North-eastern Morocco: a high geothermal prospect.

New temperature data obtained in 2007 in a hydrogeological borehole (1100 m deep) near Berkane have revealed an average geothermal gradient of about 126°C/km at depths greater than 300 m. This result confirms the average geothermal gradient estimated in a mining borehole located about 30km west of the Berkane borehole, in which water with temperatures as high as 96°C was reached at a depth of about 700 m. The new geothermal gradient, exceeding by far the ones already determined for this Moroccan area allows thinking about the possibility of programs for using high temperature waters in north-eastern Morocco.

Molecular survey and genetic characterization of tick-borne pathogens in dogs in metropolitan Recife (north-eastern Brazil).

To identify DNA of the main tick-borne pathogens in dogs from Recife (Brazil), polymerase chain reactions were carried out on blood samples of dogs treated at the Veterinary Hospital of the Universidade Federal Rural de Pernambuco from March 2007 to June 2008. The detection of DNA was performed using specific primers. Amplicons were analyzed through electrophoresis and sequencing. A phylogenetic tree was constructed using the UPGMA method, revealing that the sequences were closely related to those of strains from other geographic regions. Among the 205 blood samples analyzed, 48.78% was positive for Anaplasma platys; 38.04% was positive for Ehrlichia canis; 7.31% was positive for Babesia canis vogeli; and 0.49% was positive for Hepatozoon canis and Mycoplasma haemocanis. Coinfection of two or three pathogens was found in 23.9% (49/205) of the dogs. The subspecies B. canis vogeli was identified. Infection by H. canis and M. haemocanis is reported for the first time in dogs in the state of Pernambuco (Brazil). The data indicate that the main tick-borne pathogens in dogs in this region are E. canis and/or A. platys, followed by B. canis vogeli.

Patterns of Cactaceae species distribution in a protected area in the semiarid caatinga biome of North-Eastern Brazil.

2016

Analysis of the Variability of Carbonate System Parameters in the North-East Atlantic.

The purpose of this thesis is to analyse the spatial and temporal variability of the aragonite saturation state (ΩAR), commonly used as an indicator of ocean acidification, in the North-East Atlantic. When the aragonite saturation state decreases below a certain threshold, ΩAR <1, calcifying organisms (i.e. molluscs, pteropods, foraminifera, crabs, etc.) are subject to dissolution of shells and aragonite structures. This objective agrees with the challenge 'Ocean, climate change and acidification' of the EU COST Ocean Governance for Sustainability project, which aims to combine the information collected on the state of health of the oceans. Two open-sources data products, EMODnet and GLODAPv2, have been integrated and analysed for the first time in the North-East Atlantic region. The integrated dataset contains 1038 ΩAR vertical profiles whose time distribution spans from 1970 to 2014. The ΩAR has been computed from CO2SYS software considering different combinations of input parameters, pH, Total Alkalinity (TAlk) and Dissolved Inorganic Carbon (DIC), associated with Temperature, Salinity and Pressure at in situ conditions. A sensitivity analysis has been performed to better understand the data consistency of ΩAR computed from the different combinations of pH, Talk and DIC and to verify the difference among observed TAlk and DIC parameters and their output values from the CO2SYS tool. Maps of ΩAR have been computed with the best data coverage obtained from the two datasets, at different levels of depth in the area of investigation and they have been compared to the work of Jiang et al. (2015). The results are consistent and show similar horizontal and vertical patterns. The study highlights some aragonite undersaturated values (ΩAR <1) below 500 meters depth, suggesting a potential effect of acidification in the considered time period. This thesis aims to be a preliminary work for future studies that will be able to design the ΩAR variability on a decadal distribution based on the extended time-series acquired in this work.

Occurrence of Diodon eydouxii (Actinopterygii: Diodontidae), in the Azores and comparison with Pacific specimens

A specimen of porcupine fish was collected by a fisherman at Terceira Island, Azores (north-eastern Atlantic), and identified as the pelagic porcupinefish, Diodon eydouxii Brisout de Barneville, 1846, a species recently recorded for the first time from the Azores. This record, together with an examination of the first reported specimen, allowed us to compare the external morphology with Pacific specimens. The possibility of this species to be relatively common in the Azores is discussed.

Defining habitat characteristics influencing the distribution, density and growth of Plaice (Pleuronectes Platessa) and Dab (Limanda Limanda) on west of Ireland nursery grounds

Plaice (Pleuronectes platessa, L.) and dab (Limanda limanda, L.) are among the most abundant flatfishes in the north-eastern Atlantic region and the dominant species in shallow coastal nursery grounds. With increasing pressures on commercial flatfish stocks in combination with changing coastal environments, better knowledge of population dynamics during all life stages is needed to evaluate variability in year-class strength and recruitment to the fishery. The aim of this research was to investigate the complex interplay of biotic and abiotic habitat components influencing the distribution, density and growth of plaice and dab during the vulnerable juvenile life stage and to gain insight in spatial and temporal differences in nursery habitat quality along the west coast of Ireland. Intraspecific variability in plaice diet was observed at different spatial scales and showed a link with condition, recent growth and morphology. This highlights the effect of food availability on habitat quality and the need to consider small scale variation when attempting to link habitat quality to feeding, growth and condition of juvenile flatfish. There was evidence of trophic, spatial and temporal resource partitioning between juvenile plaice and dab allowing the co-existence of morphologically similar species in nursery grounds. In the limited survey years there was no evidence that the carrying capacity of the studied nursery grounds was reached but spatial and interannual variations in fish growth indicated fluctuating environments in terms of food availability, predator densities, sediment features and physico-chemical conditions. Predation was the most important factor affecting habitat quality for juvenile plaice and dab with crab densities negatively correlated to fish condition whereas shrimp densities were negatively associated with densities of small-sized juveniles in spring. A comparison of proxies for fish growth showed the advantage of Fulton’s K for routine use whereas RNA:DNA ratios proved less powerful when short-term environmental fluctuations are lacking. This study illustrated how distinct sets of habitat features can drive spatial variation in density and condition of juvenile flatfish highlighting the value of studying both variables when modeling habitat requirements. The habitat models generated in this study also provide a powerful tool to predict potential climate and anthropogenic impacts on the distribution and condition of juveniles in flatfish nurseries. The need for effective coastal zone management was emphasized to ensure a sustainable use of coastal resources and successful flatfish recruitment to the fishery.

Inference of Raja miraletus population structure using mitochondrial and nuclear DNA: comparing the resolution power of molecular markers in exploring species and population boundaries

This study focused on the role of oceanographic discontinuities and the presence of transitional areas in shaping the population structure and the phylogeography of the Raja miraletus species complex, coupled with the test of the effective occurrence of past speciation events. The comparisons between the Atlantic African and the North-Eastern Atlantic-Mediterranean geographic populations were unravelled using both Cytochrome Oxidase I and eight microsatellite loci. This approach guaranteed a robust dataset for the identification of a speciation event between the Atlantic African clade, corresponding to the ex Raja ocellifera nominal species, and the NE Atlantic-Mediterranean R. miraletus clade. As a matter of fact, the origin of the Atlantic Africa and the NE Atlantic-Mediterranean deep split dated about 11.74MYA and was likely due to the synergic influence currents and two upwelling areas crossing the Western African Waters. Within the Mediterranean Sea, particular attention was also paid to the transitional area represented by Adventura and Maltese Bank, that might have contributed in sustaining the connectivity of the Western and the Eastern Mediterranean geographical populations. Furthermore, the geology of the easternmost part of Sicily and the geo-morphological depression of the Calabrian Arc could have driven the differentiation of the Eastern Mediterranean Sea. Although bathymetric and oceanographic discontinuity could represent barriers to dispersal and migration between Eastern and Western Mediterranean samples, a clear and complete genetic separation among them was not detected. Results produced by this work identified a speciation event defining Raja ocellifera and R. miraletus as two different species, and describing the R. miraletus species complex as the most ancient cryptic speciation event in the family Rajidae, representing another example of how strictly connected the environment, the behavioural habits and the evolutionary and ecologic drivers are.