Identificação molecular de nematóides de galhas, Meloidogyne spp.

2008

Detecção e identificação molecular de Xanthomonas spp. causadoras da mancha bacteriana do tomateiro.

Neste comunicado são relatados os procedimentos para a identificação molecular das quatro espécies de Xanthomonas associadas à mancha bacteriana do tomateiro.

Epidemiologia da sigatoka negra da bananeira (Musa spp).

Estudo sobre o progresso da sigatoka negra em bananeiras, associado a variacoes e/ou efeitos de variaveis climaticas, que permitem prever as epocas de maior severidade e/ou surtos da doenca, de forma a estabelecer estrategias de controle mais viaveis do ponto de vista economico-ambiental no Estado do Amazonas (Brasil).

Controle do Rhynchophorus palmarum na Amazônia por meio de armadilhas de bacabeira (Oenocarpus spp).

Pelo fato da bacabeira ser hospedeira do besouro e do nematóide e, de ser muito comum na Amazônia, procurou-se avaliar a eficiência de armadilhas desta palmeira como alternativa em substituição às de dendê. Testaram-se armadilhas de dendê, bacaba e banana quanto à eficiência na captura do besouro, entre fevereiro de 88 e janeiro de 89.

Avaliação do potencial de inóculo do Phytophthora spp em viveiros de citros.

1997

Subsídios técnicos para o manejo sustentável da unha-de-gato (Uncaria spp.) no Vale do Rio Juruá, AC.

Descrição das áreas de estudos; Descrição dos métodos; Descrição botânica, fitoquímica e farmacológica; Ecologia e biologia reprodutiva; Estrutura da população; forma de exploração e rendimento de casca; Baneficiamento do produto; Cronograma e ciclo da exploração; Monitoramento e mitigação do impacto ambiental.

Demandas tecnológicas para o sistema produtivo de borracha extrativa (Hevea spp.) no estado do Acre.

Este trabalho é parte do resultado do "Projeto Plataforma Tecnológica para o setor extrativista do estado do Acre".

Manual de identificação de doenças e fungos em Arachis spp.

Plantas do gênero Arachis são conhecidas da humanidade há cerca de 8 mil anos. O termo amendoim é originário de mãdu?bi, da língua tupi. As espécies forrageiras são comumente chamadas de amendoim forrageiro ou até grama amendoim no Brasil. A espécie Arachis pintoi Krapovickas & Gregory, exclusivamente forrageira, vem sendo cada vez mais usada para pastejo de animais devido à quantidade de proteínas e biomassa produzida, além do uso na jardinagem e paisagismo em áreas urbanas e rurais. Essa preferência pela espécie baseia-se em longo histórico de sucesso em outros países para a finalidade a que se destina. Outras espécies encontradas nesse gênero e utilizadas em programas de melhoramento genético de amendoim forrageiro para a produção de proteína a baixo custo são Arachis repens Handro, Arachis glabrata Benth., Arachis valsii Miotto, Arachis appressipila Krapov & W. C. Greg. e Arachis helodes Mart. ex Krapov. & Rigoni. Algumas doenças fúngicas afetam A. pintoi quando este se encontra estabelecido no campo ou em viveiro, casas de vegetação ou telado. No entanto, fungos que ocorrem nas sementes têm importante papel na disseminação de doença a longa distância e no estabelecimento de plantas de amendoim forrageiro no campo seja para multiplicação ou para uso definitivo. O conhecimento da diversidade de fungos fitopatogênicos e saprófitas que ocorrem em Arachis spp. é de fundamental relevância para os trabalhos de diagnósticos, para a emissão de certificados fitossanitários de origem, certificados fitossanitários, ações de defesa vegetal, segurança no trabalho e para o controle de doenças. Desse modo, foi elaborado este Manual que, além de ser um guia ilustrado para a identificação de doenças, também traz informações de como isolar e caracterizar taxonomicamente os fungos associados ao amendoim forrageiro. Esta publicação é destinada aos produtores, estudantes, professores, pesquisadores, técnicos e todos aqueles que se interessam pela cultura do amendoim forrageiro nos campos e nas cidades, em atividades produtivas, educacionais e de extensão.

Investigation of growth and stress tolerance characteristics of Cronobacter spp.

Cronobacter spp. are opportunistic pathogens which can be isolated from a wide variety of foods and environments. They are Gram negative, motile, non-spore forming, peritrichous rods of the Enterobacteriaceae family. This food-borne pathogen is associated with the ingestion of contaminated infant milk formula (IMF), causing necrotizing enterocolitis, sepsis and meningitis in neonatal infants. The work presented in this thesis involved the investigation and characterisation of a bank of Cronobacter strains for their ability to tolerate physiologically relevant stress conditions that are commonly encountered in the gastrointestinal tract. While all strains were able to endure the suboptimal conditions tested, noteworthy variations were observed between strains. A collection of these strains were Lux-tagged to determine if their growth could be tracked in IMF by measuring bioluminescence. The resulting strains could be easily and reproducibly monitored in real time by measuring light emission. Following this a transposon mutagenesis library was created in one of the Lux-tagged strains of Cronobacter sakazakii. This library was screened for mutants with affected growth in milk. The majority of mutants identified were associated with amino acid metabolism. The final section of this thesis identified genes involved in the tolerance of C. sakazakii to the milk derived antimicrobial peptide, Lactoferricin B (Lfcin B). This was achieved by creating a transposon mutagenesis library in C. sakazakii and screening for mutants with increased susceptibility to Lfcin B. Overall this thesis demonstrates the variation between Cronobacter strains. It also identifies genes required for growth of the bacteria in milk, as well as genes needed for antimicrobial peptide tolerance.

Aspects of the biology of Mya arenaria and Ensis spp. (Mollusca; Bivalvia) in the Irish Sea and adjacent areas

This study was undertaken to investigate the general biology, including the reproductive cycle and health status, of two clam taxa in Irish waters, with particular reference to the Irish Sea area. Monthly samples of the soft shell clam, Mya arenaria, were collected from Bannow Bay, Co. Wexford, Ireland, for sixteen months, and of the razor clam, Ensis spp. from the Skerries region (Irish Sea) between June 2010 and September 2011. In 2010, M. arenaria in Bannow Bay matured over the summer months, with both sexes either ripe or spawning by August. The gonads of both sexes of E. siliqua developed over autumn and winter 2010, with the first spawning individuals being recorded in January 2011. Two unusually cold winters, followed by a warmer than average spring, appear to have affected M. arenaria and E. siliqua gametogenesis at these sites. It was noted that wet weight of E. siliqua dropped significantly in the summer of both 2010 and 2011, after spawning, which may impact on the economic viability of fishing during this period. Additional samples of M. arenaria were collected at Flaxfort (Ireland), and Ensis spp. at Oxwich (Wales), and the pathology of all clams was examined using both histological and molecular methods. No pathogenic conditions were observed in M. arenaria while Prokaryote inclusions, trematode parasites, Nematopsis spp. and inflammatory pathologies were observed at low incidences in razor clams from Ireland but not from Wales; the first time these conditions have been reported in Ensis spp. in northern European waters. Mya arenaria from sites in Europe and eastern and western North America were investigated for genetic variation using both mitochondrial (cytochrome oxidase I (COI) and 16S ribosomal RNA genes) and nuclear markers (10 microsatellite loci). Both mitochondrial CO1 and all nuclear markers showed reduced levels of variation in certain European samples, with significant differences in haplotype and allelic composition between most samples, particularly those from the two different continents, but with the same common haplotypes or alleles throughout the range. The appearance of certain unique rare haplotypes and microsatellite alleles in the European samples suggest a complicated origin involving North American colonization but also possible southern European Pleistocene refugia. Specimens of Ensis spp. were obtained from five coastal areas around Ireland and Wales and species-specific PCR primers were used to amplify the internal transcribed spacer region 1 (ITS1) and the mitochondrial DNA CO1 gene and all but 15 razor clams were identified as Ensis siliqua. Future investigations should focus on continued monitoring of reproductive biology and pathology of the two clam taxa (in particular, to assess the influence of environmental change), and on genetics of southern European M. arenaria and sequencing the CO1 gene in Ensis individuals to clarify species identity

Parasites of wild howlers (Alouatta spp.)

A literature review of howler parasites provides the basis for an overview of the ecological significance of parasite surveys in primates. Within this framework, we have added insights into the interactions between primate hosts and their parasites from a long-term study in Costa Rica. We collected fecal samples from mantled howlers (Alouatta palliata) over a 9-year period (19861994 inclusive) and analyzed them for parasite eggs, larvae, cysts, and oocysts. We found many misperceptions inherent in the typical methodology of primate parasite surveys and in the reporting of the findings. Our work in Costa Rica suggests that a snapshot effect occurs with most surveys. A static view does not reflect the dynamic and changing ecological interaction between host and parasite. We describe some problems with parasite data analyses that emphasize the need for long-term longitudinal surveys in wild primate groups.

Working at the interface of phylogenetics and population genetics: a biogeographical analysis of Triaenops spp. (Chiroptera: Hipposideridae).

New applications of genetic data to questions of historical biogeography have revolutionized our understanding of how organisms have come to occupy their present distributions. Phylogenetic methods in combination with divergence time estimation can reveal biogeographical centres of origin, differentiate between hypotheses of vicariance and dispersal, and reveal the directionality of dispersal events. Despite their power, however, phylogenetic methods can sometimes yield patterns that are compatible with multiple, equally well-supported biogeographical hypotheses. In such cases, additional approaches must be integrated to differentiate among conflicting dispersal hypotheses. Here, we use a synthetic approach that draws upon the analytical strengths of coalescent and population genetic methods to augment phylogenetic analyses in order to assess the biogeographical history of Madagascar's Triaenops bats (Chiroptera: Hipposideridae). Phylogenetic analyses of mitochondrial DNA sequence data for Malagasy and east African Triaenops reveal a pattern that equally supports two competing hypotheses. While the phylogeny cannot determine whether Africa or Madagascar was the centre of origin for the species investigated, it serves as the essential backbone for the application of coalescent and population genetic methods. From the application of these methods, we conclude that a hypothesis of two independent but unidirectional dispersal events from Africa to Madagascar is best supported by the data.

Variabilidad genética de poblaciones de Melampsora spp. agente causal de la roya del álamo, en la zona del Delta Inferior del río Paraná

En la zona del Delta del Paraná, Argentina, el cultivo de álamo constituye el principal recurso productivo y económico. La roya del álamo, producida por especies de Melampsora spp., es la enfermedad fúngica de mayor importancia económica por su carácter epidemiológico. El cultivo de un limitado número de clones, altamente especializados y ecológicamente inestables, provocan la evolución de distintos patosistemas generando el reemplazo de ciertos clones por otros más resistentes. El objetivo de este trabajo fue estudiar la variabilidad genética molecular de la especie Melampsora, sobre 32 aislamientos de ejemplares pertenecientes a clones de Populus spp. durante los años 2007, 2008 y 2009, utilizando las técnicas de AFLPs y SSRs. La utilización de AFLPs permitió diferenciar 32 fenotipos moleculares, mostrando variabilidad genética en la población, mientras que a partir de la utilización de SSRs se confirmó la presencia de M. medusae y M. larici-populina en la zona de estudio. El análisis de agrupamientos (UPGMA) a partir de AFLPs permitió distinguir la cepa de Populus nigra del resto quedando como unidad aislada, a su vez se pudieron identificaron tres clusters de aislamientos provenientes de Populus deltoides, con tendencia a agruparse por origen genético y origen geográfico. El análisis de AMOVA confirmó las diferencias significativas para dichos agrupamientos. Los resultados del presente estudio confirman la existencia de variabilidad genética para los marcadores

Caza y comercio de cueros de Tupinambis spp. en un departamento de la provincia de San Luis y la relación con los mercados mundiales y las políticas de conservación

p.187-196

Estudios sobre la infección de raíces de trigo (Triticum aestivum) por Azospirillum spp.

p.283-289