Production and Characterization of Lignin Peroxidases from Mangrove Ascomycetes

In this thesis, the production and characterization of ligninolytic enzymes using the fungi isolated from mangrove area are studied. The objective of the present work are isolation and screening of dye decolorizing micro-organisms from mangrove area, screening of the selected microorganisms for the production of lignin degrading enzymes, identification of the potent micro-organisms, characterization of the crude enzyme, lignin peroxidase, of the selected fungi—Aspergillus sp. SIP 11 and Penicillium sp. SIP 10 etc. This included the determination of the optimum pH, temperature, veratryl alcohol and H2O2 concentration. Besides the stability of crude LiP at different pHs and temperatures were studied. The immense applications, particularly in bioremediation, to which the lignin degrading micro-organisms could be used make this study important, the ascomycetes and deuteromycetes fungi, especially form the marine environment were studied with respect to their ligninolytic enzyme system making this study an initial step in unraveling the vast hidden potential of these microbes in bioremediation, the marine microbes are halophilic in nature which make them better suited to cope with the high salinity of industrial effluents thereby giving them added advantage in the filed of bioremediation. The thesis deals with the isolation and screening of lignin degrading enzyme-producing microbes from mangrove area. The identification of the most potent fungal isolates and characterization of LiP from these are also done.

Coral Reef Ecosystem of Lakshadweep Archipelago –A Biogeochemical Facsimile

The present study focuses on the biochemical aspects of six islands belonging to Lakshadweep Archipelago – namely Kavaratti, Kadamath, Kiltan, Androth, Agathy and Minicoy. Lakshadweep, which is an area biologically significant due to isolation from the major coastline, remains as one of the least studied areas in Indian Ocean. The work, processed out the distributional pattern of trace metals among the biotic (corols, sea weeds and sea grass) and abiotic component (sediments) of ecosystem. An effort is made to picturise the spatial distribution pattern of different forms of nitrogen and phosphorus in the various sedimentary environments of the study area. Studies on the biogeochemical and nutrient aspects of the concerned study area scanty. In Lakshadweep, the local life is very dependent on reefs and its resources. The important stress which produce a threatening effort on the existence for coral reefs are anthropogenic-namely-organic and inorganic pollution from sewage, agricultural and industrial waters, sediment damage from excessive land cleaning, and over exploitation particularly through destructive fishing methods. In addition these one other more localized or less service anthropogenic stress: pollution by oil and other hydrocarbons, complex organic molecular and heavy metal pollution, and destructive engineering practices.

Intervariability of Phosphorus Speciation in Selected Mangrove Ecosystems Around the Greater Cochin

Mangrove forests are best developed on tropical shorelines where there is an extensive intertidal zone, with an abundant supply of fine-grained sediment. It receives a mixture of liable and refractory organic and inorganic phosphorus compounds from the overlying water and the surrounding landmasses. Organic phosphorus is not available for mangrove plant nutrition. While inorganic phosphate represents the largest potential pool of plant-available and which are bound in the form of Ca, Fe and Al phosphate. It deals with the scientific investigations on mangrove systems in the Kerala coastline and to investigate nutrient distribution of mangrove ecosystems of greater Cochin area. It discusses the description of study areas such as Murikkumpadam-Vypeen Island and Aroor. Then it deals with the spatial and seasonal distribution of dissolved ammonia, nitrite, nitrate, inorganic phosphate, organic phosphate and the total phosphorus in surface waters of mangrove fringed creeks. Then it discusses the geochemical compositions of mangrove-fringed sediments and also the chemical speciation of phosphorus in sediment cores.

Macrobenthos of Minicoy Island, Lakshadweep

In this present study macro benthos of minicoy island lakshadweep, an attempt has been made to study the distribution and community structure of benthos at different ecosystems. The main objectives of the study include the identification of benthic fauna, their distribution and composition, standing stock, qualitative and quantitative nature in relation to hydrography,seasons and sediment texture, community structure analysis and tropic relationships. This base line study at Minicoy,thus establishes that the benthos of sea grass and mangrove ecosystems(nursery grounds) determines the richness and diversity of demersal fish fauna at the nearby lagoon and reef areas to a great extent. Any serious stress on these ecosystems may lead to disappearance of certain fish species in the nearby future

Studies on the Benthic Fauna of the Mangrove Swamps of Cochin Area

Division of Marine Biology, Micrbiology and Biochemistry,Cochin University of Science and Technology

Characterisation and Distribution of Amino Acids in the Mangrove Sediments of Kochi

Mangrove swamps are unique inter-tidal wetland ecosystems found in sheltered tropical and subtropical shores.Mangrove sediments can be considered as large reservoirs of amino acids,which exist in several different forms,like free amino acids in the sediment micropores,as amino acids,peptides or proteins bound to clay minerals or as amino acids,peptides or proteins bound to humic colloids.Inorder to assess survival conditions of organisms of mangroves,it is important to understand stability of amino acids in the sediments.The amounts of amino acids present in sediment represent a balance between its synthesis and destruction by microorganisms.Thus amino acid analysis offers more insight into the processes of diagenesis,which changes the nature and characteristics of organic matter deposition and decomposition.

Some biogenic compounds and thier derivatives in selected mangrove ecosystems

Department of Chemical Oceanography,Cochin University of Science and Technology

Fatty acids as Biomarkers in the Mangrove sediments of Cochin

The biogeochemistry of mangroves are the least understood ecological properties because of their sediment complexicity due to the tidal influx of allochthonous organic matter and the autochthonous inputs.In order to understand the relative importance of biogeochemical processes,it is necessary not only to characterise and qualify the organic matter but also to identify its major sources .The present study is a preliminary investigation to identify the sources of organic matter in three mangrove systems of Cochin Estuary using fatty acid biomarkers,δ13 C of total organic matter,elemental composition and biochemical composition.

Purification and characterisation of Vibriophage isolated from Mangalavanam mangrove

The temperate, filamentous phage ФMV -5 isolated from Mangalavanam mangrove of Kochi, using the environmental strain of Vibrio sp. MV-5 shares many similar properties with other marine phage isolates, while also remaining unique. The study has revealed that the interaction of temperate phages and the microbial population in the marine environment may contribute significantly to microbial genetic diversity and composition by conversion and transduction and which requires greater study.Prophages contribute a substantial share of the mobile DNA of their bacterial hosts and seem to influence the short-term evolution of pathogenic bacteria. Automated methods for systematic investigation of prophages and other mobile DNA elements in the available bacterial genome sequences will be necessary to understand their role in bacterial genome evolution. In the past, phages were mainly investigated as the simplest model systems in molecular biology. Now it is increasingly realized that phage research will be instrumental in the understanding of bacterial abundance in the environment. One can predict that phage research will impact diverse areas such as geochemistry and medicine. Success will largely depend on integrative multidisciplinary approaches in this field. Clearly, further studies are required to understand how vibriophages interact with Vibrios to promote this organism's acquisition of the critical genes which alter its virulence or adaptation to its environmental niche.It is evident from this study and comparison with those reports cited above that vibriophage ФMV-5 is a previously unreported bacteriophage. It is recommended that the minimum requirement for reporting a new phage should be novel morphological markers and a description of host range, both of which have been achieved in this study.

Sustainability and Livelihood Issues of Vembanad Ecosystem Fisherfolk Communities

Dept.of Applied Economics,Cochin University of Science and Technology

Triterpenoids as Biomarkers of Mangrove Organic Matter in Cochin Estuarine System

This thesis entitled triterpenoids as biomarkers of mangrove organic matter in cochin estuarine system.Mangrove forests, known as rainforests of the sea are one of the most important coastal ecosystems in the world in terms of primary production and coastal protection.Estuaries, the important areas of world’s coastal zones link the carbon cycle of the oceans to the continents.Three mangrove ecosystems and three estuarine stations around Cochin region, southwest coast of India were selected for the present study. The thesis is divided into five chapters. Chapter 1 is the Introduction and it deals with the aim and scope of the present study. Chapter 2 is Materials and Methods. This chapter deals with the nature and general geographical features of the study area. It also contains the details of the sampling and analytical methodology.the present study. Chapter 3 is Geochemistry and it includes the seasonal and spatial variations of the geochemical parameters in the surface sediments.Chapter 4 is Biochemical Composition. It covers the biochemical composition of organic matter in the surface sediments to examine the quality and quantity of organic matter.Chapter 5, Triterpenoid Biomarkers in Sediments, characterize the organic matter in the sediments of the mangrove and estuarine ecosystems under study, to assess the possible sources with the help of triterpenoid biomarkers along with other lipid biomarkers.

Production and Characterization of Lignin Peroxidases from Mangrove Ascomycetes

The continually growing worldwide hazardous waste problem is receiving much attention lately. The development of cost effective, yet efficient methods of decontamination are vital to our success in solving this problem.Bioremediation using white rot fungi, a group of basidiomycetes characterized by their ability to degrade lignin by producing extracellular LiP, MnP and laccase have come to be recognized globally which is described in detail in Chapter 1.These features provide them with tremendous advantages over other micro-organisms.Chapter 2 deals with the isolation and screening of lignin degrading enzyme producing micoro-organisms from mangrove area. Marine microbes of mangrove area has great capacity to tolerate wide fluctuations of salinitie.Primary and secondary screening for lignin degrading enzyme producing halophilic microbes from mangrove area resulted in the selection of two fungal strains from among 75 bacteria and 26 fungi. The two fungi, SIP 10 and SIP ll, were identified as penicillium sp and Aspergillus sp respectively belonging to the class Ascomycetes .Specific activity of the purified LiP was 7923 U/mg protein. The purification fold was 24.07 while the yield was 18.7%. SDS PAGE of LiP showed that it was a low molecular weight protein of 29 kDa.Zymogram analysis using crystal violet dye as substrate confirmed the peroxidase nature of the purified LiP.The studies on the ability of purified LiP to decolorize different synthetic dyes was done. Among the dyes studied, crystal violet, a triphenyl methane dye was decolorized to the greatest extent.

Sterols in mangrove sediments of the cochin estuary

The thesis entitled “Sterols in Mangrove Sediments of the Cochin Estuary” is an attempt to characterize the sterol content of the mangrove sediments, their dietary status with respect to the natural flora and fauna present, their transfonnations in the sediment and assess contributions, if any to the nursery character of the mangrove eco system. Samplings were done from two sites at Mangalavanam and Vypin. Mangalavanam is a patchy mangrove area in the heart of the city of Cochin and serves as a small bird sanctuary. This is an almost closed system with a single narrow canal linking to the estuary. Vypin, the largest single stretch of mangroves in Kerala, is regularly inundated by a semi diurnal rhythm of Cochin bar mouth. Perhaps, this is the only site in Kerala where one can see mangroves right along the accreting seacoast. However a lot of developmental pressure is threatening the very existence of these mangroves. Post monsoon sediment samples from these areas were used for the present study, as it is the period of maximum faunal growth and activity