health & Biomolecular Research in Charleston, SC on 7-9 July 2009. The workshop convened to 1) address current practices among the groups conducting life history analysis, 2) decide on protocols to follow for the collaborative Prescott grant between VAQS and HSWRI, 3) demonstrate tissue preparation techniques and discuss shortcuts and pitfalls, 4) demonstrate data collection from prepared testes, ovaries, and teeth, and 5) discuss data analysis and prepare an outline and timeline for a future manuscript. The workshop concluded with discussions concerning the current collaborative Tursiops Life History Prescott grant award and the beginnings of a collaborative Prescott proposal with members of the Alliance of Marine Mammal Parks and Aquariums to further clarify reproductive analyses. This technical memorandum serves as a record of this workshop.

National Centers for Coastal Ocean Science (NCCOS) research highlights in the Chesapeake Bay

The Chesapeake Bay is the largest estuary in the United States. It is a unique and valuable national treasure because of its ecological, recreational, economic and cultural benefits. The problems facing the Bay are well known and extensively documented, and are largely related to human uses of the watershed and resources within the Bay. Over the past several decades as the origins of the Chesapeake’s problems became clear, citizens groups and Federal, State, and local governments have entered into agreements and worked together to restore the Bay’s productivity and ecological health. In May 2010, President Barack Obama signed Executive Order number 13508 that tasked a team of Federal agencies to develop a way forward in the protection and restoration of the Chesapeake watershed. Success of both State and Federal efforts will depend on having relevant, sound information regarding the ecology and function of the system as the basis of management and decision making. In response to the executive order, the National Oceanic and Atmospheric Administration’s National Centers for Coastal Ocean Science (NCCOS) has compiled an overview of its research in Chesapeake Bay watershed. NCCOS has a long history of Chesapeake Bay research, investigating the causes and consequences of changes throughout the watershed’s ecosystems. This document presents a cross section of research results that have advanced the understanding of the structure and function of the Chesapeake and enabled the accurate and timely prediction of events with the potential to impact both human communities and ecosystems. There are three main focus areas: changes in land use patterns in the watershed and the related impacts on contaminant and pathogen distribution and concentrations; nutrient inputs and algal bloom events; and habitat use and life history patterns of species in the watershed. Land use changes in the Chesapeake Bay watershed have dramatically changed how the system functions. A comparison of several subsystems within the Bay drainages has shown that water quality is directly related to land use and how the land use affects ecosystem health of the rivers and streams that enter the Chesapeake Bay. Across the Chesapeake as a whole, the rivers that drain developed areas, such as the Potomac and James rivers, tend to have much more highly contaminated sediments than does the mainstem of the Bay itself. In addition to what might be considered traditional contaminants, such as hydrocarbons, new contaminants are appearing in measurable amounts. At fourteen sites studied in the Bay, thirteen different pharmaceuticals were detected. The impact of pharmaceuticals on organisms and the people who eat them is still unknown. The effects of water borne infections on people and marine life are known, however, and the exposure to certain bacteria is a significant health risk. A model is now available that predicts the likelihood of occurrence of a strain of bacteria known as Vibrio vulnificus throughout Bay waters.

East African Inland Fisheries Research Organization Annual Report for year ended 31st December 1949

The present work is now concentrated mainly on the Tilapia fishery. As a result of past experience it is easier to direct efforts in a way likely to give useful results. Work on the Tilapia is now beyond the purely exploratory stage and these fishing experiments are being carried but in areas which are known to contain large numbers of Tilapia. Nets of different mesh size are being used in order to catch all stages of these fish. These nets are being fished at the surface and at the bottom, close to the shore and further out. The data collected should provide more precise information regarding the periodic migration, both vertical and horizontal, of these fish, a better understanding of their life history and breeding habits, and indicate' the potential possibilities of this fishery. These data should explain the variation in numbers of fish caught by Africans during different months of the year; they should also make it possible to determine more exactly the best type of net for use in this particular fishery.

The history and fishery potential of Kisoro Minor Lakes part two: Preliminary survey of Lakes Mutanda and Mulehe fisheries 

The fisheries of Lakes Mutanda and Mulehe during 1998/9 were mainly at subsistence scale and only few fishers operated at irregular intervals. The commercial catch records between 1963 to 1999 showed that Lake Mulehe was landing more fish than Lake Mutanda despite the fact that Lake Mutanda (26.4 km2) was bigger than Lake Mulehe (4.11 cm2). The constant decline of catches was due to irregular restocking and applying low stocking densities of fry. However, restocking should consider using species that withstand low temperature (15-240C) in the district. These include Oreochromis niloticus (Nile tilapia), Macropterus salmoides (Black bass), and Cyprinus carpio (Common carp). Most of these species have either disappeared or declined to very low levels. Due to lack of commercial fish species for harvest, the fishers by 1998/9 resorted to harvesting the haplochromines, Clarias carsoni and edible frogs (Xenopus kigesiensis) as alternative resources. Experimental studies have shown the need and techniques to enhance fish production on these two lakes.

Reciprocal chromosome painting illuminates the history of genome evolution of the domestic cat, dog and human

Domestic cats and dogs are important companion animals and model animals in biomedical research. The cat has a highly conserved karyotype, closely resembling the ancestral karyotype of mammals, while the dog has one of the most extensively rearranged mammalian karyotypes investigated so far. We have constructed the first detailed comparative chromosome map of the domestic dog and cat by reciprocal chromosome painting. Dog paints specific for the 38 autosomes and the X chromosomes delineated 68 conserved chromosomal segments in the cat, while reverse painting of cat probes onto red fox and dog chromosomes revealed 65 conserved segments. Most conserved segments on cat chromosomes also show a high degree of conservation in G-banding patterns compared with their canine counterparts. At least 47 chromosomal fissions (breaks), 25 fusions and one inversion are needed to convert the cat karyotype to that of the dog, confirming that extensive chromosome rearrangements differentiate the karyotypes of the cat and dog. Comparative analysis of the distribution patterns of conserved segments defined by dog paints on cat and human chromosomes has refined the human/cat comparative genome map and, most importantly, has revealed 15 cryptic inversions in seven large chromosomal regions of conserved synteny between humans and cats.

Management of the nile perch, Lates niloticus, fishery in Lake Victoria in light of the changes in its life history characteristics

Nile perch, Lates niloticus Linnaeus, 1758, is a predatory fish of high commercial and recreational value. It can grow to a length of 2 m and a weight of 200 kg. In Uganda, Nile perch was originally found only in Lake Albert and the River Nile below Murchison Falls. The species is, however, widely distributed in Africa, occurring in the Nile system below Murchison Falls, the Congo, Niger, Volta, Senegal and in Lakes Chad and Turkana (Greenwood 1966).