Seascape ecology of coastal biogenic habitats: advances, gaps, and challenges

We review the progress made in the emerging field of coastal seascape ecology, i.e. the application of landscape ecology concepts and techniques to the coastal marine environment. Since the early 1990s, the landscape ecology approach has been applied in several coastal subtidal and intertidal biogenic habitats across a range of spatial scales. Emerging evidence indicates that animals in these seascapes respond to the structure of patches and patch mosaics in different ways and at different spatial scales, yet we still know very little about the ecological significance of these relationships and the consequences of change in seascape patterning for ecosystem functioning and overall biodiversity. Ecological interactions that occur within patches and among different types of patches (or seascapes) are likely to be critically important in maintaining primary and secondary production, trophic transfer, biodiversity, coastal protection, and supporting a wealth of ecosystem goods and services. We review faunal responses to patch and seascape structure, including effects of fragmentation on 5 focal habitats: seagrass meadows, salt marshes, coral reefs, mangrove forests, and oyster reefs. Extrapolating and generalizing spatial relationships between ecological patterns and processes across scales remains a significant challenge, and we show that there are major gaps in our understanding of these relationships. Filling these gaps will be crucial for managing and responding to an inevitably changing coastal environment. We show that critical ecological thresholds exist in the structural patterning of biogenic ecosystems that, when exceeded, cause abrupt shifts in the distribution and abundance of organisms. A better understanding of faunal–seascape relationships, including the identifications of threshold effects, is urgently needed to support the development of more effective and holistic management actions in restoration, site prioritization, and forecasting the impacts of environmental change.

Preliminary results from the Caribbean Acoustic Tracking Network (CATn): a data sharing partnership for acoustic tracking and movement ecology of marine animals in the Caribbean Sea

We have recently exchanged and integrated into a single database tag detections for conch, teleost and elasmobranch fish from four separately maintained arrays in the U.S. Virgin Islands including the NMFS queen conch array (St. John nearshore), NOAA’s Biogeography Branch array (St. John nearshore & midshelf reef); UVI shelf edge arrays (Marine Conservation District, Grammanik & other shelf edge); NOAA NMFS Apex Predator array COASTSPAN (St. John nearshore). The integrated database has over 7.5 million hits. Data is shared only with consent of partners and full acknowledgements. Thus, the summary of integrated data here uses data from NOAA and UVI arrays under a cooperative agreement. The benefits of combining and sharing data have included increasing the total area of detection resulting in an understanding of broader scale connectivity than would have been possible with a single array. Partnering has also been cost-effectiveness through sharing of field work, staff time and equipment and exchanges of knowledge and experience across the network. Use of multiple arrays has also helped in optimizing the design of arrays when additional receivers are deployed. The combined arrays have made the USVI network one of the most extensive acoustic arrays in the world with a total of 150+ receivers available, although not necessarily all deployed at all times. Currently, two UVI graduate student projects are using acoustic array data.

Sediment Quality Triad assessment in Kachemak Bay: characterization of soft bottom benthic habitats and contaminant bioeffects assessment

A baseline environmental characterization of the inner Kachemak Bay, Alaska was conducted using the sediment quality triad approach based on sediment chemistry, sediment toxicity, and benthic invertebrate community structure. The study area was subdivided into 5 strata based on geophysical and hydrodynamic patterns in the bay (eastern and western intertidal mud flats, eastern and western subtidal, and Homer Harbor). Three to seven locations were synoptically sampled within each stratum using a stratified random statistical design approach. Three sites near the village of Port Graham and two sites in the footprint of a proposed Homer Harbor expansion were also collected for comparison. Concentrations of over 120 organic and metallic contaminants were analyzed. Ambient toxicity was assessed using two amphipod bioassays. A detailed benthic community condition assessment was performed. Habitat parameters (depth, salinity, temperature, dissolved oxygen, sediment grain size, and organic carbon content) that influence species and contaminant distribution were also measured at each sampling site. Sediments were mostly mixed silt and sand; characteristic of high energy habitats, with pockets of muddy zones. Organic compounds (PAHs, DDTs, PCBs, cyclodienes, cyclohexanes) were detected throughout the bay but at relatively low concentrations. Tributyltin was elevated in Homer Harbor relative to the other strata. With a few exceptions, metals concentrations were relatively low and probably reflect the input of glacial runoff. Relative to other sites, Homer Harbor sites were shown to have elevated concentrations of metallic and organic contaminants. The Homer Harbor stratum however, is a deep, low energy depositional environment with fine grained sediment. Concentrations of organic contaminants measured were five to ten times higher in the harbor sites than in the open bay sites. Concentration of PAHs is of a particular interest because of the legacy of oil spills in the region. There was no evidence of residual PAHs attributable to oil spills, outside of local input, beyond the confines of the harbor. Concentrations were one to ten times below NOAA sediment quality guidelines. Selected metal concentrations were found to be relatively elevated compared to other data collected in the region. However, levels are still very low in the scale of NOAA’s sediment quality guidelines, and therefore appear to pose little or no ecotoxicity threat to biota. Infaunal assessment showed a diverse assemblage with more than 240 taxa recorded and abundances greater than 3,000 animals m-22 in all but a few locations. Annelid worms, crustaceans, snails, and clams were the dominant taxa accounting for 63 %, 19%, 5%, and 7 % respectively of total individuals. Specific benthic community assemblages were identified that were distributed based on depth and water clarity. Species richness and diversity was lower in the eastern end of the bay in the vicinity of the Fox River input. Abundance was also generally lower in the eastern portion of the study area, and in the intertidal areas near Homer. The eastern portions of the bay are stressed by the sediment load from glacial meltwater. Significant toxicity was virtually absent. Conditions at the sites immediately outside the existing Homer Harbor facility did not differ significantly from other subtidal locations in the open Kachemak Bay. The benthic fauna at Port Graham contained a significant number of species not found in Kachemak Bay. Contaminant conditions were variable depending on specific location. Selected metal concentrations were elevated at Port Graham and some were lower relative to Kachemak Bay, probably due to local geology. Some organic contaminants were accumulating at a depositional site.

Climate-related long-term faunal changes in a California rocky intertidal community [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): The effects of gradual climate change (ie, multi-decadal) on biological communities are not well understood for most natural systems, owing principally to the lack of quantitative observations in early studies. ... We resurveyed invertebrate species on an intertidal transect in central California, first established and surveyed in 1931, to assess shifts in community structure.

Hermaphroditism in some marine animals

Hermaphroditism, a phenomenon in which one and the same individual produces sperms, the male gamate the ovum, the female gamate, is generally common in plants and lower animals and hence is considered as a primitive character. However, it is rare in higher invertebrates such as insects, spiders, prawns and also in the lower vertebrates to which fishes belong. Prawns and fishes have highly evolved reproductive systems and occur as separate individuals of males and females. Both these groups do have some species which are regurarly hermaphrodites and others which are teratologically hermaphrodites.

A report of the Fisheries Catch Assessment Survey in the Ugandan waters of Lake Victoria for the February 2008 survey

Between July 2005 and February 2008, ten Catch Assessment Surveys (CASs) were conducted at 54 pre-selected fish landing sites in the Ugandan part of Lake Victoria comprising approximately 10% of all landing sites in each of the 11 districts sharing the lake. The CASs were conducted following regionally harmonised Standard Operating Procedures (SOPs). This report covers the CAS conducted in February 2008 and puts into context the trends generated by results of the previous surveys. The catch rates of Nile perch in gillnetting boats with motor/sail, reduced from 26.9 kg boat-1 day-1 in August 2007 to 22.8 kg boat-1 day-1 in February 2008. Whereas the catch rates of paddle Sesse boats remained more or less the same as in August 2007. The Nile perch catch rates of the long line fishery of the boats using motor/sail was similar, 35 and 36 kg boat-1 day-1 in August 2007 and February 2008 respectively but the catch rates of paddle Sesse boats using long lines showed some more increase from 19 to 22 kg boat (-1) day (-1). In the tilapia fishery, the catch rates of the parachute boats using gillnets showed further decrease in a row from 12.6 kg boat-1 day-1 in December 2006, 11.6 kg boat-1 day-1 in March 2007, 11.2 kg boat-1 day-1 in August 2007 and 10.0 kg boat-1 day-1 in February 2008. The overall impact of reduced catch rates in the predominant effort groups, e.g. gillnetting boats using motor/sail in the Nile perch fishery and Parachute boats using gillnets in the tilapia fishery overshadowed the increases in less dominant effort groups and resulted in the lowest monthly catch estimates recorded in the surveys conducted since 2005. Whereas there was a clear downward trend in the Nile perch catch rates of boats using gillnets, which corroborates with the information of declining stocks from the recent Acoustics surveys, the catch rates in the long line fishery remained stable and even somewhat increasing in the last four surveys. The factors that maintain high catches against reduction of fish biomass in the long line fishery and their effects on sustainability of the Nile perch fishery should be investigated further. The Mukene fishery, characterised by large fluctuations in the catch rates did not show much change in the last two surveys in August 2007 and February 2008 and the annual catch estimates showed an overall increase of 7% from 2005 to 2007. The Mukene fishery in the Ugandan waters of Lake Victoria remained a near shore fishery in which paddle Sesse boats using small seines or scoop nets were the dominant craft.

Vertical distribution of molluscs in the intertidal area in and around Mumbai, India

Vertical distribution of intertidal molluscs in and around Mumbai had been studied. Each species has an upper and lower limit of distribution along the vertical intertidal gradient and are concentrated at particular levels or zones where they find optimum living conditions. Zonation of the intertidal area with reference to molluscs at rocky shores of TIFR, Bandstand and NCPA has similarities. However, there is no similarity in zonation among rocky, sandy and muddy shores. Rocky intertidal zones are more diverse and dense in terms of molluscs. The mid and lower littoral zones have rich diversity. The upper littoral zone at some sites, especially Girgaon chowpatty is totally devoid of molluscs due to anthropogenic activities. Gafrarium divaricatum, Nerita oryzarum, N. polita and Neritina crepidularia have established themselves in all three marked zones, indicating their power to adjust with the wide fluctuations in surrounding environmental conditions.

Length-weight relationship of intertidal molluscs from Mumbai, India

A study on the length-weight relationship of common intertidal molluscs from Mumbai showed a high degree of correlation between their length and weight. Most of the molluscs exhibited isometric growth pattern but in some species, allometric growth was found, which is attributed to maturity, nonlinear growth of shell and the ecological conditions. The variations in the growth rate of Gafriarium divaricatum sampled from two geographically separate sites, Bandstand and NCPA, is a result of variation in ecological conditions.

Macrobenthos of intertidal zone of Versova along the coast of Mumbai

To assess the biodiversity of macro benthos in the changing environment along the coast of Mumbai, the intertidal zone of Versova was identified. The water quality in this intertidal region was poor with low pH, salinity and dissolved oxygen, and high nitrite, nitrate, phosphate and ammonia. The substratum was sandy with 1.29% organic matter in it. Mean faunal density of 2257 no./m² was recorded during the study which was mainly contributed by polychaetes (83.5%) followed by amphipods (14.5%), while other groups represented were isopods, crabs, hermit crabs, unidentified decapods, pelecypods and gastropods. Average biomass of 34.83 g/m² (93.7%) was contributed by polychaetes. Shannon and Wiener Index (0.4107) indicated heavy pollution in the intertidal area of Versova.

Final report of the Fisheries Catch Assessment Survey in the Ugandan waters of Lake Victoria for the May 2011 survey

This report presents findings of the CAS conducted in the Ugandan waters of Lake Victoria in May 2011. The results of the previous eleven CASs conducted under the IFMP of the LVFO programme in July, August, September and November 2005; in March, August and December 2006; in March and August 2007; in February and December 2008; and March 2010 are included to show the emerging trends. The report also presents annual catch estimates for the Ugandan part of the lake from 2005 to 2011. Through these CASs, information is building up to show the emerging picture of fish production in the Ugandan waters of the lake. Similar surveys are conducted in the Kenyan and Tanzanian parts of the lake, which provide the lake wide perspective of fisheries production but this time not simultaneously as under the LVFO effort due to different sources and timing of funding. These data can now be utilised together with other Resource and Socio-economic Monitoring survey data for a stock assessment of the lake to provide a firm basis for planning and management of the fisheries resources.

Bottom trawl codend mesh selectivity for Bagrus docmac (Forskahl) from Lake Victoria, with some remarks on the proposed trawl fishery

The methods of estimating codend selectivity for alternate hauls are briefly described and applied to Bagrus docmac (forskahl) data from Lake Victoria. Certain inconsistencies are noted and it is postulated that they may be due to differential escapement of larger Bagrus docmac through the trawl meshes when the different codends were fitted. The calculated 50% selection lengths yielded a fair regression on measured weigh give a fork length selection factor of 2.33, consistent with data from the smallest codend mesh size used. The implications of the findings are briefly discussed in relation to the proposed Haplochromis trawl fishery 1971.

The establishment of a commercial fishery for Haplochromis in the Uganda waters of Lake Victoria

Lake Victoria, straddling the Equator, is the second largest lake in the world, with a surface area of approximately 26,000 square miles (41,500 square kilometers) and a maximum depth of about 300 feet. Uganda possesses most of the north end of the lake which consists of a long, indented coastline and a chain of offshore islands on the edge of a 'continental shelf' separating relatively shallow sheltered inshore waters from the deeper open waters of the lake. At the present time the lake is harvested mainly by a native gill net fishery confined almost entirely to the shallow sheltered inshore waters. The annual production of all species from Uganda waters is in the region of 24,000 tons per annum, and Tilapia(Cichlidae)is commercially the most important genus. Haplochromis, a close relative of Tilapia, but generally much smaller, contributes only a small amount to this annual production; see Table 1, although they are probably the most abundant group of fish present in the lake. Through international aid programmes Uganda has been offered a canning plant and it is thought that Haplochromis is the most suitable type of fish to be utilized by such a plant. The Uganda Fisheries Department are conducting research into processing techniques and marketing and the East African Freshwater Fisheries Research Organization was asked to conduct a survey of the Haplochromis stocks of the lake with a view to estimating the ability or otherwise of these stocks to support a commercial canning industry.