Characteristic enrichment of DNA repeats in different genomes

Using computer programs developed for this purpose, we searched for various repeated sequences including inverted, direct tandem, and homopurine–homopyrimidine mirror repeats in various prokaryotes, eukaryotes, and an archaebacterium. Comparison of observed frequencies with expectations revealed that in bacterial genomes and organelles the frequency of different repeats is either random or enriched for inverted and/or direct tandem repeats. By contrast, in all eukaryotic genomes studied, we observed an overrepresentation of all repeats, especially homopurine–homopyrimidine mirror repeats. Analysis of the genomic distribution of all abundant repeats showed that they are virtually excluded from coding sequences. Unexpectedly, the frequencies of abundant repeats normalized for their expectations were almost perfect exponential functions of their size, and for a given repeat this function was indistinguishable between different genomes.

A high-resolution annotated physical map of the human chromosome 13q12-13 region containing the breast cancer susceptibility locus BRCA2.

Various types of physical mapping data were assembled by developing a set of computer programs (Integrated Mapping Package) to derive a detailed, annotated map of a 4-Mb region of human chromosome 13 that includes the BRCA2 locus. The final assembly consists of a yeast artificial chromosome (YAC) contig with 42 members spanning the 13q12-13 region and aligned contigs of 399 cosmids established by cross-hybridization between the cosmids, which were selected from a chromosome 13-specific cosmid library using inter-Alu PCR probes from the YACs. The end sequences of 60 cosmids spaced nearly evenly across the map were used to generate sequence-tagged sites (STSs), which were mapped to the YACs by PCR. A contig framework was generated by STS content mapping, and the map was assembled on this scaffold. Additional annotation was provided by 72 expressed sequences and 10 genetic markers that were positioned on the map by hybridization to cosmids.

Determination of absorption curves, dissolution profiles and establishment of in vitro-in vivo correlation by in silico methods using GastroPlusTM and DDDPlusTM

The use of computer programs to predict drug absorption in humans and to simulate dissolution profiles has become a valuable tool in the pharmaceutical area. The objective of this study was to use in silico methods through software GastroPlusTM and DDDPlusTM to simulate drug absorption curves and dissolution profiles, and to establish in vitro-in vivo correlations (IVIVCs). The work presented herein is divided into five chapters and includes the drugs ketoprofen, pyrimethamine, metronidazole, fluconazole, carvedilol and doxazosin. In Chapter 1, simulated plasma curves for ketoprofen matrix tablets are presented and IVIVC was established. The use of simulated intrinsic dissolution tests for pyrimethamine and metronidazole as a tool for biopharmaceutics classification is detailed in Chapter 2. In Chapter 3, simulation of plasma curves for fluconazole capsules with different dissolution profiles is demonstrated as a tool for biowaiver. IVIVC studies were also conducted for carvedilol immediate-release tablets from dissolution profiles in Chapter 4. Chapter 5 covers the application of simulated dissolution tests for development of doxazosin extended-release formulations. Simulation of plasma curves and IVIVC using the software GastroPlusTM as well as intrinsic dissolution tests and dissolution profiles using the software DDDPlusTM proved to be a tool of wide application in predicting biopharmaceutical characteristics of drugs and formulations, allowing the reduction of time and costs of experimental laboratory work.

PCRELAP5 - Programa de cálculo para os dados de entrada do código RELAP5

Após os acidentes nucleares ocorridos no mundo, critérios e requisitos extremamente rígidos para a operação das instalações nucleares foram determinados pelos órgãos internacionais que regulam essas instalações. A partir da ocorrência destes eventos, as operadoras de plantas nucleares necessitam simular alguns acidentes e transientes, por meio de programas computacionais específicos, para obter a licença de operação de uma planta nuclear. Com base neste cenário, algumas ferramentas computacionais sofisticadas têm sido utilizadas como o Reactor Excursion and Leak Analysis Program (RELAP5), que é o código mais utilizado para a análise de acidentes e transientes termo-hidráulicos em reatores nucleares no Brasil e no mundo. Uma das maiores dificuldades na simulação usando o código RELAP5 é a quantidade de informações geométricas da planta necessárias para a análise de acidentes e transientes termo-hidráulicos. Para a preparação de seus dados de entrada é necessário um grande número de operações matemáticas para calcular a geometria dos componentes. Assim, a fim de realizar estes cálculos e preparar dados de entrada para o RELAP5, um pré-processador matemático amigável foi desenvolvido, neste trabalho. O Visual Basic for Applications (VBA), combinado com o Microsoft Excel, foi utilizado e demonstrou ser um instrumento eficiente para executar uma série de tarefas no desenvolvimento desse pré-processador. A fim de atender as necessidades dos usuários do RELAP5, foi desenvolvido o Programa de Cálculo do RELAP5 PCRELAP5 onde foram codificados todos os componentes que constituem o código, neste caso, todos os cartões de entrada inclusive os opcionais de cada um deles foram programados. Adicionalmente, uma versão em inglês foi criada para PCRELAP5. Também um design amigável do PCRELAP5 foi desenvolvido com a finalidade de minimizar o tempo de preparação dos dados de entrada e diminuir os erros cometidos pelos usuários do código RELAP5. Nesse trabalho, a versão final desse pré-processador foi aplicada com sucesso para o Sistema de Injeção de Emergência (SIE) da usina Angra 2.

Do arquivo ao novo : impactos da tecnologia digital no armazenamento e disseminação da informação na cultura contemporânea

While taking paths from the archive to the new, this dissertation reflects on the resulting impacts of the introduction, massification and dissemination of digital technology, in the way we store and deal with information, inside the complex that we understand as culture. To this end, a theoretical investigation is performed in order to build a conceptual body from which concepts are drawn in order to effectuate a practical research. The theoretical research starts with an exordium in which the concept of the archive is deconstructed in order to identify it as a device of power and to analyse its transition from a technical analog object into a digital technology. Following this, a historical context is established, drawing on the evolution of power exercises and apparatuses, and a reading of the impacts of the present technological mediation on experience, knowledge cons¬truction and forms of control is developed. Finally, some hypotheses on the evolution of technology are formulated. The practical research materializes in the form of a digital platform which takes place in two moments: one of archive, the other of program. The first moment, of archive, con¬sists of a repository of projects dealing with the dissertation’s subject. The second moment, of program, is configured as a cultural program implemented through computer programs. These, in their execution, result in performances which, taking from the information col¬lected on the archive generate a new experience of that same information. To this effect, a framework was structured in order to have computational processes systematized in a way that the performances result in experiences with a potential for novelty, expression and reflection. Both theoretical and practical components of the research seek to address digital technology not as an end in itself, but as a factor that affects human experience and behaviour

User's manual for the CAL-3D user convenience package. Volume II - program listings. Final technical report.

National Highway Traffic Safety Administration, Washington, D.C.

Vehicle fog lighting: an analytical evaluation. Final report.

National Highway Traffic Safety Administration, Washington, D.C.

WYLBUR fundamentals.

Mode of access: Internet.

A user's guide to ISRP : the Interactive Survey Reduction Program /

"November 1984."

Driver-vehicle effectiveness model. Volume II: appendices. Final report.

National Highway Traffic Safety Administration, Washington, D.C.

Traffic safety demonstration program modeling system. Volume IV: appendices.

National Highway Traffic Safety Administration, Washington, D.C.

Guardrail/vehicle dynamic interaction. Final report.

Federal Highway Administration, Washington, D.C.

Tools for embedded computing systems software.

"Preprint for a workshop sponsored by NASA Langley Research Center, Hampton, Virginia, and the American Institute of Aeronautics and Astronautics, New York, and held in Hampton, Virginia, November 7-8, 1978."

Sensitivity analysis of vehicle design attributes that affect vehicle response in critical accident situations - part 1: user's manual. Final report.

National Highway Traffic Safety Administration, Washington, D.C.

PROMETHEUS 2 - a user oriented program for human crash dynamics. Final report.

National Highway Traffic Safety Administration, Washington, D.C.