Bach's cello suites transcription and interpretation for baritone saxophone

Bach’s Suites for unaccompanied cello are a masterpiece of the Classical Western canon for their singularity and their creator’s mastery. A myriad of transcriptions were made throughout the centuries with bigger or lesser freedom. This thesis aims at revealing insights from the art of linear polyphony and its performance on a monophonic instrument such as the baritone saxophone. The study of the musical structure is supported by examples from the visual domain that help us to understand the notion of linear polyphony as a third-dimension object. The particularity of this study, in relation to the multiple existing literature about Bach’s music, is its focus on a wind player’s point of view, a saxophonist, which, given the restriction of the polyphonic possibilities of the instrument, reveals some discerning solutions on the performance, analysis and elaboration of the polyphonic thinking in Bach’s Suites. Similar to the relative novelty of the cello at Bach’s time, my work aims at giving as close as possible the same perspective of the music through a new vision and instrument. I analysed the art of linear polyphony and the techniques of elaboration of the melody in the Cello Suites, notably as a means to support the interpretation (e.g. articulation, phrasing, dynamics, vibrato, fingerings, etc.) and to devise a transcription of the Suites for the baritone saxophone. My choice felled on a transcription for baritone saxophone based on the manuscript from Anna Magdalena Bach, wishing to provide detailed guidelines for saxophonists who want to create a more informed interpretation. I hope to offer a better understanding of these works and to provide a reference to build and develop an individual interpretation, especially on the baritone saxophone.

Control design for multicast-aware class-based networks

The expectations of citizens from the Information Technologies (ITs) are increasing as the ITs have become integral part of our society, serving all kinds of activities whether professional, leisure, safety-critical applications or business. Hence, the limitations of the traditional network designs to provide innovative and enhanced services and applications motivated a consensus to integrate all services over packet switching infrastructures, using the Internet Protocol, so as to leverage flexible control and economical benefits in the Next Generation Networks (NGNs). However, the Internet is not capable of treating services differently while each service has its own requirements (e.g., Quality of Service - QoS). Therefore, the need for more evolved forms of communications has driven to radical changes of architectural and layering designs which demand appropriate solutions for service admission and network resources control. This Thesis addresses QoS and network control issues, aiming to improve overall control performance in current and future networks which classify services into classes. The Thesis is divided into three parts. In the first part, we propose two resource over-reservation algorithms, a Class-based bandwidth Over-Reservation (COR) and an Enhanced COR (ECOR). The over-reservation means reserving more bandwidth than a Class of Service (CoS) needs, so the QoS reservation signalling rate is reduced. COR and ECOR allow for dynamically defining over-reservation parameters for CoSs based on network interfaces resource conditions; they aim to reduce QoS signalling and related overhead without incurring CoS starvation or waste of bandwidth. ECOR differs from COR by allowing for optimizing control overhead minimization. Further, we propose a centralized control mechanism called Advanced Centralization Architecture (ACA), that uses a single state-full Control Decision Point (CDP) which maintains a good view of its underlying network topology and the related links resource statistics on real-time basis to control the overall network. It is very important to mention that, in this Thesis, we use multicast trees as the basis for session transport, not only for group communication purposes, but mainly to pin packets of a session mapped to a tree to follow the desired tree. Our simulation results prove a drastic reduction of QoS control signalling and the related overhead without QoS violation or waste of resources. Besides, we provide a generic-purpose analytical model to assess the impact of various parameters (e.g., link capacity, session dynamics, etc.) that generally challenge resource overprovisioning control. In the second part of this Thesis, we propose a decentralization control mechanism called Advanced Class-based resource OverpRovisioning (ACOR), that aims to achieve better scalability than the ACA approach. ACOR enables multiple CDPs, distributed at network edge, to cooperate and exchange appropriate control data (e.g., trees and bandwidth usage information) such that each CDP is able to maintain a good knowledge of the network topology and the related links resource statistics on real-time basis. From scalability perspective, ACOR cooperation is selective, meaning that control information is exchanged dynamically among only the CDPs which are concerned (correlated). Moreover, the synchronization is carried out through our proposed concept of Virtual Over-Provisioned Resource (VOPR), which is a share of over-reservations of each interface to each tree that uses the interface. Thus, each CDP can process several session requests over a tree without requiring synchronization between the correlated CDPs as long as the VOPR of the tree is not exhausted. Analytical and simulation results demonstrate that aggregate over-reservation control in decentralized scenarios keep low signalling without QoS violations or waste of resources. We also introduced a control signalling protocol called ACOR Protocol (ACOR-P) to support the centralization and decentralization designs in this Thesis. Further, we propose an Extended ACOR (E-ACOR) which aggregates the VOPR of all trees that originate at the same CDP, and more session requests can be processed without synchronization when compared with ACOR. In addition, E-ACOR introduces a mechanism to efficiently track network congestion information to prevent unnecessary synchronization during congestion time when VOPRs would exhaust upon every session request. The performance evaluation through analytical and simulation results proves the superiority of E-ACOR in minimizing overall control signalling overhead while keeping all advantages of ACOR, that is, without incurring QoS violations or waste of resources. The last part of this Thesis includes the Survivable ACOR (SACOR) proposal to support stable operations of the QoS and network control mechanisms in case of failures and recoveries (e.g., of links and nodes). The performance results show flexible survivability characterized by fast convergence time and differentiation of traffic re-routing under efficient resource utilization i.e. without wasting bandwidth. In summary, the QoS and architectural control mechanisms proposed in this Thesis provide efficient and scalable support for network control key sub-systems (e.g., QoS and resource control, traffic engineering, multicasting, etc.), and thus allow for optimizing network overall control performance.

Mining biomedical information from scientific literature

The rapid evolution and proliferation of a world-wide computerized network, the Internet, resulted in an overwhelming and constantly growing amount of publicly available data and information, a fact that was also verified in biomedicine. However, the lack of structure of textual data inhibits its direct processing by computational solutions. Information extraction is the task of text mining that intends to automatically collect information from unstructured text data sources. The goal of the work described in this thesis was to build innovative solutions for biomedical information extraction from scientific literature, through the development of simple software artifacts for developers and biocurators, delivering more accurate, usable and faster results. We started by tackling named entity recognition - a crucial initial task - with the development of Gimli, a machine-learning-based solution that follows an incremental approach to optimize extracted linguistic characteristics for each concept type. Afterwards, Totum was built to harmonize concept names provided by heterogeneous systems, delivering a robust solution with improved performance results. Such approach takes advantage of heterogenous corpora to deliver cross-corpus harmonization that is not constrained to specific characteristics. Since previous solutions do not provide links to knowledge bases, Neji was built to streamline the development of complex and custom solutions for biomedical concept name recognition and normalization. This was achieved through a modular and flexible framework focused on speed and performance, integrating a large amount of processing modules optimized for the biomedical domain. To offer on-demand heterogenous biomedical concept identification, we developed BeCAS, a web application, service and widget. We also tackled relation mining by developing TrigNER, a machine-learning-based solution for biomedical event trigger recognition, which applies an automatic algorithm to obtain the best linguistic features and model parameters for each event type. Finally, in order to assist biocurators, Egas was developed to support rapid, interactive and real-time collaborative curation of biomedical documents, through manual and automatic in-line annotation of concepts and relations. Overall, the research work presented in this thesis contributed to a more accurate update of current biomedical knowledge bases, towards improved hypothesis generation and knowledge discovery.

Network virtualisation from an operator perspective

Network virtualisation is seen as a promising approach to overcome the so-called “Internet impasse” and bring innovation back into the Internet, by allowing easier migration towards novel networking approaches as well as the coexistence of complementary network architectures on a shared infrastructure in a commercial context. Recently, the interest from the operators and mainstream industry in network virtualisation has grown quite significantly, as the potential benefits of virtualisation became clearer, both from an economical and an operational point of view. In the beginning, the concept has been mainly a research topic and has been materialized in small-scale testbeds and research network environments. This PhD Thesis aims to provide the network operator with a set of mechanisms and algorithms capable of managing and controlling virtual networks. To this end, we propose a framework that aims to allocate, monitor and control virtual resources in a centralized and efficient manner. In order to analyse the performance of the framework, we performed the implementation and evaluation on a small-scale testbed. To enable the operator to make an efficient allocation, in real-time, and on-demand, of virtual networks onto the substrate network, it is proposed a heuristic algorithm to perform the virtual network mapping. For the network operator to obtain the highest profit of the physical network, it is also proposed a mathematical formulation that aims to maximize the number of allocated virtual networks onto the physical network. Since the power consumption of the physical network is very significant in the operating costs, it is important to make the allocation of virtual networks in fewer physical resources and onto physical resources already active. To address this challenge, we propose a mathematical formulation that aims to minimize the energy consumption of the physical network without affecting the efficiency of the allocation of virtual networks. To minimize fragmentation of the physical network while increasing the revenue of the operator, it is extended the initial formulation to contemplate the re-optimization of previously mapped virtual networks, so that the operator has a better use of its physical infrastructure. It is also necessary to address the migration of virtual networks, either for reasons of load balancing or for reasons of imminent failure of physical resources, without affecting the proper functioning of the virtual network. To this end, we propose a method based on cloning techniques to perform the migration of virtual networks across the physical infrastructure, transparently, and without affecting the virtual network. In order to assess the resilience of virtual networks to physical network failures, while obtaining the optimal solution for the migration of virtual networks in case of imminent failure of physical resources, the mathematical formulation is extended to minimize the number of nodes migrated and the relocation of virtual links. In comparison with our optimization proposals, we found out that existing heuristics for mapping virtual networks have a poor performance. We also found that it is possible to minimize the energy consumption without penalizing the efficient allocation. By applying the re-optimization on the virtual networks, it has been shown that it is possible to obtain more free resources as well as having the physical resources better balanced. Finally, it was shown that virtual networks are quite resilient to failures on the physical network.

Ferroelectric : CNTs structures fabrication for advanced functional nano devices

This work is about the combination of functional ferroelectric oxides with Multiwall Carbon Nanotubes for microelectronic applications, as for example potential 3 Dimensional (3D) Non Volatile Ferroelectric Random Access Memories (NVFeRAM). Miniaturized electronics are ubiquitous now. The drive to downsize electronics has been spurred by needs of more performance into smaller packages at lower costs. But the trend of electronics miniaturization challenges board assembly materials, processes, and reliability. Semiconductor device and integrated circuit technology, coupled with its associated electronic packaging, forms the backbone of high-performance miniaturized electronic systems. However, as size decreases and functionalization increases in the modern electronics further size reduction is getting difficult; below a size limit the signal reliability and device performance deteriorate. Hence miniaturization of siliconbased electronics has limitations. On this background the Road Map for Semiconductor Industry (ITRS) suggests since 2011 alternative technologies, designated as More than Moore; being one of them based on carbon (carbon nanotubes (CNTs) and graphene) [1]. CNTs with their unique performance and three dimensionality at the nano-scale have been regarded as promising elements for miniaturized electronics [2]. CNTs are tubular in geometry and possess a unique set of properties, including ballistic electron transportation and a huge current caring capacity, which make them of great interest for future microelectronics [2]. Indeed CNTs might have a key role in the miniaturization of Non Volatile Ferroelectric Random Access Memories (NVFeRAM). Moving from a traditional two dimensional (2D) design (as is the case of thin films) to a 3D structure (based on a tridimensional arrangement of unidimensional structures) will result in the high reliability and sensing of the signals due to the large contribution from the bottom electrode. One way to achieve this 3D design is by using CNTs. Ferroelectrics (FE) are spontaneously polarized and can have high dielectric constants and interesting pyroelectric, piezoelectric, and electrooptic properties, being a key application of FE electronic memories. However, combining CNTs with FE functional oxides is challenging. It starts with materials compatibility, since crystallization temperature of FE and oxidation temperature of CNTs may overlap. In this case low temperature processing of FE is fundamental. Within this context in this work a systematic study on the fabrication of CNTs - FE structures using low cost low temperature methods was carried out. The FE under study are comprised of lead zirconate titanate (Pb1-xZrxTiO3, PZT), barium titanate (BaTiO3, BT) and bismuth ferrite (BiFeO3, BFO). The various aspects related to the fabrication, such as effect on thermal stability of MWCNTs, FE phase formation in presence of MWCNTs and interfaces between the CNTs/FE are addressed in this work. The ferroelectric response locally measured by Piezoresponse Force Microscopy (PFM) clearly evidenced that even at low processing temperatures FE on CNTs retain its ferroelectric nature. The work started by verifying the thermal decomposition behavior under different conditions of the multiwall CNTs (MWCNTs) used in this work. It was verified that purified MWCNTs are stable up to 420 ºC in air, as no weight loss occurs under non isothermal conditions, but morphology changes were observed for isothermal conditions at 400 ºC by Raman spectroscopy and Transmission Electron Microscopy (TEM). In oxygen-rich atmosphere MWCNTs started to oxidized at 200 ºC. However in argon-rich one and under a high heating rate MWCNTs remain stable up to 1300 ºC with a minimum sublimation. The activation energy for the decomposition of MWCNTs in air was calculated to lie between 80 and 108 kJ/mol. These results are relevant for the fabrication of MWCNTs – FE structures. Indeed we demonstrate that PZT can be deposited by sol gel at low temperatures on MWCNTs. And particularly interesting we prove that MWCNTs decrease the temperature and time for formation of PZT by ~100 ºC commensurate with a decrease in activation energy from 68±15 kJ/mol to 27±2 kJ/mol. As a consequence, monophasic PZT was obtained at 575 ºC for MWCNTs - PZT whereas for pure PZT traces of pyrochlore were still present at 650 ºC, where PZT phase formed due to homogeneous nucleation. The piezoelectric nature of MWCNTs - PZT synthesised at 500 ºC for 1 h was proved by PFM. In the continuation of this work we developed a low cost methodology of coating MWCNTs using a hybrid sol-gel / hydrothermal method. In this case the FE used as a proof of concept was BT. BT is a well-known lead free perovskite used in many microelectronic applications. However, synthesis by solid state reaction is typically performed around 1100 to 1300 ºC what jeopardizes the combination with MWCNTs. We also illustrate the ineffectiveness of conventional hydrothermal synthesis in this process due the formation of carbonates, namely BaCO3. The grown MWCNTs - BT structures are ferroelectric and exhibit an electromechanical response (15 pm/V). These results have broad implications since this strategy can also be extended to other compounds of materials with high crystallization temperatures. In addition the coverage of MWCNTs with FE can be optimized, in this case with non covalent functionalization of the tubes, namely with sodium dodecyl sulfate (SDS). MWCNTs were used as templates to grow, in this case single phase multiferroic BFO nanorods. This work shows that the use of nitric solvent results in severe damages of the MWCNTs layers that results in the early oxidation of the tubes during the annealing treatment. It was also observed that the use of nitric solvent results in the partial filling of MWCNTs with BFO due to the low surface tension (<119 mN/m) of the nitric solution. The opening of the caps and filling of the tubes occurs simultaneously during the refluxing step. Furthermore we verified that MWCNTs have a critical role in the fabrication of monophasic BFO; i.e. the oxidation of CNTs during the annealing process causes an oxygen deficient atmosphere that restrains the formation of Bi2O3 and monophasic BFO can be obtained. The morphology of the obtained BFO nano structures indicates that MWCNTs act as template to grow 1D structure of BFO. Magnetic measurements on these BFO nanostructures revealed a week ferromagnetic hysteresis loop with a coercive field of 956 Oe at 5 K. We also exploited the possible use of vertically-aligned multiwall carbon nanotubes (VA-MWCNTs) as bottom electrodes for microelectronics, for example for memory applications. As a proof of concept BiFeO3 (BFO) films were in-situ deposited on the surface of VA-MWCNTs by RF (Radio Frequency) magnetron sputtering. For in situ deposition temperature of 400 ºC and deposition time up to 2 h, BFO films cover the VA-MWCNTs and no damage occurs either in the film or MWCNTs. In spite of the macroscopic lossy polarization behaviour, the ferroelectric nature, domain structure and switching of these conformal BFO films was verified by PFM. A week ferromagnetic ordering loop was proved for BFO films on VA-MWCNTs having a coercive field of 700 Oe. Our systematic work is a significant step forward in the development of 3D memory cells; it clearly demonstrates that CNTs can be combined with FE oxides and can be used, for example, as the next 3D generation of FERAMs, not excluding however other different applications in microelectronics.

Contributos da educação em Geociências para o desenvolvimento: uma abordagem ao tempo geológico

Perante os desafios do mundo contemporâneo, marcado pela complexidade, pelo ritmo acelerado de mudança e pela incerteza, o desenvolvimento dos alunos como cidadãos cientificamente cultos é um fator crítico. Neste contexto, a educação em Geociências, em geral, e a compreensão do tempo geológico, em particular, podem contribuir para um aprofundamento da cultura científica e da responsabilidade do cidadão promotor do desenvolvimento sustentável, numa matriz Ciência/Tecnologia/Sociedade. Assim, com este estudo, pretende-se alcançar duas grandes finalidades: a) contribuir para o desenvolvimento de um quadro teórico e concetual, no âmbito da educação em geral e das Geociências em particular, visando o desenvolvimento dos alunos como cidadãos cientificamente cultos numa lógica de sustentabilidade; b) conceber, implementar e avaliar estratégias, fundamentadas no corpus de referência, no âmbito da Geologia no ensino secundário. Corresponde a uma investigação-ação desenvolvida pelo professor de Biologia e Geologia com alunos do 11.º ano e organizada em três fases: i) desenvolvimento de um quadro teórico de referência e concetual; ii) conceção, desenvolvimento e avaliação de uma intervenção didática iii) elaboração de uma proposta metodológica fundamentada para o aprofundamento de uma cultura científica que promova o desenvolvimento da sustentabilidade na Terra a partir do ensino do tempo geológico. Os resultados do estudo apontam para a importância de trabalhar de modo articulado os conceitos de tempo geológico e de desenvolvimento sustentável na formação de cidadãos cientificamente cultos, capazes de dar resposta às questões complexas da sociedade atual. Por outro lado, a análise da intervenção didática confirma a importância das atividades exteriores à sala de aula e do trabalho prático para o desenvolvimento da cidadania, em alunos do ensino secundário, e como facilitadoras da compreensão de conceitos complexos como o de tempo geológico.

Estudo da degradação do tempo de vida das fibras óticas e o seu impacte no desempenho das redes de comunicações

Este trabalho focou-se no estudo do impacte das condições ambientais, de instalação e de utilização na degradação da fibra ótica, que frequentemente resultam na redução do desempenho das fibras óticas. Entre este fatores, foram estudados os efeitos de ambientes agressivos para o revestimento da fibra, nomeadamente no tempo de vida e resistência. Foi também estudado o efeito da propagação de sinais óticos de elevadas potências em curvaturas apertadas e a sua influência na degradação do desempenho da fibra ótica. Ainda neste âmbito, foi também estudado o desempenho de fibras óticas insensíveis a curvtura e fibras dopadas com Érbio, sendo analisada a dinâmica do efeito rastilho nestas fibras. Como parte integrante das redes óticas, os conetores óticos são de extrema importância na sua estrutura. O seu desempenho será refletido na qualidade do serviço da rede, e por isso é determinante estudar os fatores que contribuem para a sua degradação e mau funcionamento. Assim, este trabalho apresenta um estudo do comportamento de conetores óticos perante situações de mau manuseamento (como são limpeza insuficiente e degradação física da face final). Em adição foi também dado ênfase à reutilização de fibra danificada pelo efeito rastilho no desenvolvimento de sensores, passíveis de serem utilizados na monitorização de índice de refração, pressão hidrostática, tensão ou alta temperatura. Este procedimento surge como uma solução de baixo custo para o desenvolvimento de sensores em fibra ótica a partir de fibra danificada e inutilizável para as suas habituais aplicações em transmissão e/ou reflexão de sinais óticos.

Eterno presente, o tempo na contemporaniedade

Tese dout., Literatura, Universidade do Algarve, 2008

Determinação dos genótipos de Listeria Monocytogenes por PCR em tempo real e avaliação da sua citopatogenicidade

Dissertação mest., Qualidade em Análises, Universidade do Algarve, 2007

O Gabinete de Desenvolvimento Rural da Câmara Municipal de Loulé: uma experiência lida à luz do conceito de desenvolvimento local

O presente texto é uma tentativa de sistematização da experiência do Gabinete de Desenvolvimento Rural, da Câmara Municipal de Loulé, que funcionou entre os anos de 1990 e 1995. Em Portugal ainda são raras as sistematizações de experiências práticas enquadradas no âmbito do desenvolvimento rural. Por um lado, devido ao facto de as práticas de desenvolvimento rural serem recentes no nosso país; por outro lado, porque decorrendo do factor anterior, se acentua a tentação do voluntarismo que promove a acção em detrimento da reflexão.

Estruturas industriais urbanas: o emergir de um novo conceito criativo no projecto de arquitectura paisagista

Dissertação de mest., Arquitectura Paisagista, Faculdade de Ciências e Tecnologia, Univ. do Algarve, 2011

Concepções de professores do 1º ciclo do ensino básico: o que eles declaram antes de abordarem o conceito de evaporação no âmbito do PFEEC

Este estudo tem por base, parte de uma investigação efectuada por um grupo de professores de vários níveis escolares: professores do 1º, 2º e 3º Ciclos do Ensino Básico (CEB) e do Ensino Superior. O principal propósito deste estudo foi analisar as concepções declaradas de oito professores do 1º CEB, participantes, pela primeira vez, no Programa de Formação de Professores do 1º CEB em Ensino Experimental das Ciências (PFEEC). O estudo foi realizado antes dos professores abordarem a temática Mudanças de Estado Físico no âmbito do PFEEC, centrando-se no ensino do conceito de Evaporação. Para se efectuar a análise dos documentos redigidos pelos professores, contemplando as suas concepções declaradas (designados por Radiografias da Prática), foi utilizado um Instrumento de Análise das Concepções dos Professores de Ensino Básico, no âmbito das Ciências da Natureza, de acordo com Monteiro (2006) e Monteiro et al. (2008). Neste estudo foram encontrados perfis de 5 professores manifestando uma tendência maioritariamente Espontaneísta, um exibido um perfil maioritário Tradicional e outro apresentando um perfil mais Tecnológico.

Diminuição do pico de cheia na rede de drenagem de águas pluviais através do sistema de aproveitamento de água da chuva

Dissertação de mest., Engenharia de Recursos Hídricos, Faculdade de Ciências e Tecnologia, Univ. do Algarve, 2010

O género e o auto-conceito: contributos para o estudo do papel do género na formação do auto-conceito

Dissertação de mest., Psicologia Clínica e da Saúde, Faculdade de Ciências Humanas e Sociais, Univ. do Algarve, 2010

Algoritmos evolutivos multiobjectivo para afectação de recursos e sua aplicação à geração de horários em universidades

Esta dissertação tem por objectivo aplicar algoritmos evolutivos multiobjectivo a problemas de afectação de recursos, particulamente a problemas de geração de horários de exames e problemas de geração de horários de aulas em Universidades. Estes problemas são normalmente caracterizados pela existência de múltiplos objectivos conflituosos. Neste sentido, uma formalização multiobjectivo para estes problemas é apresentada, com base no conceito de metas e prioridades. Vários aspectos dos algoritmos evolutivos são propostos e analisados para esta classe de problemas, nomeadamente, métodos de selecção e tipo e parâmetros de operadores de mutação. A escolha da representação e dos operadores utilizados é feita tendo em conta a necessidade de não privilegiar demasiadamente certos objectivos em relação a outros ao nível dos mecanismos de exploração. São apresentados estudos comparativos entre os algoritmos propostos por meio de métodos de inferência estatística em problemas reais na Universidade do Algarve. O conceito de função de aproveitamento é utilizado para avaliação de algoritmos evolutivos multiobjectivo. Finalmente, a análise da evolução do custo das soluções encontradas ao longo do tempo de execução através de funções de aproveitamento é apresentada.